Wall clock time and date at job start Tue Mar 31 2020 08:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46496 * 109.46897 * 203.08636 * 3 2 1 5 5 C 1.37093 * 120.00266 * 263.77613 * 4 3 2 6 6 H 1.08009 * 120.00250 * 206.41610 * 5 4 3 7 7 C 1.38952 * 120.00132 * 26.41011 * 5 4 3 8 8 N 1.31412 * 119.99936 * 8.47621 * 7 5 4 9 9 Si 1.86803 * 120.00158 * 188.47230 * 7 5 4 10 10 H 1.48506 * 109.46791 * 90.00065 * 9 7 5 11 11 H 1.48497 * 109.47026 * 210.00146 * 9 7 5 12 12 H 1.48498 * 109.47023 * 330.00485 * 9 7 5 13 13 C 1.34780 * 120.00072 * 83.77661 * 4 3 2 14 14 O 1.21288 * 120.00454 * 185.76339 * 13 4 3 15 15 C 1.50699 * 119.99757 * 5.75712 * 13 4 3 16 16 H 1.08997 * 109.47380 * 36.59522 * 15 13 4 17 17 C 1.53001 * 109.47143 * 276.59932 * 15 13 4 18 18 C 1.53002 * 109.47097 * 175.54883 * 17 15 13 19 19 O 1.42903 * 109.47337 * 156.59897 * 15 13 4 20 20 C 1.35953 * 117.00079 * 213.59893 * 19 15 13 21 21 C 1.38660 * 120.06350 * 3.01850 * 20 19 15 22 22 C 1.38180 * 119.96758 * 179.71953 * 21 20 19 23 23 C 1.38265 * 120.09506 * 0.55615 * 22 21 20 24 24 C 1.38260 * 120.12394 * 359.72654 * 23 22 21 25 25 C 1.38323 * 120.03045 * 359.97438 * 24 23 22 26 26 F 1.35097 * 120.04581 * 180.02562 * 25 24 23 27 27 H 4.40640 * 5.51383 * 180.02562 * 4 1 2 28 28 H 1.08997 * 109.46918 * 83.08997 * 3 2 1 29 29 H 1.08994 * 109.47081 * 323.08711 * 3 2 1 30 30 H 0.96996 * 119.99923 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.47530 * 295.54627 * 17 15 13 32 32 H 1.09003 * 109.47241 * 55.54713 * 17 15 13 33 33 H 1.08997 * 109.47640 * 59.99749 * 18 17 15 34 34 H 1.09000 * 109.47310 * 180.02562 * 18 17 15 35 35 H 1.09007 * 109.46917 * 299.99879 * 18 17 15 36 36 H 1.07995 * 120.01631 * 359.97438 * 21 20 19 37 37 H 1.07995 * 119.95307 * 180.27965 * 22 21 20 38 38 H 1.07999 * 119.93718 * 179.73546 * 23 22 21 39 39 H 1.07998 * 119.98168 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2715 0.5416 5 6 3.4831 2.2895 -0.3075 6 1 4.2096 3.0261 0.0026 7 6 2.9027 2.3737 -1.5672 8 7 1.9024 1.5825 -1.8839 9 14 3.5443 3.6115 -2.8104 10 1 4.6204 2.9867 -3.6210 11 1 2.4360 4.0368 -3.7026 12 1 4.0866 4.7950 -2.0959 13 6 3.2390 1.4398 1.8747 14 8 3.5421 2.5236 2.3271 15 6 2.9799 0.2814 2.8032 16 1 3.3534 -0.6373 2.3510 17 6 1.4756 0.1529 3.0508 18 6 1.2032 -1.0884 3.9029 19 8 3.6495 0.5075 4.0452 20 6 4.1319 -0.5854 4.6942 21 6 4.0197 -1.8415 4.1176 22 6 4.5158 -2.9502 4.7764 23 6 5.1138 -2.8106 6.0152 24 6 5.2225 -1.5608 6.5963 25 6 4.7332 -0.4466 5.9387 26 9 4.8397 0.7748 6.5061 27 1 -1.0502 -0.0004 0.0000 28 1 3.0094 -0.1228 -1.0202 29 1 3.0097 -0.8208 0.6172 30 1 1.4970 1.6415 -2.7632 31 1 1.1164 1.0389 3.5744 32 1 0.9569 0.0596 2.0966 33 1 1.7218 -0.9952 4.8570 34 1 0.1314 -1.1803 4.0789 35 1 1.5623 -1.9745 3.3792 36 1 3.5484 -1.9526 3.1523 37 1 4.4323 -3.9277 4.3250 38 1 5.4969 -3.6795 6.5297 39 1 5.6897 -1.4545 7.5642 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281488344.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:00 Heat of formation + Delta-G solvation = -29.758710 kcal Electronic energy + Delta-G solvation = -25458.633038 eV Core-core repulsion = 21669.355625 eV Total energy + Delta-G solvation = -3789.277414 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.81090 -41.78922 -40.24944 -38.40038 -37.14360 -34.97595 -33.66208 -33.13850 -31.64322 -30.96798 -29.03819 -28.05958 -26.27260 -24.38671 -23.42817 -22.75560 -21.00222 -19.89802 -19.62897 -18.48211 -18.05454 -17.88268 -17.47052 -17.25804 -16.62943 -16.31050 -16.18392 -15.78788 -15.58546 -15.43797 -14.96186 -14.80236 -14.26856 -14.16205 -14.01855 -13.76826 -13.50067 -13.26452 -13.04261 -12.90673 -12.80681 -12.64521 -12.55611 -12.37329 -12.19945 -11.99432 -11.55415 -11.28737 -10.93076 -10.60437 -10.30980 -9.87938 -9.84869 -9.15276 -8.32569 -6.08145 0.16540 0.30143 1.32896 1.40142 1.49929 1.69649 1.78444 2.24057 2.30508 2.40614 2.64232 2.99322 3.10027 3.28461 3.49513 3.73828 3.78594 3.83964 3.94552 4.00429 4.18889 4.34282 4.39017 4.41059 4.55385 4.61655 4.75844 4.93925 4.97996 5.01626 5.08319 5.14259 5.27218 5.31439 5.39160 5.44182 5.45838 5.73218 5.99237 6.26913 6.43374 7.06281 7.13955 7.27260 7.83943 8.63078 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.020395 B = 0.004412 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.550746 B = 6345.247002 C = 6935.939881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.144 4.144 3 C 0.230 3.770 4 N -0.441 5.441 5 C -0.350 4.350 6 H 0.068 0.932 7 C 0.009 3.991 8 N -0.870 5.870 9 Si 0.988 3.012 10 H -0.260 1.260 11 H -0.274 1.274 12 H -0.283 1.283 13 C 0.437 3.563 14 O -0.619 6.619 15 C 0.088 3.912 16 H 0.115 0.885 17 C -0.147 4.147 18 C -0.140 4.140 19 O -0.315 6.315 20 C 0.074 3.926 21 C -0.192 4.192 22 C -0.075 4.075 23 C -0.123 4.123 24 C -0.112 4.112 25 C 0.022 3.978 26 F -0.157 7.157 27 H 0.232 0.768 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.275 0.725 31 H 0.046 0.954 32 H 0.101 0.899 33 H 0.047 0.953 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.149 0.851 37 H 0.171 0.829 38 H 0.174 0.826 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.786 -16.879 8.885 19.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.145 4.145 3 C 0.108 3.892 4 N -0.160 5.160 5 C -0.477 4.477 6 H 0.086 0.914 7 C -0.195 4.195 8 N -0.507 5.507 9 Si 0.812 3.188 10 H -0.185 1.185 11 H -0.199 1.199 12 H -0.209 1.209 13 C 0.226 3.774 14 O -0.505 6.505 15 C 0.029 3.971 16 H 0.132 0.868 17 C -0.185 4.185 18 C -0.197 4.197 19 O -0.228 6.228 20 C 0.028 3.972 21 C -0.210 4.210 22 C -0.093 4.093 23 C -0.140 4.140 24 C -0.130 4.130 25 C 0.003 3.997 26 F -0.136 7.136 27 H 0.249 0.751 28 H 0.118 0.882 29 H 0.112 0.888 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.119 0.881 33 H 0.066 0.934 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.167 0.833 37 H 0.189 0.811 38 H 0.192 0.808 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.848 -16.132 8.980 18.483 hybrid contribution -0.051 1.778 -0.785 1.944 sum 0.797 -14.354 8.195 16.548 Atomic orbital electron populations 1.25068 0.96229 1.01074 1.03379 1.23061 0.94600 0.99372 0.97498 1.18406 0.85168 0.84615 1.00997 1.43771 1.55845 1.13347 1.03058 1.19548 1.23538 1.08622 0.96016 0.91356 1.26047 0.94671 0.99273 0.99527 1.70013 1.20539 1.38015 1.22098 0.85016 0.78225 0.78017 0.77551 1.18512 1.19860 1.20881 1.20746 0.83543 0.89648 0.83460 1.90510 1.54008 1.29482 1.76516 1.22340 0.94685 0.97457 0.82584 0.86790 1.22206 0.92164 1.00468 1.03659 1.21861 1.02967 0.95930 0.98924 1.86253 1.70396 1.31368 1.34822 1.19593 0.97067 0.88189 0.92389 1.21505 1.06006 0.90840 1.02641 1.21488 0.94431 0.98918 0.94471 1.21408 0.99922 0.96889 0.95822 1.21353 0.99633 0.90695 1.01355 1.17646 1.07994 0.81752 0.92326 1.91433 1.94854 1.42842 1.84518 0.75127 0.88194 0.88776 0.91486 0.93534 0.88114 0.93391 0.90482 0.89983 0.83338 0.81125 0.80837 0.82035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -8.72 18.18 74.32 1.35 -7.37 16 2 C -0.14 -5.85 8.84 31.13 0.28 -5.58 16 3 C 0.23 9.61 4.91 84.58 0.42 10.03 16 4 N -0.44 -22.70 2.59 -645.42 -1.67 -24.38 16 5 C -0.35 -19.81 9.18 84.04 0.77 -19.04 16 6 H 0.07 4.21 7.53 -2.91 -0.02 4.18 16 7 C 0.01 0.46 5.12 84.93 0.43 0.89 16 8 N -0.87 -43.68 9.12 21.66 0.20 -43.48 16 9 Si 0.99 41.98 29.56 68.60 2.03 44.01 16 10 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 11 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 12 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 13 C 0.44 23.00 6.79 87.66 0.59 23.59 16 14 O -0.62 -39.18 16.44 14.85 0.24 -38.94 16 15 C 0.09 3.54 1.86 29.85 0.06 3.59 16 16 H 0.11 3.76 3.58 -2.39 -0.01 3.75 16 17 C -0.15 -5.20 5.56 30.60 0.17 -5.03 16 18 C -0.14 -3.55 8.45 71.98 0.61 -2.94 16 19 O -0.31 -13.53 9.17 -75.12 -0.69 -14.22 16 20 C 0.07 2.44 5.28 22.53 0.12 2.56 16 21 C -0.19 -4.56 7.14 22.36 0.16 -4.40 16 22 C -0.08 -1.19 10.04 22.26 0.22 -0.97 16 23 C -0.12 -1.80 10.04 22.28 0.22 -1.58 16 24 C -0.11 -2.33 10.02 22.30 0.22 -2.11 16 25 C 0.02 0.71 7.31 22.45 0.16 0.87 16 26 F -0.16 -5.92 17.11 44.97 0.77 -5.15 16 27 H 0.23 6.51 7.80 -4.41 -0.03 6.47 16 28 H 0.10 4.41 6.68 -2.39 -0.02 4.39 16 29 H 0.09 3.09 6.09 -2.39 -0.01 3.08 16 30 H 0.27 13.05 8.31 -92.71 -0.77 12.28 16 31 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.10 3.60 3.80 -2.39 -0.01 3.59 16 33 H 0.05 1.30 6.25 -2.39 -0.01 1.28 16 34 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.08 1.65 6.78 -2.38 -0.02 1.63 16 36 H 0.15 3.19 4.58 -2.91 -0.01 3.18 16 37 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 38 H 0.17 1.14 8.06 -2.91 -0.02 1.12 16 39 H 0.16 2.49 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -77.14 325.87 7.76 -69.38 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 1.09 Total: 20.24 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: 5.79 Total: -7.47 kcal Atomic # 7 Polarization: -66.38 SS G_CDS: -1.47 Total: -67.85 kcal Atomic # 8 Polarization: -52.71 SS G_CDS: -0.44 Total: -53.16 kcal Atomic # 9 Polarization: -5.92 SS G_CDS: 0.77 Total: -5.15 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -77.14 7.76 -69.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281488344.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.618 kcal (2) G-P(sol) polarization free energy of solvation -77.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds