Wall clock time and date at job start Tue Mar 31 2020 08:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50706 * 120.00143 * 2 1 4 4 N 1.46503 * 109.46620 * 124.99825 * 3 2 1 5 5 C 1.46492 * 120.00230 * 270.00407 * 4 3 2 6 6 C 1.50702 * 109.47086 * 270.00256 * 5 4 3 7 7 H 1.07998 * 120.00151 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00166 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99875 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00255 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47001 * 59.99487 * 10 8 6 12 12 H 1.48505 * 109.47147 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.46992 * 299.99668 * 10 8 6 14 14 C 1.34779 * 119.99639 * 90.00972 * 4 3 2 15 15 O 1.21277 * 120.00239 * 180.02562 * 14 4 3 16 16 C 1.50702 * 119.99827 * 359.97438 * 14 4 3 17 17 H 1.08998 * 115.56207 * 34.31593 * 16 14 4 18 18 C 1.53003 * 117.50117 * 248.62238 * 16 14 4 19 19 C 1.52994 * 60.00279 * 252.51329 * 18 16 14 20 20 H 1.09002 * 117.49758 * 107.51192 * 19 18 16 21 21 C 1.50695 * 117.50225 * 252.51066 * 19 18 16 22 22 S 1.75886 * 125.20129 * 8.58279 * 21 19 18 23 23 C 1.75885 * 90.97065 * 180.02562 * 22 21 19 24 24 C 1.33388 * 109.59458 * 359.97438 * 23 22 21 25 25 C 1.33395 * 125.20766 * 188.89891 * 21 19 18 26 26 C 1.50697 * 122.53872 * 359.96697 * 25 21 19 27 27 H 1.07996 * 119.99781 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.00124 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.00003 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.46396 * 5.00624 * 3 2 1 31 31 H 1.08995 * 109.47386 * 245.00407 * 3 2 1 32 32 H 1.08994 * 109.47721 * 30.00248 * 5 4 3 33 33 H 1.09001 * 109.46887 * 150.00821 * 5 4 3 34 34 H 0.97003 * 120.00345 * 180.02562 * 9 8 6 35 35 H 1.08997 * 117.50063 * 145.02126 * 18 16 14 36 36 H 1.09004 * 117.51586 * 359.97438 * 18 16 14 37 37 H 1.08005 * 125.20033 * 179.97438 * 23 22 21 38 38 H 1.08002 * 122.53671 * 179.97438 * 24 23 22 39 39 H 1.08997 * 109.47292 * 270.28222 * 26 25 21 40 40 H 1.09000 * 109.46975 * 30.28325 * 26 25 21 41 41 H 1.08995 * 109.47169 * 150.27779 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1315 5 6 2.5588 1.8647 2.4249 6 6 2.8442 3.3434 2.4806 7 1 3.3040 3.8368 1.6371 8 6 2.5194 4.0662 3.6088 9 7 1.9599 3.4654 4.6362 10 14 2.8737 5.8990 3.6781 11 1 2.1380 6.5870 2.5870 12 1 2.4328 6.4392 4.9893 13 1 4.3317 6.1278 3.5131 14 6 4.2497 0.8661 0.9824 15 8 5.0197 0.8877 1.9191 16 6 4.6969 0.3175 -0.3481 17 1 4.2712 0.8052 -1.2250 18 6 4.9678 -1.1857 -0.4375 19 6 6.1344 -0.1960 -0.4534 20 1 6.7568 -0.1373 0.4395 21 6 6.8532 0.0114 -1.7615 22 16 6.3327 -0.6249 -3.3164 23 6 7.7181 0.1086 -4.1141 24 6 8.4589 0.7592 -3.2156 25 6 7.9848 0.7005 -1.9164 26 6 8.6908 1.3691 -0.7650 27 1 -0.5399 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0897 31 1 2.6213 1.4027 -0.9314 32 1 1.4888 1.6964 2.5461 33 1 3.0990 1.3600 3.2259 34 1 1.7310 3.9739 5.4299 35 1 4.7202 -1.6869 -1.3732 36 1 4.8230 -1.7781 0.4660 37 1 7.9357 0.0424 -5.1699 38 1 9.3629 1.2871 -3.4809 39 1 8.3135 2.3849 -0.6480 40 1 8.5075 0.8057 0.1499 41 1 9.7619 1.4000 -0.9642 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292313177.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:21 Heat of formation + Delta-G solvation = 41.073050 kcal Electronic energy + Delta-G solvation = -22348.390795 eV Core-core repulsion = 19128.398053 eV Total energy + Delta-G solvation = -3219.992742 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.69349 -38.38912 -36.34765 -35.46104 -33.15666 -32.03766 -30.89986 -28.17143 -27.43462 -25.52787 -24.29286 -23.43751 -21.96984 -21.42070 -19.91196 -18.73797 -18.15038 -17.28218 -16.52092 -16.42206 -15.57845 -15.29339 -14.70155 -14.45298 -14.25979 -13.93963 -13.78482 -13.44804 -12.94265 -12.87562 -12.37081 -12.25297 -12.14375 -12.01764 -11.84931 -11.64873 -11.52830 -11.31042 -11.06245 -10.90937 -10.86152 -10.63430 -10.51388 -10.35704 -10.17134 -9.64908 -9.16741 -8.97720 -8.51492 -8.42297 -8.33318 -7.69095 -6.03450 -4.08271 0.89246 1.54330 1.92058 2.47544 2.58759 3.17362 3.32564 3.36809 3.40442 3.89262 4.09502 4.43889 4.61102 4.80444 4.87876 4.92423 5.16517 5.25707 5.29870 5.32351 5.34938 5.42513 5.45375 5.52693 5.67654 5.71127 5.73308 5.92512 5.97346 5.99869 6.06564 6.19938 6.24145 6.43848 6.49580 6.82218 6.93678 7.09477 7.44573 7.54984 7.92841 8.23902 8.40336 8.89986 9.08136 9.56731 11.04615 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.014229 B = 0.004116 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.272386 B = 6801.266837 C = 8012.660911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.164 4.164 3 C 0.136 3.864 4 N -0.587 5.587 5 C 0.248 3.752 6 C -0.527 4.527 7 H 0.057 0.943 8 C 0.062 3.938 9 N -0.895 5.895 10 Si 0.897 3.103 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.536 3.464 15 O -0.539 6.539 16 C -0.167 4.167 17 H 0.121 0.879 18 C -0.147 4.147 19 C -0.059 4.059 20 H 0.136 0.864 21 C -0.139 4.139 22 S 0.090 5.910 23 C -0.221 4.221 24 C -0.125 4.125 25 C -0.104 4.104 26 C -0.096 4.096 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.033 0.967 33 H 0.043 0.957 34 H 0.264 0.736 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.162 0.838 38 H 0.138 0.862 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.643 -9.122 -17.227 20.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.183 4.183 3 C 0.012 3.988 4 N -0.317 5.317 5 C 0.129 3.871 6 C -0.566 4.566 7 H 0.075 0.925 8 C -0.140 4.140 9 N -0.534 5.534 10 Si 0.725 3.275 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.322 3.678 15 O -0.416 6.416 16 C -0.189 4.189 17 H 0.139 0.861 18 C -0.185 4.185 19 C -0.079 4.079 20 H 0.154 0.846 21 C -0.256 4.256 22 S 0.355 5.645 23 C -0.356 4.356 24 C -0.156 4.156 25 C -0.116 4.116 26 C -0.155 4.155 27 H 0.112 0.888 28 H 0.116 0.884 29 H 0.123 0.877 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.118 0.882 36 H 0.126 0.874 37 H 0.179 0.821 38 H 0.156 0.844 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.739 -9.936 -17.041 20.544 hybrid contribution 1.193 1.924 0.338 2.289 sum 6.932 -8.011 -16.704 19.780 Atomic orbital electron populations 1.23806 0.95857 1.01699 1.00934 1.23420 0.96295 0.99060 0.99554 1.20603 0.93028 0.95348 0.89796 1.48127 1.10207 1.59788 1.13595 1.19284 0.95419 0.93755 0.78643 1.21398 1.40606 0.93322 1.01265 0.92508 1.24920 0.95040 0.98719 0.95312 1.69924 1.41992 1.36260 1.05179 0.86572 0.78850 0.84937 0.77147 1.20253 1.21167 1.20168 1.19277 0.82383 0.78376 0.87790 1.90663 1.52724 1.56703 1.41544 1.22552 0.98987 0.98159 0.99184 0.86103 1.23068 1.00869 0.90726 1.03837 1.20457 0.89589 1.03470 0.94415 0.84613 1.23579 0.99977 1.05440 0.96630 1.84109 1.26865 1.54037 0.99469 1.25522 1.00133 1.06570 1.03376 1.20043 1.01678 1.01953 0.91906 1.18840 0.96025 1.00813 0.95892 1.20540 0.99025 1.00554 0.95346 0.88821 0.88351 0.87700 0.89537 0.90753 0.94904 0.93884 0.92670 0.88183 0.87408 0.82055 0.84403 0.90926 0.91033 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.42 14.32 29.02 0.42 -2.01 16 2 C -0.16 -2.36 9.85 -36.02 -0.35 -2.71 16 3 C 0.14 2.25 5.67 -5.19 -0.03 2.22 16 4 N -0.59 -12.48 2.44 -176.44 -0.43 -12.91 16 5 C 0.25 6.51 5.16 -5.20 -0.03 6.48 16 6 C -0.53 -14.99 9.39 -34.44 -0.32 -15.31 16 7 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 10 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 C 0.54 11.16 7.46 -10.98 -0.08 11.08 16 15 O -0.54 -13.45 15.84 5.56 0.09 -13.37 16 16 C -0.17 -2.58 4.99 -91.77 -0.46 -3.04 16 17 H 0.12 1.71 6.44 -51.93 -0.33 1.37 16 18 C -0.15 -1.88 9.75 -26.73 -0.26 -2.14 16 19 C -0.06 -0.84 5.26 -91.77 -0.48 -1.32 16 20 H 0.14 2.13 6.46 -51.93 -0.34 1.79 16 21 C -0.14 -1.80 6.13 -36.00 -0.22 -2.03 16 22 S 0.09 0.97 22.16 -107.50 -2.38 -1.41 16 23 C -0.22 -2.19 11.23 29.04 0.33 -1.86 16 24 C -0.13 -1.33 9.98 -41.21 -0.41 -1.74 16 25 C -0.10 -1.29 5.80 -106.25 -0.62 -1.91 16 26 C -0.10 -1.12 9.86 36.00 0.36 -0.76 16 27 H 0.09 1.06 8.06 -52.49 -0.42 0.63 16 28 H 0.10 1.27 7.84 -52.49 -0.41 0.86 16 29 H 0.10 1.42 8.06 -52.49 -0.42 1.00 16 30 H 0.09 1.49 7.72 -51.93 -0.40 1.09 16 31 H 0.07 1.05 5.99 -51.93 -0.31 0.74 16 32 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 33 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.10 1.07 7.27 -51.93 -0.38 0.70 16 36 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.16 1.18 8.06 -52.48 -0.42 0.75 16 38 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.07 0.88 6.76 -51.93 -0.35 0.53 16 41 H 0.06 0.61 8.13 -51.93 -0.42 0.18 16 LS Contribution 361.63 15.07 5.45 5.45 Total: -1.00 -32.47 361.63 -9.66 -42.13 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -5.83 Total: 2.48 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: -2.27 Total: -13.37 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.31 Total: -38.83 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.09 Total: -13.37 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -2.38 Total: -1.41 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.47 -9.66 -42.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292313177.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.204 kcal (2) G-P(sol) polarization free energy of solvation -32.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds