Wall clock time and date at job start Tue Mar 31 2020 08:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50706 * 120.00143 * 2 1 4 4 N 1.46503 * 109.46620 * 124.99825 * 3 2 1 5 5 C 1.46492 * 120.00230 * 270.00407 * 4 3 2 6 6 C 1.50702 * 109.47086 * 270.00256 * 5 4 3 7 7 H 1.07998 * 120.00151 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00166 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99875 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00255 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47001 * 59.99487 * 10 8 6 12 12 H 1.48505 * 109.47147 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.46992 * 299.99668 * 10 8 6 14 14 C 1.34779 * 119.99639 * 90.00972 * 4 3 2 15 15 O 1.21277 * 120.00239 * 180.02562 * 14 4 3 16 16 C 1.50702 * 119.99827 * 359.97438 * 14 4 3 17 17 H 1.08998 * 115.56207 * 34.31593 * 16 14 4 18 18 C 1.53003 * 117.50117 * 248.62238 * 16 14 4 19 19 C 1.52994 * 60.00279 * 252.51329 * 18 16 14 20 20 H 1.09002 * 117.49758 * 107.51192 * 19 18 16 21 21 C 1.50695 * 117.50225 * 252.51066 * 19 18 16 22 22 S 1.75886 * 125.20129 * 8.58279 * 21 19 18 23 23 C 1.75885 * 90.97065 * 180.02562 * 22 21 19 24 24 C 1.33388 * 109.59458 * 359.97438 * 23 22 21 25 25 C 1.33395 * 125.20766 * 188.89891 * 21 19 18 26 26 C 1.50697 * 122.53872 * 359.96697 * 25 21 19 27 27 H 1.07996 * 119.99781 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.00124 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.00003 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.46396 * 5.00624 * 3 2 1 31 31 H 1.08995 * 109.47386 * 245.00407 * 3 2 1 32 32 H 1.08994 * 109.47721 * 30.00248 * 5 4 3 33 33 H 1.09001 * 109.46887 * 150.00821 * 5 4 3 34 34 H 0.97003 * 120.00345 * 180.02562 * 9 8 6 35 35 H 1.08997 * 117.50063 * 145.02126 * 18 16 14 36 36 H 1.09004 * 117.51586 * 359.97438 * 18 16 14 37 37 H 1.08005 * 125.20033 * 179.97438 * 23 22 21 38 38 H 1.08002 * 122.53671 * 179.97438 * 24 23 22 39 39 H 1.08997 * 109.47292 * 270.28222 * 26 25 21 40 40 H 1.09000 * 109.46975 * 30.28325 * 26 25 21 41 41 H 1.08995 * 109.47169 * 150.27779 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1315 5 6 2.5588 1.8647 2.4249 6 6 2.8442 3.3434 2.4806 7 1 3.3040 3.8368 1.6371 8 6 2.5194 4.0662 3.6088 9 7 1.9599 3.4654 4.6362 10 14 2.8737 5.8990 3.6781 11 1 2.1380 6.5870 2.5870 12 1 2.4328 6.4392 4.9893 13 1 4.3317 6.1278 3.5131 14 6 4.2497 0.8661 0.9824 15 8 5.0197 0.8877 1.9191 16 6 4.6969 0.3175 -0.3481 17 1 4.2712 0.8052 -1.2250 18 6 4.9678 -1.1857 -0.4375 19 6 6.1344 -0.1960 -0.4534 20 1 6.7568 -0.1373 0.4395 21 6 6.8532 0.0114 -1.7615 22 16 6.3327 -0.6249 -3.3164 23 6 7.7181 0.1086 -4.1141 24 6 8.4589 0.7592 -3.2156 25 6 7.9848 0.7005 -1.9164 26 6 8.6908 1.3691 -0.7650 27 1 -0.5399 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0897 31 1 2.6213 1.4027 -0.9314 32 1 1.4888 1.6964 2.5461 33 1 3.0990 1.3600 3.2259 34 1 1.7310 3.9739 5.4299 35 1 4.7202 -1.6869 -1.3732 36 1 4.8230 -1.7781 0.4660 37 1 7.9357 0.0424 -5.1699 38 1 9.3629 1.2871 -3.4809 39 1 8.3135 2.3849 -0.6480 40 1 8.5075 0.8057 0.1499 41 1 9.7619 1.4000 -0.9642 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292313177.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:21 Heat of formation + Delta-G solvation = 23.860326 kcal Electronic energy + Delta-G solvation = -22349.137194 eV Core-core repulsion = 19128.398053 eV Total energy + Delta-G solvation = -3220.739142 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.16446 -39.42803 -37.62843 -36.97266 -35.09041 -33.66925 -31.77863 -29.95877 -28.59697 -26.94781 -26.04932 -24.34927 -23.59547 -22.47579 -21.12262 -19.84310 -19.51938 -18.65332 -18.24695 -17.79520 -17.24511 -16.36193 -16.25214 -16.08690 -15.59310 -14.95332 -14.91286 -14.77563 -14.24155 -14.19642 -14.03537 -13.53340 -13.37394 -13.20963 -13.00738 -13.00287 -12.93044 -12.75370 -12.60831 -12.45874 -12.25902 -12.21245 -11.82691 -11.71758 -11.60765 -11.45097 -10.67344 -10.65536 -10.29978 -9.50217 -9.38952 -9.19788 -8.23459 -6.38473 0.02446 0.69951 1.08883 1.33135 1.35546 1.39628 1.46830 1.59175 1.80381 2.30815 2.44491 2.87864 3.06081 3.45182 3.62971 3.71790 3.98541 4.09508 4.11511 4.16151 4.27347 4.45456 4.51828 4.55475 4.62289 4.69437 4.77134 4.80245 4.90977 4.99910 5.01867 5.07225 5.14196 5.18996 5.21165 5.50282 5.56392 5.62643 5.72079 5.75678 5.96149 6.04750 6.66857 6.74545 7.25889 7.43552 8.83627 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.014229 B = 0.004116 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.272386 B = 6801.266837 C = 8012.660911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.180 4.180 3 C 0.133 3.867 4 N -0.592 5.592 5 C 0.265 3.735 6 C -0.545 4.545 7 H 0.052 0.948 8 C 0.010 3.990 9 N -0.927 5.927 10 Si 0.966 3.034 11 H -0.260 1.260 12 H -0.277 1.277 13 H -0.278 1.278 14 C 0.528 3.472 15 O -0.594 6.594 16 C -0.172 4.172 17 H 0.140 0.860 18 C -0.121 4.121 19 C -0.057 4.057 20 H 0.111 0.889 21 C -0.170 4.170 22 S 0.113 5.887 23 C -0.209 4.209 24 C -0.139 4.139 25 C -0.111 4.111 26 C -0.097 4.097 27 H 0.118 0.882 28 H 0.097 0.903 29 H 0.116 0.884 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.022 0.978 33 H -0.003 1.003 34 H 0.268 0.732 35 H 0.131 0.869 36 H 0.103 0.897 37 H 0.192 0.808 38 H 0.159 0.841 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.702 -9.230 -20.392 23.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.199 4.199 3 C 0.011 3.989 4 N -0.321 5.321 5 C 0.144 3.856 6 C -0.584 4.584 7 H 0.070 0.930 8 C -0.189 4.189 9 N -0.567 5.567 10 Si 0.790 3.210 11 H -0.185 1.185 12 H -0.202 1.202 13 H -0.204 1.204 14 C 0.317 3.683 15 O -0.475 6.475 16 C -0.193 4.193 17 H 0.158 0.842 18 C -0.159 4.159 19 C -0.078 4.078 20 H 0.129 0.871 21 C -0.286 4.286 22 S 0.378 5.622 23 C -0.344 4.344 24 C -0.169 4.169 25 C -0.124 4.124 26 C -0.156 4.156 27 H 0.136 0.864 28 H 0.116 0.884 29 H 0.134 0.866 30 H 0.094 0.906 31 H 0.120 0.880 32 H 0.040 0.960 33 H 0.015 0.985 34 H 0.077 0.923 35 H 0.149 0.851 36 H 0.121 0.879 37 H 0.209 0.791 38 H 0.177 0.823 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.766 -10.058 -20.253 23.337 hybrid contribution 1.172 1.913 1.301 2.593 sum 6.939 -8.145 -18.952 21.764 Atomic orbital electron populations 1.24041 0.95488 1.02854 0.98467 1.23302 0.96703 0.98181 1.01711 1.20831 0.92544 0.96511 0.88971 1.48116 1.11465 1.59426 1.13137 1.18702 0.93880 0.92715 0.80281 1.21663 1.40801 0.94433 1.01457 0.93006 1.25835 0.94563 1.03731 0.94773 1.70044 1.42663 1.38208 1.05754 0.85494 0.78502 0.79018 0.77970 1.18459 1.20164 1.20362 1.20171 0.81507 0.77370 0.89281 1.90625 1.54108 1.58847 1.43953 1.22346 1.00568 1.00244 0.96139 0.84195 1.23173 0.98712 0.88952 1.05055 1.20320 0.88992 1.03705 0.94767 0.87104 1.23534 1.00740 1.07279 0.97090 1.83940 1.27064 1.53549 0.97617 1.25956 0.98962 1.04844 1.04671 1.20228 1.02836 1.02810 0.91061 1.19102 0.95983 1.00415 0.96855 1.20539 1.00496 0.99599 0.94944 0.86409 0.88447 0.86635 0.90586 0.88050 0.95979 0.98498 0.92349 0.85130 0.87864 0.79070 0.82322 0.92011 0.92592 0.89586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.16 14.32 67.78 0.97 -3.19 16 2 C -0.18 -4.95 9.85 25.65 0.25 -4.70 16 3 C 0.13 4.38 5.67 85.63 0.49 4.86 16 4 N -0.59 -26.06 2.44 -830.51 -2.03 -28.09 16 5 C 0.27 14.70 5.16 85.64 0.44 15.14 16 6 C -0.55 -32.09 9.39 25.60 0.24 -31.85 16 7 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 8 C 0.01 0.59 5.46 84.65 0.46 1.06 16 9 N -0.93 -56.77 13.29 21.45 0.28 -56.48 16 10 Si 0.97 45.48 29.54 68.60 2.03 47.50 16 11 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 12 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 13 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 14 C 0.53 22.88 7.46 87.66 0.65 23.54 16 15 O -0.59 -31.67 15.84 -3.02 -0.05 -31.72 16 16 C -0.17 -5.27 4.99 -11.54 -0.06 -5.32 16 17 H 0.14 3.72 6.44 -2.39 -0.02 3.71 16 18 C -0.12 -2.97 9.75 30.59 0.30 -2.67 16 19 C -0.06 -1.64 5.26 -11.54 -0.06 -1.71 16 20 H 0.11 3.73 6.46 -2.39 -0.02 3.71 16 21 C -0.17 -4.19 6.13 24.59 0.15 -4.04 16 22 S 0.11 2.11 22.16 -56.49 -1.25 0.85 16 23 C -0.21 -3.39 11.23 66.72 0.75 -2.64 16 24 C -0.14 -2.60 9.98 21.22 0.21 -2.38 16 25 C -0.11 -2.64 5.80 -20.92 -0.12 -2.76 16 26 C -0.10 -2.28 9.86 71.23 0.70 -1.58 16 27 H 0.12 2.32 8.06 -2.91 -0.02 2.29 16 28 H 0.10 2.39 7.84 -2.91 -0.02 2.36 16 29 H 0.12 2.94 8.06 -2.91 -0.02 2.91 16 30 H 0.08 2.62 7.72 -2.39 -0.02 2.61 16 31 H 0.10 2.72 5.99 -2.39 -0.01 2.71 16 32 H 0.02 1.25 8.07 -2.39 -0.02 1.23 16 33 H 0.00 -0.20 7.42 -2.39 -0.02 -0.22 16 34 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 35 H 0.13 2.41 7.27 -2.39 -0.02 2.39 16 36 H 0.10 2.65 8.14 -2.38 -0.02 2.63 16 37 H 0.19 1.89 8.06 -2.91 -0.02 1.87 16 38 H 0.16 2.21 8.06 -2.91 -0.02 2.18 16 39 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.06 1.47 6.76 -2.39 -0.02 1.45 16 41 H 0.09 1.57 8.13 -2.39 -0.02 1.55 16 Total: -1.00 -74.03 361.63 5.38 -68.64 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 1.02 Total: 17.53 kcal Atomic # 6 Polarization: -23.62 SS G_CDS: 5.38 Total: -18.24 kcal Atomic # 7 Polarization: -82.83 SS G_CDS: -1.74 Total: -84.57 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -0.05 Total: -31.72 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -1.25 Total: 0.85 kcal Total: -74.03 5.38 -68.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292313177.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.502 kcal (2) G-P(sol) polarization free energy of solvation -74.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds