Wall clock time and date at job start Tue Mar 31 2020 08:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50706 * 119.99942 * 2 1 4 4 N 1.46500 * 109.46949 * 234.99957 * 3 2 1 5 5 C 1.46508 * 120.00138 * 270.00242 * 4 3 2 6 6 C 1.50697 * 109.46938 * 89.99548 * 5 4 3 7 7 H 1.07997 * 120.00447 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99739 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99748 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00107 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47070 * 90.00021 * 10 8 6 12 12 H 1.48504 * 109.46938 * 209.99760 * 10 8 6 13 13 H 1.48490 * 109.47231 * 329.99991 * 10 8 6 14 14 C 1.34777 * 120.00124 * 89.99763 * 4 3 2 15 15 O 1.21280 * 120.00078 * 180.02562 * 14 4 3 16 16 C 1.50704 * 119.99819 * 0.02562 * 14 4 3 17 17 H 1.09000 * 115.55102 * 325.58061 * 16 14 4 18 18 C 1.52997 * 117.50037 * 111.25213 * 16 14 4 19 19 C 1.53002 * 117.49581 * 179.91321 * 16 14 4 20 20 H 1.08999 * 117.49740 * 145.02320 * 19 16 14 21 21 C 1.50698 * 117.49955 * 359.97438 * 19 16 14 22 22 S 1.75882 * 125.20542 * 300.02391 * 21 19 16 23 23 C 1.75886 * 90.96995 * 179.97438 * 22 21 19 24 24 C 1.33384 * 109.59510 * 0.02562 * 23 22 21 25 25 C 1.33389 * 125.20076 * 119.72259 * 21 19 16 26 26 C 1.50700 * 122.53993 * 0.02562 * 25 21 19 27 27 H 1.07991 * 120.00013 * 180.02562 * 1 2 3 28 28 H 1.08001 * 119.99708 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.00239 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47318 * 354.99343 * 3 2 1 31 31 H 1.09000 * 109.47161 * 114.99974 * 3 2 1 32 32 H 1.08995 * 109.47080 * 209.99999 * 5 4 3 33 33 H 1.09001 * 109.46349 * 329.99612 * 5 4 3 34 34 H 0.97003 * 119.99724 * 180.02562 * 9 8 6 35 35 H 1.08994 * 117.49698 * 214.98076 * 18 16 14 36 36 H 1.09005 * 117.49426 * 359.97438 * 18 16 14 37 37 H 1.08002 * 125.20120 * 180.02562 * 23 22 21 38 38 H 1.08004 * 122.54169 * 180.02562 * 24 23 22 39 39 H 1.08995 * 109.47220 * 89.99783 * 26 25 21 40 40 H 1.08997 * 109.46986 * 210.00168 * 26 25 21 41 41 H 1.08999 * 109.47348 * 329.99706 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3319 -1.1314 5 6 4.3590 0.8256 -0.9695 6 6 4.3924 -0.6439 -1.3018 7 1 3.4875 -1.1500 -1.6038 8 6 5.5785 -1.3423 -1.2202 9 7 6.6805 -0.7260 -0.8518 10 14 5.6202 -3.1636 -1.6328 11 1 5.9055 -3.3370 -3.0798 12 1 6.6830 -3.8275 -0.8358 13 1 4.3056 -3.7744 -1.3108 14 6 2.5937 1.8222 -2.3214 15 8 3.3636 1.8439 -3.2582 16 6 1.1895 2.3435 -2.4879 17 1 0.4229 1.8203 -1.9162 18 6 1.0145 3.8498 -2.6910 19 6 0.7967 2.8888 -3.8624 20 1 -0.2283 2.7248 -4.1948 21 6 1.8438 2.8641 -4.9459 22 16 3.3967 3.6869 -4.8744 23 6 3.8232 3.0844 -6.4708 24 6 2.8271 2.3364 -6.9475 25 6 1.7371 2.2101 -6.1036 26 6 0.5200 1.3993 -6.4674 27 1 -0.5400 -0.9352 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1317 -0.0897 31 1 2.6213 1.4027 0.9314 32 1 5.0284 1.3650 -1.6395 33 1 4.6809 0.9725 0.0615 34 1 7.5149 -1.2173 -0.7948 35 1 0.1327 4.3175 -2.2532 36 1 1.9151 4.4638 -2.7037 37 1 4.7500 3.2888 -6.9862 38 1 2.8698 1.8609 -7.9164 39 1 -0.1985 2.0348 -6.9852 40 1 0.8131 0.5764 -7.1191 41 1 0.0649 1.0004 -5.5608 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292313183.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:23 Heat of formation + Delta-G solvation = 54.342788 kcal Electronic energy + Delta-G solvation = -23206.146933 eV Core-core repulsion = 19986.729610 eV Total energy + Delta-G solvation = -3219.417323 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.70959 -37.86836 -36.19005 -35.37853 -33.08937 -32.00190 -30.48255 -27.93108 -27.20601 -25.62820 -24.17071 -23.07458 -21.89578 -21.17805 -19.78455 -18.75368 -18.02499 -16.76222 -16.49725 -16.16925 -15.17209 -15.01302 -14.66735 -14.43391 -14.17816 -13.64661 -13.56036 -13.11321 -12.94253 -12.70822 -12.39505 -12.14231 -12.03915 -11.83202 -11.73970 -11.51666 -11.31016 -11.22430 -10.98180 -10.81870 -10.64294 -10.45209 -10.23434 -10.13891 -10.02631 -9.57049 -9.16390 -8.93348 -8.40955 -7.87090 -7.73608 -7.15928 -6.02261 -4.05829 1.47761 2.26582 2.54448 2.60316 3.06609 3.31576 3.33084 3.37948 3.40633 3.97622 4.14884 4.46086 4.73433 4.91209 5.00604 5.26995 5.31095 5.32325 5.34014 5.40406 5.50256 5.65859 5.70101 5.72107 5.81148 5.84076 5.86372 5.99004 6.02081 6.06189 6.19425 6.29363 6.55985 6.88974 6.96775 7.00088 7.02283 7.11579 7.46730 7.58916 7.94609 8.26550 8.45718 8.93831 9.16372 9.58947 11.05770 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.012206 B = 0.005781 C = 0.004777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.384253 B = 4842.687181 C = 5859.473393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.143 4.143 3 C 0.138 3.862 4 N -0.591 5.591 5 C 0.248 3.752 6 C -0.519 4.519 7 H 0.057 0.943 8 C 0.061 3.939 9 N -0.895 5.895 10 Si 0.894 3.106 11 H -0.280 1.280 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.525 3.475 15 O -0.512 6.512 16 C -0.176 4.176 17 H 0.124 0.876 18 C -0.155 4.155 19 C -0.054 4.054 20 H 0.123 0.877 21 C -0.134 4.134 22 S 0.183 5.817 23 C -0.236 4.236 24 C -0.137 4.137 25 C -0.119 4.119 26 C -0.087 4.087 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.121 0.879 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.044 0.956 33 H 0.030 0.970 34 H 0.262 0.738 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.153 0.847 38 H 0.127 0.873 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.654 9.076 -4.189 16.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.162 4.162 3 C 0.014 3.986 4 N -0.322 5.322 5 C 0.129 3.871 6 C -0.558 4.558 7 H 0.075 0.925 8 C -0.141 4.141 9 N -0.535 5.535 10 Si 0.722 3.278 11 H -0.206 1.206 12 H -0.212 1.212 13 H -0.200 1.200 14 C 0.311 3.689 15 O -0.389 6.389 16 C -0.198 4.198 17 H 0.142 0.858 18 C -0.193 4.193 19 C -0.074 4.074 20 H 0.141 0.859 21 C -0.252 4.252 22 S 0.452 5.548 23 C -0.372 4.372 24 C -0.169 4.169 25 C -0.132 4.132 26 C -0.146 4.146 27 H 0.111 0.889 28 H 0.108 0.892 29 H 0.139 0.861 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.062 0.938 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.126 0.874 36 H 0.117 0.883 37 H 0.171 0.829 38 H 0.145 0.855 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.202 10.017 -3.568 16.185 hybrid contribution -0.509 -2.379 -1.086 2.664 sum -12.710 7.637 -4.654 15.542 Atomic orbital electron populations 1.23691 0.95777 1.01137 1.04443 1.23664 0.95837 1.00520 0.96186 1.20571 0.92451 0.94364 0.91182 1.48192 1.14739 1.60194 1.09126 1.19284 0.76167 0.94314 0.97349 1.21430 0.94731 0.94119 1.45551 0.92451 1.24915 0.95449 0.98447 0.95249 1.69931 0.99382 1.36277 1.47884 0.86562 0.77603 0.85133 0.78507 1.20634 1.21199 1.20003 1.19478 0.87212 0.78970 0.83219 1.90880 1.55158 1.54963 1.37860 1.22627 0.98551 0.97711 1.00891 0.85792 1.23118 1.03752 0.91069 1.01312 1.20374 0.97267 1.03500 0.86284 0.85936 1.23238 0.98568 1.05740 0.97625 1.83700 1.11887 1.46531 1.12643 1.25536 1.03626 1.08248 0.99833 1.19737 0.93691 1.02502 1.00983 1.18497 0.98045 1.02017 0.94618 1.20402 0.94570 0.98246 1.01356 0.88882 0.89159 0.86143 0.91257 0.89868 0.93776 0.95189 0.92820 0.87431 0.88343 0.82889 0.85550 0.92189 0.92097 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.74 13.48 29.01 0.39 -2.35 16 2 C -0.14 -2.28 9.68 -36.02 -0.35 -2.63 16 3 C 0.14 2.24 5.54 -5.19 -0.03 2.22 16 4 N -0.59 -12.32 2.44 -176.43 -0.43 -12.75 16 5 C 0.25 6.38 5.20 -5.19 -0.03 6.35 16 6 C -0.52 -14.56 9.28 -34.44 -0.32 -14.88 16 7 H 0.06 1.62 7.45 -52.49 -0.39 1.23 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 10 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 11 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 C 0.53 10.71 7.42 -10.98 -0.08 10.63 16 15 O -0.51 -12.13 10.92 5.56 0.06 -12.07 16 16 C -0.18 -2.67 4.79 -91.77 -0.44 -3.11 16 17 H 0.12 1.66 6.09 -51.93 -0.32 1.34 16 18 C -0.15 -1.92 9.75 -26.69 -0.26 -2.18 16 19 C -0.05 -0.76 5.47 -91.73 -0.50 -1.26 16 20 H 0.12 1.40 7.55 -51.93 -0.39 1.01 16 21 C -0.13 -2.22 4.60 -36.00 -0.17 -2.39 16 22 S 0.18 3.15 18.92 -107.50 -2.03 1.12 16 23 C -0.24 -3.86 11.23 29.04 0.33 -3.54 16 24 C -0.14 -2.20 9.98 -41.21 -0.41 -2.61 16 25 C -0.12 -1.93 5.80 -106.25 -0.62 -2.55 16 26 C -0.09 -1.12 9.72 36.01 0.35 -0.77 16 27 H 0.09 1.12 8.06 -52.49 -0.42 0.70 16 28 H 0.09 0.97 7.68 -52.49 -0.40 0.57 16 29 H 0.12 2.25 7.59 -52.49 -0.40 1.85 16 30 H 0.07 0.92 6.29 -51.93 -0.33 0.59 16 31 H 0.08 1.31 7.89 -51.93 -0.41 0.90 16 32 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 33 H 0.03 0.79 7.89 -51.93 -0.41 0.38 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.10 1.33 7.27 -51.93 -0.38 0.96 16 37 H 0.15 2.15 8.06 -52.49 -0.42 1.73 16 38 H 0.13 1.74 8.06 -52.48 -0.42 1.31 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 41 H 0.06 0.80 7.25 -51.93 -0.38 0.42 16 LS Contribution 351.11 15.07 5.29 5.29 Total: -1.00 -32.46 351.11 -9.49 -41.94 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -5.86 Total: 2.67 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: -2.23 Total: -17.41 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.31 Total: -38.63 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.06 Total: -12.07 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Atomic # 16 Polarization: 3.15 SS G_CDS: -2.03 Total: 1.12 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.46 -9.49 -41.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292313183.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.287 kcal (2) G-P(sol) polarization free energy of solvation -32.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds