Wall clock time and date at job start Tue Mar 31 2020 08:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 120.00204 * 2 1 4 4 N 1.46499 * 109.47476 * 124.99788 * 3 2 1 5 5 C 1.46493 * 120.00030 * 270.00335 * 4 3 2 6 6 C 1.50702 * 109.46843 * 269.99842 * 5 4 3 7 7 H 1.08000 * 120.00505 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00099 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00338 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 119.99703 * 0.02562 * 8 6 5 11 11 H 1.48492 * 109.47371 * 90.00141 * 10 8 6 12 12 H 1.48507 * 109.46869 * 210.00170 * 10 8 6 13 13 H 1.48498 * 109.47180 * 329.99755 * 10 8 6 14 14 C 1.34776 * 119.99841 * 90.00094 * 4 3 2 15 15 O 1.21281 * 120.00284 * 180.02562 * 14 4 3 16 16 C 1.50701 * 119.99929 * 359.97438 * 14 4 3 17 17 H 1.09005 * 115.56418 * 34.31730 * 16 14 4 18 18 C 1.53071 * 117.51476 * 248.60805 * 16 14 4 19 19 C 1.53002 * 59.98578 * 252.52161 * 18 16 14 20 20 H 1.08994 * 117.50308 * 252.49363 * 19 18 16 21 21 C 1.50707 * 117.49373 * 107.49860 * 19 18 16 22 22 S 1.75887 * 125.20273 * 351.57858 * 21 19 18 23 23 C 1.75886 * 90.96789 * 180.02562 * 22 21 19 24 24 C 1.33391 * 109.59495 * 359.68563 * 23 22 21 25 25 C 1.33390 * 125.20097 * 171.25465 * 21 19 18 26 26 C 1.50702 * 122.53892 * 0.06176 * 25 21 19 27 27 H 1.07997 * 120.00159 * 0.02562 * 1 2 3 28 28 H 1.07997 * 119.99736 * 180.02562 * 1 2 3 29 29 H 1.07997 * 120.00159 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.46749 * 4.99555 * 3 2 1 31 31 H 1.09003 * 109.46723 * 245.00232 * 3 2 1 32 32 H 1.09001 * 109.47549 * 29.99979 * 5 4 3 33 33 H 1.09005 * 109.47371 * 150.00140 * 5 4 3 34 34 H 0.96998 * 120.00036 * 179.97438 * 9 8 6 35 35 H 1.09005 * 117.49491 * 145.04269 * 18 16 14 36 36 H 1.09000 * 117.51795 * 0.02562 * 18 16 14 37 37 H 1.08002 * 125.20558 * 179.97438 * 23 22 21 38 38 H 1.07995 * 122.54101 * 180.26478 * 24 23 22 39 39 H 1.09001 * 109.46714 * 269.99748 * 26 25 21 40 40 H 1.08998 * 109.46934 * 29.99871 * 26 25 21 41 41 H 1.08992 * 109.46996 * 150.00145 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5589 1.8650 2.4248 6 6 2.8443 3.3437 2.4802 7 1 3.3041 3.8370 1.6366 8 6 2.5194 4.0667 3.6084 9 7 2.7689 5.3570 3.6571 10 14 1.7261 3.2131 5.0684 11 1 2.7828 2.7229 5.9894 12 1 0.8497 4.1730 5.7867 13 1 0.9150 2.0650 4.5898 14 6 4.2497 0.8662 0.9824 15 8 5.0198 0.8880 1.9191 16 6 4.6969 0.3173 -0.3480 17 1 4.2712 0.8048 -1.2251 18 6 4.9683 -1.1865 -0.4373 19 6 6.1344 -0.1961 -0.4533 20 1 6.6544 -0.0461 -1.3993 21 6 6.9946 -0.1143 0.7815 22 16 6.6482 -0.9070 2.3129 23 6 8.1148 -0.2438 3.0220 24 6 8.7566 0.4938 2.1146 25 6 8.1383 0.5654 0.8781 26 6 8.7135 1.3518 -0.2715 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5399 -0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6213 1.4025 -0.9314 32 1 1.4888 1.6967 2.5459 33 1 3.0990 1.3604 3.2259 34 1 2.5400 5.8657 4.4506 35 1 4.7210 -1.6878 -1.3732 36 1 4.8230 -1.7790 0.4659 37 1 8.4475 -0.4121 4.0356 38 1 9.6880 0.9968 2.3282 39 1 9.3722 0.7102 -0.8569 40 1 7.9039 1.7152 -0.9042 41 1 9.2806 2.1984 0.1152 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292313185.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:25 Heat of formation + Delta-G solvation = 59.982754 kcal Electronic energy + Delta-G solvation = -23098.828832 eV Core-core repulsion = 19879.656076 eV Total energy + Delta-G solvation = -3219.172756 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.78460 -37.92397 -36.28109 -35.44014 -33.12883 -32.08314 -30.51348 -28.58203 -27.29987 -25.58084 -24.22541 -23.10771 -21.70572 -21.14096 -19.99681 -18.77841 -18.01136 -16.89635 -16.76191 -16.34824 -15.45849 -15.04842 -14.62197 -14.40989 -14.28427 -13.80702 -13.59323 -13.12572 -13.03265 -12.72970 -12.42239 -12.32028 -12.07226 -11.85276 -11.66657 -11.63030 -11.57375 -11.33227 -11.16576 -10.91082 -10.64013 -10.47879 -10.30337 -10.12804 -10.07692 -9.53238 -9.25866 -9.03629 -8.56489 -7.92307 -7.77593 -7.21662 -6.06413 -4.04507 1.44024 2.22135 2.38062 2.56027 3.02383 3.27689 3.30191 3.36146 3.38171 3.86099 4.09739 4.41409 4.66845 4.84651 4.89218 5.15835 5.23388 5.27986 5.30267 5.34215 5.37981 5.59142 5.67565 5.70822 5.77272 5.82584 5.84041 5.92438 5.99858 6.02676 6.17838 6.19204 6.52863 6.73599 6.73697 6.86069 6.87169 6.98347 6.99297 7.40590 7.64109 8.29203 8.49901 8.96549 9.05564 9.54370 11.07087 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.012072 B = 0.005896 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.891915 B = 4747.634535 C = 6008.227214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.164 4.164 3 C 0.136 3.864 4 N -0.584 5.584 5 C 0.220 3.780 6 C -0.525 4.525 7 H 0.074 0.926 8 C 0.073 3.927 9 N -0.898 5.898 10 Si 0.874 3.126 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.525 3.475 15 O -0.511 6.511 16 C -0.174 4.174 17 H 0.125 0.875 18 C -0.152 4.152 19 C -0.053 4.053 20 H 0.124 0.876 21 C -0.132 4.132 22 S 0.173 5.827 23 C -0.235 4.235 24 C -0.135 4.135 25 C -0.118 4.118 26 C -0.087 4.087 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.028 0.972 33 H 0.036 0.964 34 H 0.264 0.736 35 H 0.108 0.892 36 H 0.097 0.903 37 H 0.154 0.846 38 H 0.128 0.872 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.773 -14.387 -10.184 18.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.184 4.184 3 C 0.012 3.988 4 N -0.315 5.315 5 C 0.099 3.901 6 C -0.564 4.564 7 H 0.092 0.908 8 C -0.129 4.129 9 N -0.537 5.537 10 Si 0.701 3.299 11 H -0.200 1.200 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.311 3.689 15 O -0.388 6.388 16 C -0.196 4.196 17 H 0.143 0.857 18 C -0.190 4.190 19 C -0.074 4.074 20 H 0.142 0.858 21 C -0.251 4.251 22 S 0.443 5.557 23 C -0.371 4.371 24 C -0.167 4.167 25 C -0.130 4.130 26 C -0.146 4.146 27 H 0.117 0.883 28 H 0.112 0.888 29 H 0.123 0.877 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.046 0.954 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.127 0.873 36 H 0.116 0.884 37 H 0.171 0.829 38 H 0.146 0.854 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.992 -15.156 -8.934 18.041 hybrid contribution 0.509 0.900 0.400 1.109 sum 4.501 -14.256 -8.535 17.214 Atomic orbital electron populations 1.23829 0.95893 1.01736 1.01029 1.23459 0.96284 0.99155 0.99483 1.20602 0.93056 0.95190 0.89916 1.47858 1.10618 1.60205 1.12799 1.19615 0.94713 0.95078 0.80669 1.21327 1.40864 0.91164 1.03009 0.90799 1.24838 0.95333 0.94701 0.98063 1.69896 1.47931 1.06612 1.29230 0.86888 0.79869 0.79695 0.83485 1.19967 1.21108 1.19054 1.19504 0.82167 0.78898 0.88297 1.90887 1.51432 1.54785 1.41710 1.22556 0.99675 0.98049 0.99310 0.85691 1.23110 1.01361 0.90719 1.03835 1.20387 0.87730 1.03284 0.95979 0.85789 1.23220 0.98558 1.05691 0.97582 1.83642 1.20924 1.46392 1.04744 1.25519 1.00029 1.08032 1.03539 1.19760 1.01690 1.02474 0.92762 1.18518 0.96142 1.01805 0.96530 1.20412 1.00269 0.98470 0.95489 0.88305 0.88825 0.87697 0.89482 0.90500 0.95428 0.94609 0.92636 0.87348 0.88431 0.82880 0.85433 0.92150 0.91927 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.29 14.32 29.01 0.42 -1.87 16 2 C -0.16 -2.21 9.85 -36.03 -0.35 -2.56 16 3 C 0.14 2.15 5.67 -5.19 -0.03 2.12 16 4 N -0.58 -11.90 2.44 -176.44 -0.43 -12.33 16 5 C 0.22 5.40 4.23 -5.20 -0.02 5.37 16 6 C -0.53 -15.18 9.94 -34.44 -0.34 -15.52 16 7 H 0.07 2.35 8.06 -52.49 -0.42 1.93 16 8 C 0.07 2.14 5.47 -17.82 -0.10 2.05 16 9 N -0.90 -28.00 13.96 55.43 0.77 -27.22 16 10 Si 0.87 21.91 27.47 -169.99 -4.67 17.24 16 11 H -0.27 -6.94 7.11 56.52 0.40 -6.53 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 14 C 0.53 10.44 7.43 -10.98 -0.08 10.36 16 15 O -0.51 -11.86 10.94 5.56 0.06 -11.80 16 16 C -0.17 -2.53 5.29 -91.73 -0.49 -3.01 16 17 H 0.13 1.54 6.44 -51.93 -0.33 1.20 16 18 C -0.15 -1.79 9.75 -26.69 -0.26 -2.06 16 19 C -0.05 -0.72 5.47 -91.77 -0.50 -1.22 16 20 H 0.12 1.36 7.53 -51.93 -0.39 0.97 16 21 C -0.13 -2.16 4.59 -36.00 -0.17 -2.32 16 22 S 0.17 2.92 18.93 -107.50 -2.04 0.88 16 23 C -0.23 -3.78 11.23 29.04 0.33 -3.45 16 24 C -0.14 -2.14 9.98 -41.21 -0.41 -2.55 16 25 C -0.12 -1.88 5.80 -106.25 -0.62 -2.50 16 26 C -0.09 -1.12 9.72 36.01 0.35 -0.77 16 27 H 0.10 1.20 7.84 -52.49 -0.41 0.79 16 28 H 0.09 0.98 8.06 -52.49 -0.42 0.55 16 29 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 30 H 0.09 1.46 7.72 -51.93 -0.40 1.05 16 31 H 0.08 1.03 6.00 -51.93 -0.31 0.72 16 32 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 33 H 0.04 0.94 6.85 -51.93 -0.36 0.59 16 34 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 35 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.10 1.26 7.27 -51.93 -0.38 0.88 16 37 H 0.15 2.10 8.06 -52.49 -0.42 1.68 16 38 H 0.13 1.74 8.06 -52.49 -0.42 1.31 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.80 7.24 -51.93 -0.38 0.42 16 41 H 0.06 0.77 8.13 -51.93 -0.42 0.34 16 LS Contribution 350.25 15.07 5.28 5.28 Total: -1.00 -34.09 350.25 -9.18 -43.26 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -5.88 Total: 2.64 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: -2.28 Total: -17.94 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.34 Total: -39.56 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.06 Total: -11.80 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -2.04 Total: 0.88 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.09 -9.18 -43.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292313185.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.245 kcal (2) G-P(sol) polarization free energy of solvation -34.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds