Wall clock time and date at job start Tue Mar 31 2020 08:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 120.00204 * 2 1 4 4 N 1.46499 * 109.47476 * 124.99788 * 3 2 1 5 5 C 1.46493 * 120.00030 * 270.00335 * 4 3 2 6 6 C 1.50702 * 109.46843 * 269.99842 * 5 4 3 7 7 H 1.08000 * 120.00505 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00099 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00338 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 119.99703 * 0.02562 * 8 6 5 11 11 H 1.48492 * 109.47371 * 90.00141 * 10 8 6 12 12 H 1.48507 * 109.46869 * 210.00170 * 10 8 6 13 13 H 1.48498 * 109.47180 * 329.99755 * 10 8 6 14 14 C 1.34776 * 119.99841 * 90.00094 * 4 3 2 15 15 O 1.21281 * 120.00284 * 180.02562 * 14 4 3 16 16 C 1.50701 * 119.99929 * 359.97438 * 14 4 3 17 17 H 1.09005 * 115.56418 * 34.31730 * 16 14 4 18 18 C 1.53071 * 117.51476 * 248.60805 * 16 14 4 19 19 C 1.53002 * 59.98578 * 252.52161 * 18 16 14 20 20 H 1.08994 * 117.50308 * 252.49363 * 19 18 16 21 21 C 1.50707 * 117.49373 * 107.49860 * 19 18 16 22 22 S 1.75887 * 125.20273 * 351.57858 * 21 19 18 23 23 C 1.75886 * 90.96789 * 180.02562 * 22 21 19 24 24 C 1.33391 * 109.59495 * 359.68563 * 23 22 21 25 25 C 1.33390 * 125.20097 * 171.25465 * 21 19 18 26 26 C 1.50702 * 122.53892 * 0.06176 * 25 21 19 27 27 H 1.07997 * 120.00159 * 0.02562 * 1 2 3 28 28 H 1.07997 * 119.99736 * 180.02562 * 1 2 3 29 29 H 1.07997 * 120.00159 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.46749 * 4.99555 * 3 2 1 31 31 H 1.09003 * 109.46723 * 245.00232 * 3 2 1 32 32 H 1.09001 * 109.47549 * 29.99979 * 5 4 3 33 33 H 1.09005 * 109.47371 * 150.00140 * 5 4 3 34 34 H 0.96998 * 120.00036 * 179.97438 * 9 8 6 35 35 H 1.09005 * 117.49491 * 145.04269 * 18 16 14 36 36 H 1.09000 * 117.51795 * 0.02562 * 18 16 14 37 37 H 1.08002 * 125.20558 * 179.97438 * 23 22 21 38 38 H 1.07995 * 122.54101 * 180.26478 * 24 23 22 39 39 H 1.09001 * 109.46714 * 269.99748 * 26 25 21 40 40 H 1.08998 * 109.46934 * 29.99871 * 26 25 21 41 41 H 1.08992 * 109.46996 * 150.00145 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5589 1.8650 2.4248 6 6 2.8443 3.3437 2.4802 7 1 3.3041 3.8370 1.6366 8 6 2.5194 4.0667 3.6084 9 7 2.7689 5.3570 3.6571 10 14 1.7261 3.2131 5.0684 11 1 2.7828 2.7229 5.9894 12 1 0.8497 4.1730 5.7867 13 1 0.9150 2.0650 4.5898 14 6 4.2497 0.8662 0.9824 15 8 5.0198 0.8880 1.9191 16 6 4.6969 0.3173 -0.3480 17 1 4.2712 0.8048 -1.2251 18 6 4.9683 -1.1865 -0.4373 19 6 6.1344 -0.1961 -0.4533 20 1 6.6544 -0.0461 -1.3993 21 6 6.9946 -0.1143 0.7815 22 16 6.6482 -0.9070 2.3129 23 6 8.1148 -0.2438 3.0220 24 6 8.7566 0.4938 2.1146 25 6 8.1383 0.5654 0.8781 26 6 8.7135 1.3518 -0.2715 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5399 -0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6213 1.4025 -0.9314 32 1 1.4888 1.6967 2.5459 33 1 3.0990 1.3604 3.2259 34 1 2.5400 5.8657 4.4506 35 1 4.7210 -1.6878 -1.3732 36 1 4.8230 -1.7790 0.4659 37 1 8.4475 -0.4121 4.0356 38 1 9.6880 0.9968 2.3282 39 1 9.3722 0.7102 -0.8569 40 1 7.9039 1.7152 -0.9042 41 1 9.2806 2.1984 0.1152 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292313185.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:24 Heat of formation + Delta-G solvation = 40.407916 kcal Electronic energy + Delta-G solvation = -23099.677660 eV Core-core repulsion = 19879.656076 eV Total energy + Delta-G solvation = -3220.021584 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.14257 -39.16547 -37.54109 -36.79703 -35.01405 -33.70425 -31.65898 -30.45155 -28.43878 -26.88201 -25.84724 -24.21562 -23.26989 -22.37705 -21.10349 -20.00011 -19.36709 -19.06118 -18.05502 -17.69495 -16.92003 -16.37064 -16.09597 -15.95004 -15.46680 -15.18914 -14.83232 -14.67647 -14.30420 -14.20093 -13.86093 -13.67636 -13.53988 -13.12485 -13.07966 -12.96310 -12.82272 -12.59506 -12.54261 -12.37482 -12.25756 -11.95262 -11.74914 -11.67678 -11.36685 -11.28058 -10.84633 -10.52733 -10.28330 -9.43888 -9.05714 -8.56412 -8.35190 -6.38922 0.22639 1.02024 1.27902 1.32078 1.32501 1.38510 1.41362 1.75305 1.98121 2.28282 2.45002 2.99110 2.99503 3.55236 3.73227 3.88061 4.02685 4.14778 4.18153 4.28234 4.33494 4.52082 4.61917 4.68335 4.70035 4.75389 4.83508 4.85518 4.90455 4.91606 5.01972 5.08063 5.11599 5.18899 5.33239 5.46457 5.59429 5.68397 5.74737 5.83825 5.96188 6.25527 6.62246 6.78490 7.22280 7.55090 8.81916 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.012072 B = 0.005896 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.891915 B = 4747.634535 C = 6008.227214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.175 4.175 3 C 0.133 3.867 4 N -0.594 5.594 5 C 0.233 3.767 6 C -0.529 4.529 7 H 0.028 0.972 8 C 0.012 3.988 9 N -0.945 5.945 10 Si 0.943 3.057 11 H -0.278 1.278 12 H -0.274 1.274 13 H -0.241 1.241 14 C 0.512 3.488 15 O -0.554 6.554 16 C -0.183 4.183 17 H 0.152 0.848 18 C -0.123 4.123 19 C -0.061 4.061 20 H 0.157 0.843 21 C -0.141 4.141 22 S 0.135 5.865 23 C -0.250 4.250 24 C -0.146 4.146 25 C -0.138 4.138 26 C -0.084 4.084 27 H 0.096 0.904 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.040 0.960 33 H 0.016 0.984 34 H 0.267 0.733 35 H 0.154 0.846 36 H 0.083 0.917 37 H 0.168 0.832 38 H 0.146 0.854 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.972 -16.550 -11.841 20.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.194 4.194 3 C 0.011 3.989 4 N -0.325 5.325 5 C 0.111 3.889 6 C -0.568 4.568 7 H 0.046 0.954 8 C -0.185 4.185 9 N -0.586 5.586 10 Si 0.766 3.234 11 H -0.204 1.204 12 H -0.199 1.199 13 H -0.164 1.164 14 C 0.300 3.700 15 O -0.434 6.434 16 C -0.205 4.205 17 H 0.169 0.831 18 C -0.161 4.161 19 C -0.081 4.081 20 H 0.174 0.826 21 C -0.259 4.259 22 S 0.404 5.596 23 C -0.386 4.386 24 C -0.178 4.178 25 C -0.150 4.150 26 C -0.143 4.143 27 H 0.114 0.886 28 H 0.135 0.865 29 H 0.136 0.864 30 H 0.088 0.912 31 H 0.120 0.880 32 H 0.058 0.942 33 H 0.034 0.966 34 H 0.076 0.924 35 H 0.171 0.829 36 H 0.102 0.898 37 H 0.186 0.814 38 H 0.163 0.837 39 H 0.104 0.896 40 H 0.082 0.918 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.173 -17.340 -10.640 20.591 hybrid contribution 0.809 1.646 0.870 2.030 sum 3.982 -15.695 -9.771 18.912 Atomic orbital electron populations 1.24048 0.95591 1.02773 0.98847 1.23302 0.96541 0.98153 1.01368 1.20802 0.92571 0.96251 0.89300 1.47925 1.11999 1.60103 1.12435 1.19166 0.94896 0.91947 0.82916 1.21553 1.40053 0.93543 1.01610 0.95393 1.25793 0.96039 0.95324 1.01381 1.70047 1.49624 1.08454 1.30454 0.85783 0.79069 0.79398 0.79129 1.20390 1.19891 1.16376 1.20482 0.81377 0.78108 0.90008 1.90876 1.52414 1.56370 1.43694 1.22485 1.00801 1.00437 0.96737 0.83056 1.23269 0.98653 0.88809 1.05325 1.20687 0.87343 1.04075 0.95990 0.82606 1.23623 0.99009 1.05392 0.97841 1.83649 1.22052 1.47381 1.06524 1.25795 0.99828 1.08508 1.04512 1.20132 1.02418 1.02305 0.92967 1.18994 0.96457 1.02062 0.97505 1.20455 1.00626 0.98549 0.94661 0.88610 0.86454 0.86392 0.91192 0.87970 0.94237 0.96568 0.92371 0.82857 0.89835 0.81441 0.83678 0.89574 0.91795 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.76 14.32 67.78 0.97 -2.79 16 2 C -0.17 -4.22 9.85 25.65 0.25 -3.97 16 3 C 0.13 4.04 5.67 85.63 0.49 4.52 16 4 N -0.59 -24.15 2.44 -830.51 -2.03 -26.17 16 5 C 0.23 11.58 4.23 85.64 0.36 11.95 16 6 C -0.53 -31.66 9.94 25.60 0.25 -31.41 16 7 H 0.03 1.87 8.06 -2.91 -0.02 1.85 16 8 C 0.01 0.75 5.47 84.66 0.46 1.21 16 9 N -0.95 -60.83 13.96 21.45 0.30 -60.53 16 10 Si 0.94 45.69 27.47 68.60 1.88 47.58 16 11 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 12 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 13 H -0.24 -10.57 6.54 99.48 0.65 -9.92 16 14 C 0.51 20.23 7.43 87.66 0.65 20.88 16 15 O -0.55 -26.31 10.94 -3.03 -0.03 -26.34 16 16 C -0.18 -4.88 5.29 -11.51 -0.06 -4.94 16 17 H 0.15 3.18 6.44 -2.38 -0.02 3.16 16 18 C -0.12 -2.47 9.75 30.62 0.30 -2.17 16 19 C -0.06 -1.49 5.47 -11.54 -0.06 -1.55 16 20 H 0.16 2.78 7.53 -2.39 -0.02 2.76 16 21 C -0.14 -4.48 4.59 24.59 0.11 -4.36 16 22 S 0.13 4.60 18.93 -56.49 -1.07 3.53 16 23 C -0.25 -8.22 11.23 66.72 0.75 -7.47 16 24 C -0.15 -4.64 9.98 21.22 0.21 -4.43 16 25 C -0.14 -4.32 5.80 -20.92 -0.12 -4.44 16 26 C -0.08 -2.01 9.72 71.24 0.69 -1.32 16 27 H 0.10 2.11 7.84 -2.91 -0.02 2.09 16 28 H 0.12 1.99 8.06 -2.91 -0.02 1.96 16 29 H 0.12 2.57 8.06 -2.91 -0.02 2.55 16 30 H 0.07 2.33 7.72 -2.39 -0.02 2.31 16 31 H 0.10 2.51 6.00 -2.39 -0.01 2.49 16 32 H 0.04 1.86 7.13 -2.39 -0.02 1.84 16 33 H 0.02 0.87 6.85 -2.38 -0.02 0.85 16 34 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 35 H 0.15 1.74 8.14 -2.38 -0.02 1.72 16 36 H 0.08 1.98 7.27 -2.39 -0.02 1.96 16 37 H 0.17 4.72 8.06 -2.91 -0.02 4.70 16 38 H 0.15 3.90 8.06 -2.91 -0.02 3.87 16 39 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.06 1.50 7.24 -2.39 -0.02 1.48 16 41 H 0.06 1.47 8.13 -2.39 -0.02 1.45 16 Total: -1.00 -78.42 350.25 5.28 -73.14 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 0.96 Total: 19.09 kcal Atomic # 6 Polarization: -35.55 SS G_CDS: 5.26 Total: -30.29 kcal Atomic # 7 Polarization: -84.98 SS G_CDS: -1.73 Total: -86.71 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.03 Total: -26.34 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.88 Total: 47.58 kcal Atomic # 16 Polarization: 4.60 SS G_CDS: -1.07 Total: 3.53 kcal Total: -78.42 5.28 -73.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292313185.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.550 kcal (2) G-P(sol) polarization free energy of solvation -78.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds