Wall clock time and date at job start Tue Mar 31 2020 08:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 119.99606 * 2 1 4 4 N 1.46502 * 109.46869 * 125.34709 * 3 2 1 5 5 C 1.46498 * 120.00323 * 85.08515 * 4 3 2 6 6 C 1.50701 * 109.46794 * 89.99986 * 5 4 3 7 7 H 1.08004 * 119.99928 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00103 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99839 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00404 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47513 * 89.99379 * 10 8 6 12 12 H 1.48497 * 109.47178 * 209.99938 * 10 8 6 13 13 H 1.48505 * 109.46720 * 329.99627 * 10 8 6 14 14 C 1.34781 * 119.99465 * 265.08785 * 4 3 2 15 15 O 1.21544 * 120.00452 * 4.59002 * 14 4 3 16 16 C 1.47871 * 119.99583 * 184.59030 * 14 4 3 17 17 C 1.39467 * 120.10533 * 302.00051 * 16 14 4 18 18 C 1.38706 * 119.76752 * 179.97438 * 17 16 14 19 19 S 1.76195 * 120.01097 * 180.02562 * 18 17 16 20 20 C 1.81398 * 103.00121 * 179.97438 * 19 18 17 21 21 C 1.39091 * 119.97974 * 359.97438 * 18 17 16 22 22 C 1.38180 * 120.21211 * 359.97438 * 21 18 17 23 23 C 1.38049 * 120.23493 * 359.74871 * 22 21 18 24 24 C 1.50701 * 119.98880 * 180.27390 * 23 22 21 25 25 H 1.08001 * 119.99792 * 174.99413 * 1 2 3 26 26 H 1.08005 * 120.00517 * 355.00057 * 1 2 3 27 27 H 1.07993 * 120.00202 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47219 * 5.34602 * 3 2 1 29 29 H 1.08998 * 109.47036 * 245.34212 * 3 2 1 30 30 H 1.08996 * 109.47066 * 209.99644 * 5 4 3 31 31 H 1.08998 * 109.47200 * 330.00220 * 5 4 3 32 32 H 0.97000 * 119.99493 * 180.02562 * 9 8 6 33 33 H 1.08004 * 120.11924 * 359.95367 * 17 16 14 34 34 H 1.09006 * 109.47197 * 179.97438 * 20 19 18 35 35 H 1.08994 * 109.47258 * 299.99910 * 20 19 18 36 36 H 1.09000 * 109.46778 * 60.00071 * 20 19 18 37 37 H 1.07999 * 119.89051 * 180.02562 * 21 18 17 38 38 H 1.07999 * 119.88068 * 179.97438 * 22 21 18 39 39 H 1.08999 * 109.46802 * 274.98809 * 24 23 22 40 40 H 1.09000 * 109.47503 * 34.99467 * 24 23 22 41 41 H 1.09001 * 109.46729 * 154.99134 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9996 1.3286 1.1266 5 6 4.3275 0.7256 0.9883 6 6 5.2997 1.7616 0.4856 7 1 4.9621 2.7686 0.2892 8 6 6.6199 1.4240 0.2763 9 7 7.0311 0.1979 0.5159 10 14 7.8252 2.7083 -0.3461 11 1 8.4451 3.4063 0.8087 12 1 8.8832 2.0456 -1.1502 13 1 7.1051 3.6940 -1.1919 14 6 2.6390 1.9048 2.2905 15 8 1.5096 2.3306 2.4336 16 6 3.6175 2.0190 3.3932 17 6 4.2243 0.8751 3.9113 18 6 5.1415 0.9904 4.9454 19 16 5.9124 -0.4504 5.6043 20 6 6.9947 0.2204 6.8963 21 6 5.4535 2.2439 5.4613 22 6 4.8526 3.3768 4.9466 23 6 3.9427 3.2728 3.9136 24 6 3.2953 4.5125 3.3523 25 1 -0.5400 -0.9318 -0.0816 26 1 -0.5401 0.9317 0.0815 27 1 1.8500 -0.9352 0.0004 28 1 1.3589 2.1314 0.0957 29 1 2.6164 1.4055 -0.9339 30 1 4.6609 0.3546 1.9574 31 1 4.2791 -0.1013 0.2797 32 1 7.9600 -0.0395 0.3690 33 1 3.9805 -0.0971 3.5091 34 1 7.5311 -0.5955 7.3808 35 1 7.7098 0.9107 6.4489 36 1 6.3932 0.7491 7.6357 37 1 6.1682 2.3320 6.2661 38 1 5.0984 4.3474 5.3514 39 1 2.4244 4.7718 3.9542 40 1 4.0091 5.3361 3.3724 41 1 2.9843 4.3263 2.3244 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292444897.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:36 Heat of formation + Delta-G solvation = 11.175306 kcal Electronic energy + Delta-G solvation = -23173.241338 eV Core-core repulsion = 19951.952132 eV Total energy + Delta-G solvation = -3221.289206 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.87646 -37.91046 -35.47589 -33.51727 -32.48447 -32.18992 -30.91773 -28.89408 -27.42237 -26.95365 -25.58995 -23.43802 -22.39013 -21.45280 -19.75244 -18.87659 -17.14709 -16.47770 -16.21696 -15.61066 -15.47842 -15.20684 -14.57585 -14.44706 -13.94554 -13.75921 -13.53056 -13.33998 -13.24954 -13.05088 -12.68234 -12.40794 -12.35751 -11.94539 -11.89598 -11.55566 -11.29332 -11.21646 -11.05951 -10.97295 -10.81163 -10.67254 -10.15191 -9.98399 -9.72935 -9.37808 -9.12461 -8.96113 -8.59761 -8.36913 -7.73887 -7.02785 -6.13078 -4.18747 1.44367 1.65480 1.76147 2.57334 2.64017 3.24118 3.28461 3.31401 3.35725 3.84419 4.21690 4.36595 5.04554 5.08099 5.10895 5.19289 5.20765 5.24492 5.34565 5.44781 5.57272 5.65655 5.66381 5.90096 5.95330 5.99624 6.05976 6.16690 6.23899 6.33148 6.41711 6.51835 6.58362 6.69532 6.90187 6.93334 7.12034 7.18536 7.21371 7.50575 7.79574 8.09683 8.26961 8.79497 8.94117 9.47160 10.93873 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.009160 B = 0.006891 C = 0.005326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3055.969412 B = 4062.118362 C = 5256.440220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.157 4.157 3 C 0.143 3.857 4 N -0.584 5.584 5 C 0.225 3.775 6 C -0.532 4.532 7 H 0.058 0.942 8 C 0.068 3.932 9 N -0.886 5.886 10 Si 0.891 3.109 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.562 3.438 15 O -0.562 6.562 16 C -0.078 4.078 17 C -0.046 4.046 18 C -0.091 4.091 19 S -0.115 6.115 20 C -0.145 4.145 21 C -0.119 4.119 22 C -0.111 4.111 23 C -0.043 4.043 24 C -0.110 4.110 25 H 0.092 0.908 26 H 0.096 0.904 27 H 0.108 0.892 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.051 0.949 31 H 0.036 0.964 32 H 0.264 0.736 33 H 0.131 0.869 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.120 0.880 38 H 0.125 0.875 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.082 1.642 8.392 9.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.176 4.176 3 C 0.020 3.980 4 N -0.313 5.313 5 C 0.106 3.894 6 C -0.571 4.571 7 H 0.077 0.923 8 C -0.135 4.135 9 N -0.524 5.524 10 Si 0.719 3.281 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.198 1.198 14 C 0.350 3.650 15 O -0.443 6.443 16 C -0.082 4.082 17 C -0.070 4.070 18 C -0.204 4.204 19 S 0.126 5.874 20 C -0.314 4.314 21 C -0.143 4.143 22 C -0.130 4.130 23 C -0.046 4.046 24 C -0.166 4.166 25 H 0.110 0.890 26 H 0.114 0.886 27 H 0.126 0.874 28 H 0.097 0.903 29 H 0.106 0.894 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.149 0.851 34 H 0.122 0.878 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.138 0.862 38 H 0.143 0.857 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.518 0.502 8.196 8.933 hybrid contribution 1.271 1.808 -0.134 2.214 sum -2.247 2.310 8.062 8.682 Atomic orbital electron populations 1.23751 0.95845 1.01460 1.01716 1.23399 0.96115 0.99386 0.98741 1.20492 0.92106 0.95048 0.90364 1.48211 1.17047 1.55408 1.10681 1.19761 0.76565 0.93966 0.99113 1.21381 0.93602 0.96934 1.45193 0.92328 1.24874 0.98038 0.95344 0.95233 1.69915 1.16816 1.17709 1.47942 0.86595 0.80903 0.81652 0.78949 1.20577 1.21092 1.19839 1.18202 0.86569 0.77526 0.82718 1.90686 1.20664 1.50825 1.82143 1.19553 0.98215 0.93414 0.97048 1.20688 0.94195 0.98283 0.93788 1.21406 1.01815 0.96147 1.00983 1.85496 1.50398 1.10077 1.41429 1.23627 1.01972 1.05614 1.00145 1.21076 1.00818 0.91619 1.00783 1.20690 0.97460 0.97950 0.96944 1.19753 0.95939 0.93926 0.95018 1.20759 0.99878 0.94278 1.01704 0.88953 0.88585 0.87392 0.90327 0.89365 0.93141 0.94555 0.92610 0.85095 0.87768 0.89831 0.90119 0.86172 0.85738 0.90996 0.91743 0.91298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.79 14.32 29.02 0.42 -2.38 16 2 C -0.16 -2.62 9.84 -36.02 -0.35 -2.98 16 3 C 0.14 2.67 5.87 -5.19 -0.03 2.64 16 4 N -0.58 -12.55 2.44 -177.54 -0.43 -12.98 16 5 C 0.23 5.41 4.93 -5.19 -0.03 5.38 16 6 C -0.53 -13.97 9.38 -34.44 -0.32 -14.29 16 7 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 8 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 9 N -0.89 -24.54 13.29 55.43 0.74 -23.81 16 10 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 14 C 0.56 12.19 5.91 -12.32 -0.07 12.12 16 15 O -0.56 -12.77 15.81 5.33 0.08 -12.69 16 16 C -0.08 -1.60 5.02 -104.99 -0.53 -2.12 16 17 C -0.05 -0.92 7.41 -38.95 -0.29 -1.20 16 18 C -0.09 -1.63 6.11 -39.09 -0.24 -1.87 16 19 S -0.12 -1.81 22.56 -107.50 -2.43 -4.23 16 20 C -0.14 -1.58 9.15 101.05 0.92 -0.66 16 21 C -0.12 -1.90 9.36 -39.29 -0.37 -2.27 16 22 C -0.11 -1.78 9.70 -39.67 -0.38 -2.16 16 23 C -0.04 -0.80 5.92 -104.19 -0.62 -1.42 16 24 C -0.11 -1.80 9.33 36.01 0.34 -1.47 16 25 H 0.09 1.17 8.06 -52.49 -0.42 0.74 16 26 H 0.10 1.39 7.84 -52.48 -0.41 0.98 16 27 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 28 H 0.08 1.45 7.00 -51.93 -0.36 1.09 16 29 H 0.09 1.62 8.11 -51.93 -0.42 1.20 16 30 H 0.05 1.26 4.17 -51.93 -0.22 1.04 16 31 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 32 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.13 2.65 7.06 -52.48 -0.37 2.28 16 34 H 0.10 0.93 8.14 -51.92 -0.42 0.50 16 35 H 0.08 0.91 7.74 -51.93 -0.40 0.50 16 36 H 0.08 0.77 7.74 -51.92 -0.40 0.36 16 37 H 0.12 1.54 5.86 -52.49 -0.31 1.24 16 38 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.06 0.91 8.12 -51.93 -0.42 0.48 16 41 H 0.07 1.28 6.68 -51.93 -0.35 0.93 16 LS Contribution 357.63 15.07 5.39 5.39 Total: -1.00 -29.80 357.63 -9.06 -38.86 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -5.74 Total: 4.56 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -1.65 Total: -10.95 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.30 Total: -36.79 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.08 Total: -12.69 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: -1.81 SS G_CDS: -2.43 Total: -4.23 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.80 -9.06 -38.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292444897.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.033 kcal (2) G-P(sol) polarization free energy of solvation -29.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds