Wall clock time and date at job start Tue Mar 31 2020 08:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 119.99606 * 2 1 4 4 N 1.46502 * 109.46869 * 125.34709 * 3 2 1 5 5 C 1.46498 * 120.00323 * 85.08515 * 4 3 2 6 6 C 1.50701 * 109.46794 * 89.99986 * 5 4 3 7 7 H 1.08004 * 119.99928 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00103 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99839 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00404 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47513 * 89.99379 * 10 8 6 12 12 H 1.48497 * 109.47178 * 209.99938 * 10 8 6 13 13 H 1.48505 * 109.46720 * 329.99627 * 10 8 6 14 14 C 1.34781 * 119.99465 * 265.08785 * 4 3 2 15 15 O 1.21544 * 120.00452 * 4.59002 * 14 4 3 16 16 C 1.47871 * 119.99583 * 184.59030 * 14 4 3 17 17 C 1.39467 * 120.10533 * 302.00051 * 16 14 4 18 18 C 1.38706 * 119.76752 * 179.97438 * 17 16 14 19 19 S 1.76195 * 120.01097 * 180.02562 * 18 17 16 20 20 C 1.81398 * 103.00121 * 179.97438 * 19 18 17 21 21 C 1.39091 * 119.97974 * 359.97438 * 18 17 16 22 22 C 1.38180 * 120.21211 * 359.97438 * 21 18 17 23 23 C 1.38049 * 120.23493 * 359.74871 * 22 21 18 24 24 C 1.50701 * 119.98880 * 180.27390 * 23 22 21 25 25 H 1.08001 * 119.99792 * 174.99413 * 1 2 3 26 26 H 1.08005 * 120.00517 * 355.00057 * 1 2 3 27 27 H 1.07993 * 120.00202 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47219 * 5.34602 * 3 2 1 29 29 H 1.08998 * 109.47036 * 245.34212 * 3 2 1 30 30 H 1.08996 * 109.47066 * 209.99644 * 5 4 3 31 31 H 1.08998 * 109.47200 * 330.00220 * 5 4 3 32 32 H 0.97000 * 119.99493 * 180.02562 * 9 8 6 33 33 H 1.08004 * 120.11924 * 359.95367 * 17 16 14 34 34 H 1.09006 * 109.47197 * 179.97438 * 20 19 18 35 35 H 1.08994 * 109.47258 * 299.99910 * 20 19 18 36 36 H 1.09000 * 109.46778 * 60.00071 * 20 19 18 37 37 H 1.07999 * 119.89051 * 180.02562 * 21 18 17 38 38 H 1.07999 * 119.88068 * 179.97438 * 22 21 18 39 39 H 1.08999 * 109.46802 * 274.98809 * 24 23 22 40 40 H 1.09000 * 109.47503 * 34.99467 * 24 23 22 41 41 H 1.09001 * 109.46729 * 154.99134 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9996 1.3286 1.1266 5 6 4.3275 0.7256 0.9883 6 6 5.2997 1.7616 0.4856 7 1 4.9621 2.7686 0.2892 8 6 6.6199 1.4240 0.2763 9 7 7.0311 0.1979 0.5159 10 14 7.8252 2.7083 -0.3461 11 1 8.4451 3.4063 0.8087 12 1 8.8832 2.0456 -1.1502 13 1 7.1051 3.6940 -1.1919 14 6 2.6390 1.9048 2.2905 15 8 1.5096 2.3306 2.4336 16 6 3.6175 2.0190 3.3932 17 6 4.2243 0.8751 3.9113 18 6 5.1415 0.9904 4.9454 19 16 5.9124 -0.4504 5.6043 20 6 6.9947 0.2204 6.8963 21 6 5.4535 2.2439 5.4613 22 6 4.8526 3.3768 4.9466 23 6 3.9427 3.2728 3.9136 24 6 3.2953 4.5125 3.3523 25 1 -0.5400 -0.9318 -0.0816 26 1 -0.5401 0.9317 0.0815 27 1 1.8500 -0.9352 0.0004 28 1 1.3589 2.1314 0.0957 29 1 2.6164 1.4055 -0.9339 30 1 4.6609 0.3546 1.9574 31 1 4.2791 -0.1013 0.2797 32 1 7.9600 -0.0395 0.3690 33 1 3.9805 -0.0971 3.5091 34 1 7.5311 -0.5955 7.3808 35 1 7.7098 0.9107 6.4489 36 1 6.3932 0.7491 7.6357 37 1 6.1682 2.3320 6.2661 38 1 5.0984 4.3474 5.3514 39 1 2.4244 4.7718 3.9542 40 1 4.0091 5.3361 3.3724 41 1 2.9843 4.3263 2.3244 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292444897.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:35 Heat of formation + Delta-G solvation = -3.435854 kcal Electronic energy + Delta-G solvation = -23173.874925 eV Core-core repulsion = 19951.952132 eV Total energy + Delta-G solvation = -3221.922793 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.43202 -39.37657 -37.15285 -35.19119 -34.00173 -33.81177 -32.27714 -29.81941 -29.33191 -28.31355 -27.06644 -25.24167 -23.95891 -22.82379 -21.12148 -20.37901 -18.78838 -18.35130 -17.78650 -17.09374 -16.89965 -16.68230 -16.29349 -15.93793 -15.27927 -15.03779 -14.87255 -14.68164 -14.42043 -14.39537 -14.23951 -14.09441 -13.54208 -13.40414 -13.29764 -13.09339 -13.03085 -12.75565 -12.54464 -12.51747 -12.35093 -12.25061 -12.01187 -11.68091 -11.14156 -10.97830 -10.59832 -10.42899 -10.32184 -9.89220 -9.47872 -8.28906 -8.17384 -6.30327 0.05529 0.28231 0.59837 1.26278 1.38707 1.39976 1.49380 1.54364 1.68398 2.30846 2.43668 2.74263 3.13412 3.58340 3.83483 3.92342 4.00369 4.10191 4.20112 4.30430 4.31086 4.40135 4.49448 4.59745 4.66915 4.75677 4.76712 4.83537 4.86333 4.91395 4.99807 5.09937 5.15659 5.23226 5.25903 5.52402 5.63450 5.64303 5.75014 5.84053 5.87787 6.07442 6.48775 6.79128 7.19417 7.39865 8.88474 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.009160 B = 0.006891 C = 0.005326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3055.969412 B = 4062.118362 C = 5256.440220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.184 4.184 3 C 0.140 3.860 4 N -0.588 5.588 5 C 0.242 3.758 6 C -0.539 4.539 7 H 0.049 0.951 8 C 0.026 3.974 9 N -0.914 5.914 10 Si 0.950 3.050 11 H -0.274 1.274 12 H -0.280 1.280 13 H -0.270 1.270 14 C 0.561 3.439 15 O -0.580 6.580 16 C -0.108 4.108 17 C -0.069 4.069 18 C -0.100 4.100 19 S -0.161 6.161 20 C -0.131 4.131 21 C -0.115 4.115 22 C -0.103 4.103 23 C -0.062 4.062 24 C -0.104 4.104 25 H 0.120 0.880 26 H 0.100 0.900 27 H 0.104 0.896 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.042 0.958 31 H 0.018 0.982 32 H 0.266 0.734 33 H 0.110 0.890 34 H 0.127 0.873 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.158 0.842 38 H 0.166 0.834 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.057 3.161 10.000 10.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.203 4.203 3 C 0.018 3.982 4 N -0.317 5.317 5 C 0.121 3.879 6 C -0.578 4.578 7 H 0.067 0.933 8 C -0.175 4.175 9 N -0.553 5.553 10 Si 0.775 3.225 11 H -0.200 1.200 12 H -0.205 1.205 13 H -0.195 1.195 14 C 0.349 3.651 15 O -0.462 6.462 16 C -0.113 4.113 17 C -0.093 4.093 18 C -0.212 4.212 19 S 0.080 5.920 20 C -0.299 4.299 21 C -0.138 4.138 22 C -0.123 4.123 23 C -0.065 4.065 24 C -0.161 4.161 25 H 0.138 0.862 26 H 0.118 0.882 27 H 0.122 0.878 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.059 0.941 31 H 0.036 0.964 32 H 0.075 0.925 33 H 0.128 0.872 34 H 0.146 0.854 35 H 0.108 0.892 36 H 0.120 0.880 37 H 0.176 0.824 38 H 0.184 0.816 39 H 0.102 0.898 40 H 0.110 0.890 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.508 2.018 9.795 10.310 hybrid contribution 0.915 1.301 -0.563 1.688 sum -1.593 3.319 9.232 9.939 Atomic orbital electron populations 1.23992 0.94995 1.02909 0.98112 1.23236 0.96875 0.98134 1.02060 1.20600 0.91796 0.96400 0.89355 1.48210 1.16603 1.55282 1.11576 1.19380 0.77563 0.93043 0.97872 1.21522 0.94327 0.96764 1.45161 0.93300 1.25568 0.99517 0.97067 0.95362 1.70020 1.17203 1.19231 1.48796 0.85677 0.78832 0.79422 0.78548 1.20008 1.20538 1.19474 1.18487 0.86721 0.76877 0.82976 1.90641 1.21367 1.51668 1.82533 1.19658 0.99211 0.94818 0.97593 1.20611 0.95896 0.97340 0.95442 1.21629 1.01232 0.97839 1.00486 1.85651 1.51766 1.10782 1.43777 1.23768 1.01074 1.06609 0.98426 1.21560 1.00685 0.90568 1.00998 1.21163 0.95714 0.99872 0.95520 1.20131 0.96854 0.93565 0.95974 1.20751 1.00981 0.94408 0.99953 0.86210 0.88184 0.87763 0.90282 0.89796 0.94062 0.96412 0.92495 0.87188 0.85426 0.89208 0.87999 0.82430 0.81626 0.89770 0.89012 0.94230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.64 14.32 67.78 0.97 -3.67 16 2 C -0.18 -6.30 9.84 25.65 0.25 -6.05 16 3 C 0.14 5.49 5.87 85.63 0.50 5.99 16 4 N -0.59 -26.54 2.44 -833.90 -2.03 -28.58 16 5 C 0.24 12.22 4.93 85.63 0.42 12.64 16 6 C -0.54 -29.05 9.38 25.60 0.24 -28.81 16 7 H 0.05 2.68 7.81 -2.91 -0.02 2.65 16 8 C 0.03 1.38 5.46 84.65 0.46 1.84 16 9 N -0.91 -51.49 13.29 21.45 0.28 -51.20 16 10 Si 0.95 42.67 29.54 68.60 2.03 44.69 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 12 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 13 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 14 C 0.56 25.35 5.91 86.79 0.51 25.87 16 15 O -0.58 -27.19 15.81 -3.85 -0.06 -27.25 16 16 C -0.11 -4.59 5.02 -20.11 -0.10 -4.69 16 17 C -0.07 -2.87 7.41 22.68 0.17 -2.70 16 18 C -0.10 -3.54 6.11 22.59 0.14 -3.40 16 19 S -0.16 -4.96 22.56 -56.49 -1.27 -6.23 16 20 C -0.13 -2.42 9.15 113.37 1.04 -1.38 16 21 C -0.11 -3.36 9.36 22.46 0.21 -3.15 16 22 C -0.10 -3.03 9.70 22.21 0.22 -2.81 16 23 C -0.06 -2.25 5.92 -19.58 -0.12 -2.36 16 24 C -0.10 -3.34 9.33 71.24 0.66 -2.67 16 25 H 0.12 2.77 8.06 -2.91 -0.02 2.75 16 26 H 0.10 2.80 7.84 -2.91 -0.02 2.77 16 27 H 0.10 3.62 8.06 -2.91 -0.02 3.59 16 28 H 0.08 3.03 7.00 -2.39 -0.02 3.01 16 29 H 0.08 3.25 8.11 -2.39 -0.02 3.23 16 30 H 0.04 2.19 4.17 -2.39 -0.01 2.18 16 31 H 0.02 0.95 8.07 -2.39 -0.02 0.93 16 32 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 33 H 0.11 4.85 7.06 -2.91 -0.02 4.83 16 34 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.09 1.60 7.74 -2.39 -0.02 1.58 16 36 H 0.10 1.50 7.74 -2.39 -0.02 1.48 16 37 H 0.16 3.34 5.86 -2.91 -0.02 3.32 16 38 H 0.17 3.42 8.06 -2.91 -0.02 3.39 16 39 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 40 H 0.09 2.36 8.12 -2.39 -0.02 2.34 16 41 H 0.04 1.48 6.68 -2.39 -0.02 1.46 16 Total: -1.00 -66.34 357.63 5.54 -60.80 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: 1.02 Total: 23.12 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: 5.58 Total: -15.35 kcal Atomic # 7 Polarization: -78.03 SS G_CDS: -1.75 Total: -79.78 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -0.06 Total: -27.25 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Atomic # 16 Polarization: -4.96 SS G_CDS: -1.27 Total: -6.23 kcal Total: -66.34 5.54 -60.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292444897.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.362 kcal (2) G-P(sol) polarization free energy of solvation -66.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds