Wall clock time and date at job start Tue Mar 31 2020 08:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.46908 * 2 1 4 4 C 1.50704 * 120.00194 * 275.00024 * 3 2 1 5 5 C 1.33017 * 120.00028 * 95.00284 * 3 2 1 6 6 C 1.47066 * 119.99735 * 172.76327 * 5 3 2 7 7 O 1.21627 * 120.00635 * 353.73045 * 6 5 3 8 8 N 1.34781 * 119.99627 * 173.72797 * 6 5 3 9 9 C 1.40046 * 119.99993 * 183.91078 * 8 6 5 10 10 C 1.38664 * 120.10316 * 328.66509 * 9 8 6 11 11 C 1.38251 * 120.00698 * 180.02562 * 10 9 8 12 12 C 1.38303 * 120.21270 * 359.97438 * 11 10 9 13 13 C 1.38209 * 120.20049 * 0.02562 * 12 11 10 14 14 C 1.38772 * 119.99370 * 0.02562 * 13 12 11 15 15 S 1.76205 * 120.10589 * 179.97438 * 14 13 12 16 16 C 1.81394 * 102.99790 * 359.97438 * 15 14 13 17 17 C 1.50701 * 109.47244 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99788 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00354 * 180.02562 * 17 16 15 20 20 N 1.31519 * 120.00012 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00106 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47355 * 59.99589 * 21 19 17 23 23 H 1.48503 * 109.47385 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.46756 * 299.99632 * 21 19 17 25 25 H 1.08997 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46947 * 299.99626 * 1 2 3 27 27 H 1.08998 * 109.47003 * 59.99746 * 1 2 3 28 28 H 1.09000 * 109.46947 * 240.00374 * 2 1 3 29 29 H 1.08991 * 109.47410 * 120.00270 * 2 1 3 30 30 H 1.08998 * 109.47094 * 264.99801 * 4 3 2 31 31 H 1.09004 * 109.47025 * 24.99579 * 4 3 2 32 32 H 1.08997 * 109.46951 * 144.99295 * 4 3 2 33 33 H 1.07992 * 119.99489 * 352.76991 * 5 3 2 34 34 H 0.97006 * 119.99946 * 3.90982 * 8 6 5 35 35 H 1.08000 * 119.99759 * 0.02562 * 10 9 8 36 36 H 1.07994 * 119.89462 * 180.02562 * 11 10 9 37 37 H 1.07997 * 119.89962 * 180.27528 * 12 11 10 38 38 H 1.08005 * 119.99610 * 180.02562 * 13 12 11 39 39 H 1.08996 * 109.47332 * 300.00467 * 16 15 14 40 40 H 1.09001 * 109.47100 * 60.00744 * 16 15 14 41 41 H 0.97000 * 119.99948 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.1762 2.1692 -1.3001 5 6 2.3487 2.0144 1.1476 6 6 2.9871 3.3393 1.1386 7 8 3.3295 3.8423 0.0855 8 7 3.1926 3.9961 2.2974 9 6 3.7251 5.2913 2.2832 10 6 4.6103 5.6685 1.2848 11 6 5.1351 6.9475 1.2731 12 6 4.7798 7.8546 2.2547 13 6 3.8982 7.4879 3.2540 14 6 3.3671 6.2060 3.2745 15 16 2.2434 5.7351 4.5475 16 6 2.1122 7.2393 5.5527 17 6 1.1701 6.9940 6.7032 18 1 0.6980 6.0295 6.8183 19 6 0.9110 8.0009 7.6088 20 7 1.4864 9.1752 7.4689 21 14 -0.2562 7.6966 9.0351 22 1 0.2643 6.5861 9.8724 23 1 -0.3638 8.9280 9.8581 24 1 -1.5966 7.3335 8.5090 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.2020 2.0816 -1.6582 31 1 1.4959 1.7468 -2.0397 32 1 1.9348 3.2204 -1.1429 33 1 2.1369 1.5233 2.0858 34 1 2.9717 3.5717 3.1413 35 1 4.8898 4.9631 0.5163 36 1 5.8241 7.2394 0.4944 37 1 5.1894 8.8537 2.2382 38 1 3.6227 8.1990 4.0187 39 1 3.0960 7.5048 5.9395 40 1 1.7310 8.0549 4.9382 41 1 1.3043 9.8834 8.1062 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294689077.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:42:01 Heat of formation + Delta-G solvation = -10.419445 kcal Electronic energy + Delta-G solvation = -21575.660999 eV Core-core repulsion = 18353.435375 eV Total energy + Delta-G solvation = -3222.225624 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.42210 -38.35870 -36.36782 -34.58059 -33.27535 -31.27448 -30.71351 -29.60899 -28.60694 -27.56821 -24.50127 -23.50279 -22.71268 -22.24092 -20.54053 -18.92642 -17.55870 -17.07405 -16.55026 -16.24786 -15.25253 -15.18252 -14.90226 -14.79195 -14.35943 -14.24128 -13.70233 -13.46831 -13.17548 -12.99360 -12.88525 -12.80196 -12.40001 -12.36868 -12.19832 -11.86185 -11.74834 -11.57869 -11.22165 -11.11638 -10.94436 -10.79001 -10.29514 -10.01941 -9.73023 -9.44580 -9.29174 -9.18842 -9.13937 -8.65342 -7.97306 -6.59098 -6.29237 -4.35310 1.12278 1.64914 1.77322 2.39519 3.17166 3.22123 3.26040 3.29190 3.31125 3.61006 4.12295 4.27087 4.45444 4.58802 4.94069 4.98441 5.02317 5.08223 5.28438 5.32196 5.36439 5.42958 5.57747 5.60779 5.62551 5.68400 5.81216 5.85263 5.90597 5.97747 6.23496 6.34135 6.38736 6.54782 6.59396 6.76357 6.88010 6.93004 6.96316 7.31599 7.57225 7.63043 7.86525 8.23056 8.65326 9.28765 10.81896 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.013755 B = 0.003536 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.161246 B = 7917.584720 C = 9758.408959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.097 4.097 3 C -0.026 4.026 4 C -0.126 4.126 5 C -0.230 4.230 6 C 0.546 3.454 7 O -0.528 6.528 8 N -0.658 5.658 9 C 0.148 3.852 10 C -0.112 4.112 11 C -0.125 4.125 12 C -0.117 4.117 13 C -0.117 4.117 14 C -0.094 4.094 15 S -0.168 6.168 16 C 0.077 3.923 17 C -0.520 4.520 18 H 0.068 0.932 19 C 0.069 3.931 20 N -0.889 5.889 21 Si 0.909 3.091 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.273 1.273 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.054 0.946 32 H 0.091 0.909 33 H 0.129 0.871 34 H 0.413 0.587 35 H 0.142 0.858 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.135 0.865 39 H 0.044 0.956 40 H 0.044 0.956 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.161 -13.781 -13.967 19.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.134 4.134 3 C -0.027 4.027 4 C -0.182 4.182 5 C -0.251 4.251 6 C 0.338 3.662 7 O -0.407 6.407 8 N -0.301 5.301 9 C 0.048 3.952 10 C -0.134 4.134 11 C -0.147 4.147 12 C -0.137 4.137 13 C -0.142 4.142 14 C -0.210 4.210 15 S 0.078 5.922 16 C -0.070 4.070 17 C -0.560 4.560 18 H 0.086 0.914 19 C -0.136 4.136 20 N -0.526 5.526 21 Si 0.735 3.265 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.198 1.198 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.109 0.891 33 H 0.147 0.853 34 H 0.250 0.750 35 H 0.159 0.841 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.152 0.848 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.730 -14.348 -14.319 20.454 hybrid contribution -0.077 1.055 1.193 1.594 sum 2.653 -13.292 -13.127 18.869 Atomic orbital electron populations 1.21737 0.94119 1.02079 1.02673 1.20773 0.96785 0.92513 1.03345 1.22552 0.90055 0.94763 0.95375 1.21168 1.02199 1.01504 0.93291 1.22313 1.07536 0.96013 0.99255 1.18618 0.78903 0.85607 0.83084 1.90711 1.50839 1.68668 1.30523 1.43400 1.62466 1.14368 1.09888 1.17207 0.96768 0.84235 0.97014 1.21202 0.95885 0.97537 0.98763 1.20949 1.01042 0.93570 0.99106 1.21033 0.98394 0.99486 0.94832 1.21226 0.98141 0.94888 0.99905 1.21879 1.02499 0.96086 1.00513 1.85056 1.52401 1.29126 1.25637 1.21355 1.01193 0.88948 0.95485 1.20571 1.27169 0.99355 1.08888 0.91415 1.24949 0.96111 0.94611 0.97936 1.69935 1.42634 1.03097 1.36962 0.86380 0.80976 0.77776 0.81353 1.19829 1.20948 1.19828 0.92113 0.92133 0.92314 0.90340 0.90584 0.90294 0.92691 0.89067 0.85327 0.74995 0.84055 0.86213 0.86166 0.84770 0.93754 0.93742 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.90 37.16 0.37 -0.65 16 2 C -0.10 -0.69 6.08 -27.88 -0.17 -0.86 16 3 C -0.03 -0.25 5.36 -101.16 -0.54 -0.80 16 4 C -0.13 -1.31 8.49 36.01 0.31 -1.00 16 5 C -0.23 -2.58 9.60 -37.82 -0.36 -2.95 16 6 C 0.55 7.91 7.47 -12.68 -0.09 7.82 16 7 O -0.53 -8.58 10.52 5.25 0.06 -8.52 16 8 N -0.66 -10.10 5.07 -10.79 -0.05 -10.16 16 9 C 0.15 2.61 6.37 -83.46 -0.53 2.08 16 10 C -0.11 -1.85 8.72 -39.42 -0.34 -2.19 16 11 C -0.12 -1.88 10.04 -39.55 -0.40 -2.28 16 12 C -0.12 -1.86 10.04 -39.57 -0.40 -2.26 16 13 C -0.12 -2.19 9.36 -39.39 -0.37 -2.56 16 14 C -0.09 -1.83 6.12 -38.90 -0.24 -2.07 16 15 S -0.17 -3.55 20.66 -107.50 -2.22 -5.77 16 16 C 0.08 1.93 4.09 36.01 0.15 2.08 16 17 C -0.52 -14.13 9.13 -34.44 -0.31 -14.45 16 18 H 0.07 1.81 7.71 -52.49 -0.40 1.41 16 19 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 20 N -0.89 -25.12 13.29 55.43 0.74 -24.39 16 21 Si 0.91 20.74 29.54 -169.99 -5.02 15.72 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.49 8.03 -51.93 -0.42 0.07 16 30 H 0.08 0.84 8.05 -51.93 -0.42 0.42 16 31 H 0.05 0.46 8.09 -51.93 -0.42 0.04 16 32 H 0.09 1.18 6.11 -51.93 -0.32 0.86 16 33 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.41 5.82 7.83 -40.82 -0.32 5.50 16 35 H 0.14 2.28 5.95 -52.49 -0.31 1.97 16 36 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 37 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.13 2.66 5.88 -52.48 -0.31 2.36 16 39 H 0.04 1.16 7.75 -51.93 -0.40 0.75 16 40 H 0.04 1.17 7.75 -51.92 -0.40 0.77 16 41 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 354.83 15.07 5.35 5.35 Total: -1.00 -29.62 354.83 -10.01 -39.63 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -5.82 Total: 6.45 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -3.04 Total: -18.32 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: 0.68 Total: -34.54 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.06 Total: -8.52 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -2.22 Total: -5.77 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.62 -10.01 -39.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294689077.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.214 kcal (2) G-P(sol) polarization free energy of solvation -29.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds