Wall clock time and date at job start Tue Mar 31 2020 08:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 120.00255 * 2 1 4 4 C 1.53001 * 109.47230 * 124.99810 * 3 2 1 5 5 H 1.09001 * 109.47129 * 55.00192 * 4 3 2 6 6 C 1.53000 * 109.47345 * 175.00230 * 4 3 2 7 7 C 1.52993 * 109.47279 * 184.99960 * 6 4 3 8 8 N 1.46505 * 109.47242 * 295.00157 * 4 3 2 9 9 C 1.34769 * 120.00119 * 155.27376 * 8 4 3 10 10 O 1.21556 * 120.00206 * 359.72625 * 9 8 4 11 11 C 1.47866 * 120.00203 * 179.72414 * 9 8 4 12 12 C 1.39675 * 120.09947 * 359.72849 * 11 9 8 13 13 C 1.38040 * 120.03906 * 179.74528 * 12 11 9 14 14 C 1.38179 * 120.24069 * 0.55064 * 13 12 11 15 15 C 1.39178 * 120.20285 * 359.69788 * 14 13 12 16 16 S 1.76203 * 120.02087 * 179.97438 * 15 14 13 17 17 C 1.76198 * 100.00051 * 265.53320 * 16 15 14 18 18 H 1.07994 * 120.00341 * 5.11460 * 17 16 15 19 19 C 1.38728 * 120.00108 * 185.12102 * 17 16 15 20 20 N 1.31624 * 120.00303 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00014 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47082 * 90.00017 * 21 19 17 23 23 H 1.48500 * 109.47354 * 210.00126 * 21 19 17 24 24 H 1.48503 * 109.46879 * 330.00212 * 21 19 17 25 25 C 1.38873 * 119.96087 * 0.02685 * 15 14 13 26 26 H 1.07997 * 119.99655 * 0.02562 * 1 2 3 27 27 H 1.07996 * 120.00044 * 179.97438 * 1 2 3 28 28 H 1.08004 * 120.00001 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.46659 * 5.00230 * 3 2 1 30 30 H 1.08996 * 109.47446 * 245.00096 * 3 2 1 31 31 H 1.09000 * 109.46702 * 305.00137 * 6 4 3 32 32 H 1.09005 * 109.47052 * 64.99658 * 6 4 3 33 33 H 1.09005 * 109.47326 * 59.99865 * 7 6 4 34 34 H 1.09005 * 109.47300 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.47398 * 299.99751 * 7 6 4 36 36 H 0.97001 * 119.99984 * 335.00051 * 8 4 3 37 37 H 1.08005 * 119.98038 * 359.97438 * 12 11 9 38 38 H 1.07995 * 119.87714 * 180.27316 * 13 12 11 39 39 H 1.07996 * 119.89800 * 179.72382 * 14 13 12 40 40 H 0.97001 * 119.99880 * 179.97438 * 20 19 17 41 41 H 1.08001 * 120.12302 * 180.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3331 1.1817 5 1 3.6827 0.4573 1.1404 6 6 3.8876 2.6016 1.1111 7 6 4.9420 2.5698 2.2193 8 7 2.2786 1.3223 2.4362 9 6 2.8492 0.8526 3.5632 10 8 3.9899 0.4333 3.5377 11 6 2.0878 0.8474 4.8307 12 6 0.7790 1.3341 4.8637 13 6 0.0675 1.3238 6.0465 14 6 0.6490 0.8435 7.2043 15 6 1.9543 0.3610 7.1841 16 16 2.6915 -0.2497 8.6634 17 6 3.5248 1.2026 9.2122 18 1 3.3945 2.1334 8.6805 19 6 4.3485 1.1502 10.3272 20 7 4.9714 2.2349 10.7369 21 14 4.5736 -0.4598 11.2474 22 1 5.7231 -1.2026 10.6712 23 1 4.8352 -0.1779 12.6817 24 1 3.3414 -1.2788 11.1206 25 6 2.6759 0.3621 5.9975 26 1 -0.5399 0.9353 -0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3586 2.1316 0.0896 30 1 2.6214 1.4026 -0.9313 31 1 4.3817 2.6537 0.1409 32 1 3.2497 3.4758 1.2414 33 1 5.5799 1.6955 2.0889 34 1 5.5497 3.4733 2.1687 35 1 4.4479 2.5176 3.1895 36 1 1.3684 1.6569 2.4566 37 1 0.3220 1.7152 3.9623 38 1 -0.9459 1.6966 6.0680 39 1 0.0888 0.8421 8.1276 40 1 5.5470 2.1983 11.5168 41 1 3.6888 -0.0120 5.9788 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337095283.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:52:55 Heat of formation + Delta-G solvation = -7.421793 kcal Electronic energy + Delta-G solvation = -22010.197655 eV Core-core repulsion = 18788.102019 eV Total energy + Delta-G solvation = -3222.095636 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.25318 -38.24000 -36.73646 -33.98776 -32.70750 -32.49445 -30.70316 -30.50014 -28.82353 -25.67563 -24.35408 -23.50843 -22.39367 -21.01969 -20.53626 -19.94491 -18.32992 -17.28691 -16.68001 -15.84172 -15.51142 -15.31284 -15.03143 -14.81866 -14.54357 -13.99359 -13.85907 -13.52631 -13.44065 -13.22443 -12.90717 -12.69871 -12.44537 -12.18533 -11.94256 -11.56905 -11.38045 -11.28235 -11.16788 -11.09420 -11.02068 -10.86677 -10.61565 -9.92630 -9.77885 -9.61998 -9.20517 -9.07796 -9.02119 -8.62682 -8.15022 -7.12893 -6.32453 -4.07887 1.12915 1.60413 1.98812 2.86596 3.07678 3.16710 3.27720 3.39018 3.51184 4.08926 4.26770 4.37650 4.64120 4.78734 4.87988 4.90603 5.01374 5.04969 5.06926 5.10417 5.19172 5.20424 5.39765 5.44784 5.61536 5.64362 5.72091 5.80212 5.85630 5.94023 5.98501 6.13606 6.19628 6.32403 6.39698 6.48022 6.52828 6.54790 6.58636 6.84236 7.12361 7.53414 7.91706 8.33706 8.45078 9.11477 10.76991 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.020206 B = 0.003467 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.397557 B = 8073.646127 C = 8799.963017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.149 4.149 3 C -0.102 4.102 4 C 0.149 3.851 5 H 0.091 0.909 6 C -0.133 4.133 7 C -0.148 4.148 8 N -0.723 5.723 9 C 0.564 3.436 10 O -0.529 6.529 11 C -0.152 4.152 12 C -0.086 4.086 13 C -0.140 4.140 14 C -0.052 4.052 15 C -0.085 4.085 16 S -0.113 6.113 17 C -0.509 4.509 18 H 0.091 0.909 19 C 0.095 3.905 20 N -0.876 5.876 21 Si 0.857 3.143 22 H -0.265 1.265 23 H -0.273 1.273 24 H -0.239 1.239 25 C -0.017 4.017 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.109 0.891 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.045 0.955 35 H 0.060 0.940 36 H 0.397 0.603 37 H 0.118 0.882 38 H 0.125 0.875 39 H 0.132 0.868 40 H 0.272 0.728 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.822 -0.978 -20.697 22.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.167 4.167 3 C -0.140 4.140 4 C 0.044 3.956 5 H 0.109 0.891 6 C -0.172 4.172 7 C -0.205 4.205 8 N -0.376 5.376 9 C 0.353 3.647 10 O -0.406 6.406 11 C -0.157 4.157 12 C -0.105 4.105 13 C -0.160 4.160 14 C -0.073 4.073 15 C -0.196 4.196 16 S 0.121 5.879 17 C -0.656 4.656 18 H 0.109 0.891 19 C -0.114 4.114 20 N -0.512 5.512 21 Si 0.682 3.318 22 H -0.190 1.190 23 H -0.198 1.198 24 H -0.163 1.163 25 C -0.039 4.039 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.127 0.873 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.232 0.768 37 H 0.136 0.864 38 H 0.143 0.857 39 H 0.150 0.850 40 H 0.082 0.918 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.867 -2.255 -20.057 22.045 hybrid contribution -0.183 0.946 -0.045 0.964 sum -9.051 -1.309 -20.102 22.084 Atomic orbital electron populations 1.23835 0.95868 1.01858 1.01627 1.22923 0.96072 0.98362 0.99385 1.21091 0.98522 0.95965 0.98395 1.20990 0.92732 0.99406 0.82441 0.89132 1.21975 0.98005 0.97380 0.99824 1.21822 0.98481 1.01193 0.99024 1.45914 1.17637 1.65603 1.08446 1.18284 0.86147 0.76877 0.83402 1.90782 1.17648 1.46447 1.85703 1.19880 0.95333 1.06650 0.93872 1.21171 0.93311 0.98048 0.97942 1.21040 1.00098 1.02142 0.92686 1.21888 0.94302 0.93025 0.98119 1.22189 0.96414 1.02370 0.98626 1.83066 1.64183 1.21428 1.19231 1.22241 1.32200 0.94174 1.16944 0.89111 1.24741 0.93682 0.96899 0.96049 1.69927 1.28425 1.27875 1.24988 0.86736 0.81185 0.83972 0.79888 1.19023 1.19804 1.16333 1.21889 0.99615 0.92454 0.89905 0.88648 0.88518 0.87314 0.90919 0.89357 0.91301 0.91965 0.92097 0.93603 0.92076 0.76803 0.86434 0.85698 0.84966 0.91815 0.84212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.36 14.32 29.01 0.42 -0.95 16 2 C -0.15 -1.13 9.25 -36.02 -0.33 -1.47 16 3 C -0.10 -0.70 5.20 -27.88 -0.15 -0.84 16 4 C 0.15 1.44 2.25 -67.93 -0.15 1.28 16 5 H 0.09 1.04 7.58 -51.93 -0.39 0.65 16 6 C -0.13 -1.29 5.61 -26.73 -0.15 -1.44 16 7 C -0.15 -1.93 8.51 37.15 0.32 -1.61 16 8 N -0.72 -8.00 4.70 -54.74 -0.26 -8.26 16 9 C 0.56 8.72 6.33 -12.32 -0.08 8.64 16 10 O -0.53 -9.85 13.46 5.32 0.07 -9.77 16 11 C -0.15 -2.51 5.87 -104.99 -0.62 -3.12 16 12 C -0.09 -1.15 9.54 -39.12 -0.37 -1.52 16 13 C -0.14 -1.96 10.02 -39.68 -0.40 -2.35 16 14 C -0.05 -0.92 9.79 -39.25 -0.38 -1.30 16 15 C -0.09 -1.78 5.45 -39.00 -0.21 -1.99 16 16 S -0.11 -2.75 19.38 -107.50 -2.08 -4.83 16 17 C -0.51 -14.66 10.01 30.91 0.31 -14.35 16 18 H 0.09 2.84 8.02 -52.49 -0.42 2.42 16 19 C 0.10 2.75 5.50 -17.46 -0.10 2.66 16 20 N -0.88 -26.40 13.97 55.49 0.78 -25.62 16 21 Si 0.86 21.11 27.74 -169.99 -4.71 16.39 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 23 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.24 -5.69 6.74 56.52 0.38 -5.31 16 25 C -0.02 -0.34 9.34 -38.92 -0.36 -0.70 16 26 H 0.10 0.57 7.84 -52.49 -0.41 0.16 16 27 H 0.10 0.64 8.06 -52.49 -0.42 0.22 16 28 H 0.11 0.87 8.06 -52.48 -0.42 0.45 16 29 H 0.07 0.43 7.79 -51.93 -0.40 0.03 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.85 7.84 -51.93 -0.41 0.45 16 34 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.96 5.63 -51.93 -0.29 0.67 16 36 H 0.40 3.49 6.63 -40.82 -0.27 3.22 16 37 H 0.12 1.11 6.40 -52.48 -0.34 0.78 16 38 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 39 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16 40 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.14 3.01 7.65 -52.49 -0.40 2.61 16 LS Contribution 355.66 15.07 5.36 5.36 Total: -1.00 -32.30 355.66 -8.99 -41.28 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -5.88 Total: 4.52 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -2.26 Total: -19.06 kcal Atomic # 7 Polarization: -34.40 SS G_CDS: 0.52 Total: -33.88 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.07 Total: -9.77 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.71 Total: 16.39 kcal Atomic # 16 Polarization: -2.75 SS G_CDS: -2.08 Total: -4.83 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.30 -8.99 -41.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337095283.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.862 kcal (2) G-P(sol) polarization free energy of solvation -32.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds