Wall clock time and date at job start Tue Mar 31 2020 08:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 120.00255 * 2 1 4 4 C 1.53001 * 109.47230 * 124.99810 * 3 2 1 5 5 H 1.09001 * 109.47129 * 55.00192 * 4 3 2 6 6 C 1.53000 * 109.47345 * 175.00230 * 4 3 2 7 7 C 1.52993 * 109.47279 * 184.99960 * 6 4 3 8 8 N 1.46505 * 109.47242 * 295.00157 * 4 3 2 9 9 C 1.34769 * 120.00119 * 155.27376 * 8 4 3 10 10 O 1.21556 * 120.00206 * 359.72625 * 9 8 4 11 11 C 1.47866 * 120.00203 * 179.72414 * 9 8 4 12 12 C 1.39675 * 120.09947 * 359.72849 * 11 9 8 13 13 C 1.38040 * 120.03906 * 179.74528 * 12 11 9 14 14 C 1.38179 * 120.24069 * 0.55064 * 13 12 11 15 15 C 1.39178 * 120.20285 * 359.69788 * 14 13 12 16 16 S 1.76203 * 120.02087 * 179.97438 * 15 14 13 17 17 C 1.76198 * 100.00051 * 265.53320 * 16 15 14 18 18 H 1.07994 * 120.00341 * 5.11460 * 17 16 15 19 19 C 1.38728 * 120.00108 * 185.12102 * 17 16 15 20 20 N 1.31624 * 120.00303 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00014 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47082 * 90.00017 * 21 19 17 23 23 H 1.48500 * 109.47354 * 210.00126 * 21 19 17 24 24 H 1.48503 * 109.46879 * 330.00212 * 21 19 17 25 25 C 1.38873 * 119.96087 * 0.02685 * 15 14 13 26 26 H 1.07997 * 119.99655 * 0.02562 * 1 2 3 27 27 H 1.07996 * 120.00044 * 179.97438 * 1 2 3 28 28 H 1.08004 * 120.00001 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.46659 * 5.00230 * 3 2 1 30 30 H 1.08996 * 109.47446 * 245.00096 * 3 2 1 31 31 H 1.09000 * 109.46702 * 305.00137 * 6 4 3 32 32 H 1.09005 * 109.47052 * 64.99658 * 6 4 3 33 33 H 1.09005 * 109.47326 * 59.99865 * 7 6 4 34 34 H 1.09005 * 109.47300 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.47398 * 299.99751 * 7 6 4 36 36 H 0.97001 * 119.99984 * 335.00051 * 8 4 3 37 37 H 1.08005 * 119.98038 * 359.97438 * 12 11 9 38 38 H 1.07995 * 119.87714 * 180.27316 * 13 12 11 39 39 H 1.07996 * 119.89800 * 179.72382 * 14 13 12 40 40 H 0.97001 * 119.99880 * 179.97438 * 20 19 17 41 41 H 1.08001 * 120.12302 * 180.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3331 1.1817 5 1 3.6827 0.4573 1.1404 6 6 3.8876 2.6016 1.1111 7 6 4.9420 2.5698 2.2193 8 7 2.2786 1.3223 2.4362 9 6 2.8492 0.8526 3.5632 10 8 3.9899 0.4333 3.5377 11 6 2.0878 0.8474 4.8307 12 6 0.7790 1.3341 4.8637 13 6 0.0675 1.3238 6.0465 14 6 0.6490 0.8435 7.2043 15 6 1.9543 0.3610 7.1841 16 16 2.6915 -0.2497 8.6634 17 6 3.5248 1.2026 9.2122 18 1 3.3945 2.1334 8.6805 19 6 4.3485 1.1502 10.3272 20 7 4.9714 2.2349 10.7369 21 14 4.5736 -0.4598 11.2474 22 1 5.7231 -1.2026 10.6712 23 1 4.8352 -0.1779 12.6817 24 1 3.3414 -1.2788 11.1206 25 6 2.6759 0.3621 5.9975 26 1 -0.5399 0.9353 -0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3586 2.1316 0.0896 30 1 2.6214 1.4026 -0.9313 31 1 4.3817 2.6537 0.1409 32 1 3.2497 3.4758 1.2414 33 1 5.5799 1.6955 2.0889 34 1 5.5497 3.4733 2.1687 35 1 4.4479 2.5176 3.1895 36 1 1.3684 1.6569 2.4566 37 1 0.3220 1.7152 3.9623 38 1 -0.9459 1.6966 6.0680 39 1 0.0888 0.8421 8.1276 40 1 5.5470 2.1983 11.5168 41 1 3.6888 -0.0120 5.9788 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337095283.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:52:55 Heat of formation + Delta-G solvation = -27.291473 kcal Electronic energy + Delta-G solvation = -22011.059269 eV Core-core repulsion = 18788.102019 eV Total energy + Delta-G solvation = -3222.957250 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.41501 -39.45478 -37.71146 -34.73215 -34.71650 -33.78618 -32.01247 -31.75311 -29.59873 -27.93429 -25.35929 -24.54514 -23.72556 -22.04030 -21.57642 -20.58846 -20.03133 -18.90627 -17.68493 -17.16344 -17.03435 -16.62770 -16.50859 -15.86888 -15.71694 -15.14869 -14.98570 -14.73540 -14.70720 -14.35033 -14.27484 -13.87382 -13.61240 -13.38639 -13.13638 -13.08309 -13.03421 -12.67714 -12.44953 -12.28604 -11.99254 -11.87174 -11.77362 -11.67821 -11.23819 -11.10991 -10.88774 -10.25987 -10.07468 -9.87794 -9.74420 -9.15648 -8.55174 -6.29363 -0.19065 0.20848 1.05423 1.30200 1.42788 1.45730 1.65425 1.82569 2.14889 2.20601 2.60562 2.83004 2.97138 3.65213 3.75595 3.91194 3.97566 4.03444 4.17002 4.28255 4.31744 4.37965 4.45548 4.53504 4.62195 4.66698 4.83552 4.89422 4.92809 5.02016 5.05536 5.12968 5.19651 5.24087 5.30116 5.42431 5.44642 5.54314 5.67456 5.81236 5.83648 5.92938 6.08571 6.54230 6.87259 7.23126 8.58539 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.020206 B = 0.003467 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.397557 B = 8073.646127 C = 8799.963017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.167 4.167 3 C -0.090 4.090 4 C 0.147 3.853 5 H 0.066 0.934 6 C -0.127 4.127 7 C -0.147 4.147 8 N -0.700 5.700 9 C 0.562 3.438 10 O -0.572 6.572 11 C -0.158 4.158 12 C -0.061 4.061 13 C -0.122 4.122 14 C -0.061 4.061 15 C -0.119 4.119 16 S -0.116 6.116 17 C -0.524 4.524 18 H 0.045 0.955 19 C 0.041 3.959 20 N -0.919 5.919 21 Si 0.922 3.078 22 H -0.263 1.263 23 H -0.256 1.256 24 H -0.226 1.226 25 C -0.044 4.044 26 H 0.113 0.887 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.039 0.961 34 H 0.052 0.948 35 H 0.028 0.972 36 H 0.412 0.588 37 H 0.173 0.827 38 H 0.177 0.823 39 H 0.139 0.861 40 H 0.278 0.722 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.116 -0.544 -23.163 26.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.185 4.185 3 C -0.127 4.127 4 C 0.043 3.957 5 H 0.084 0.916 6 C -0.165 4.165 7 C -0.205 4.205 8 N -0.353 5.353 9 C 0.350 3.650 10 O -0.452 6.452 11 C -0.163 4.163 12 C -0.079 4.079 13 C -0.141 4.141 14 C -0.082 4.082 15 C -0.230 4.230 16 S 0.118 5.882 17 C -0.671 4.671 18 H 0.063 0.937 19 C -0.164 4.164 20 N -0.557 5.557 21 Si 0.743 3.257 22 H -0.188 1.188 23 H -0.180 1.180 24 H -0.150 1.150 25 C -0.066 4.066 26 H 0.131 0.869 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.123 0.877 31 H 0.112 0.888 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.047 0.953 36 H 0.250 0.750 37 H 0.190 0.810 38 H 0.194 0.806 39 H 0.157 0.843 40 H 0.088 0.912 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -12.206 -1.803 -22.559 25.713 hybrid contribution 0.747 0.909 0.500 1.278 sum -11.459 -0.894 -22.059 24.874 Atomic orbital electron populations 1.24005 0.95595 1.02734 1.00146 1.22946 0.96501 0.98319 1.00765 1.21029 0.98158 0.96232 0.97279 1.21112 0.93313 0.98553 0.82724 0.91566 1.21961 0.97234 0.97808 0.99490 1.21785 0.99269 1.00584 0.98841 1.45755 1.18157 1.63716 1.07624 1.18248 0.85589 0.76997 0.84202 1.90769 1.19534 1.48593 1.86302 1.20052 0.96893 1.06285 0.93053 1.21746 0.91305 0.94939 0.99918 1.21561 1.01940 0.99630 0.90961 1.22073 0.92853 0.92966 1.00261 1.22072 0.98207 1.05987 0.96773 1.82603 1.64091 1.19580 1.21976 1.22369 1.33020 0.94800 1.16898 0.93700 1.25730 0.93151 1.00678 0.96851 1.70032 1.29443 1.30288 1.25945 0.85770 0.81583 0.79373 0.79022 1.18754 1.18041 1.14965 1.21631 0.98634 0.94722 0.91610 0.86871 0.88598 0.88722 0.88744 0.87719 0.88793 0.90289 0.94133 0.92877 0.95316 0.74961 0.81004 0.80570 0.84282 0.91243 0.87710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.93 14.32 67.78 0.97 -0.96 16 2 C -0.17 -2.07 9.25 25.65 0.24 -1.83 16 3 C -0.09 -0.89 5.20 29.85 0.16 -0.73 16 4 C 0.15 2.54 2.25 44.99 0.10 2.64 16 5 H 0.07 1.51 7.58 -2.39 -0.02 1.50 16 6 C -0.13 -2.15 5.61 30.59 0.17 -1.98 16 7 C -0.15 -3.89 8.51 71.98 0.61 -3.28 16 8 N -0.70 -13.85 4.70 -445.38 -2.09 -15.94 16 9 C 0.56 17.33 6.33 86.79 0.55 17.88 16 10 O -0.57 -22.58 13.46 -3.89 -0.05 -22.64 16 11 C -0.16 -5.11 5.87 -20.11 -0.12 -5.23 16 12 C -0.06 -1.38 9.54 22.57 0.22 -1.16 16 13 C -0.12 -2.89 10.02 22.21 0.22 -2.66 16 14 C -0.06 -2.06 9.79 22.48 0.22 -1.84 16 15 C -0.12 -5.16 5.45 22.65 0.12 -5.03 16 16 S -0.12 -5.90 19.38 -56.49 -1.09 -6.99 16 17 C -0.52 -31.94 10.01 67.94 0.68 -31.26 16 18 H 0.04 3.03 8.02 -2.91 -0.02 3.01 16 19 C 0.04 2.46 5.50 84.84 0.47 2.92 16 20 N -0.92 -57.73 13.97 21.64 0.30 -57.42 16 21 Si 0.92 44.63 27.74 68.60 1.90 46.53 16 22 H -0.26 -12.52 7.11 99.48 0.71 -11.82 16 23 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 24 H -0.23 -10.40 6.74 99.48 0.67 -9.73 16 25 C -0.04 -1.86 9.34 22.70 0.21 -1.65 16 26 H 0.11 0.76 7.84 -2.91 -0.02 0.74 16 27 H 0.10 0.99 8.06 -2.91 -0.02 0.97 16 28 H 0.09 1.42 8.06 -2.91 -0.02 1.40 16 29 H 0.09 0.58 7.79 -2.38 -0.02 0.57 16 30 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.04 1.20 7.84 -2.38 -0.02 1.18 16 34 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 35 H 0.03 0.93 5.63 -2.39 -0.01 0.91 16 36 H 0.41 5.34 6.63 -92.71 -0.61 4.72 16 37 H 0.17 2.05 6.40 -2.91 -0.02 2.03 16 38 H 0.18 2.51 8.06 -2.91 -0.02 2.48 16 39 H 0.14 4.43 8.06 -2.91 -0.02 4.41 16 40 H 0.28 16.01 8.31 -92.71 -0.77 15.24 16 41 H 0.10 5.02 7.65 -2.91 -0.02 5.00 16 Total: -1.00 -78.81 355.66 4.16 -74.65 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.37 Total: 15.98 kcal Atomic # 6 Polarization: -39.00 SS G_CDS: 4.82 Total: -34.18 kcal Atomic # 7 Polarization: -71.57 SS G_CDS: -1.79 Total: -73.36 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.05 Total: -22.64 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.90 Total: 46.53 kcal Atomic # 16 Polarization: -5.90 SS G_CDS: -1.09 Total: -6.99 kcal Total: -78.81 4.16 -74.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337095283.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.362 kcal (2) G-P(sol) polarization free energy of solvation -78.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds