Wall clock time and date at job start Tue Mar 31 2020 08:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47143 * 2 1 4 4 C 1.53001 * 109.47381 * 120.00192 * 2 1 3 5 5 H 1.09002 * 112.73794 * 49.25721 * 4 2 1 6 6 C 1.53496 * 113.46472 * 278.44346 * 4 2 1 7 7 C 1.53504 * 83.34189 * 219.15020 * 6 4 2 8 8 N 1.47062 * 87.98424 * 26.06872 * 7 6 4 9 9 C 1.34775 * 136.05942 * 152.84504 * 8 7 6 10 10 O 1.21551 * 120.00279 * 185.46319 * 9 8 7 11 11 C 1.47867 * 119.99822 * 5.46978 * 9 8 7 12 12 C 1.39671 * 120.09897 * 6.66312 * 11 9 8 13 13 C 1.38045 * 120.03568 * 179.71880 * 12 11 9 14 14 C 1.38176 * 120.24055 * 0.55956 * 13 12 11 15 15 C 1.39176 * 120.20642 * 359.71783 * 14 13 12 16 16 S 1.76203 * 120.02388 * 180.02562 * 15 14 13 17 17 C 1.76198 * 99.99799 * 274.89730 * 16 15 14 18 18 H 1.07996 * 120.00275 * 5.00232 * 17 16 15 19 19 C 1.38727 * 119.99813 * 185.01047 * 17 16 15 20 20 N 1.31631 * 120.00180 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00277 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46592 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47341 * 119.99574 * 21 19 17 24 24 H 1.48505 * 109.47181 * 239.99896 * 21 19 17 25 25 C 1.38879 * 119.95730 * 359.97438 * 15 14 13 26 26 H 1.08998 * 109.47362 * 59.99934 * 1 2 3 27 27 H 1.09002 * 109.47160 * 299.99756 * 1 2 3 28 28 H 1.08994 * 109.47232 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47160 * 240.00244 * 2 1 3 30 30 H 1.08999 * 109.47174 * 173.12117 * 3 2 1 31 31 H 1.08998 * 109.46982 * 293.12299 * 3 2 1 32 32 H 1.09000 * 109.47154 * 53.12057 * 3 2 1 33 33 H 1.09002 * 114.21000 * 332.73314 * 6 4 2 34 34 H 1.08995 * 114.20914 * 105.56505 * 6 4 2 35 35 H 1.08994 * 113.46498 * 271.28666 * 7 6 4 36 36 H 1.09002 * 113.51766 * 140.85789 * 7 6 4 37 37 H 1.08000 * 119.98284 * 0.02562 * 12 11 9 38 38 H 1.07997 * 119.87913 * 180.25567 * 13 12 11 39 39 H 1.08001 * 119.89929 * 179.69784 * 14 13 12 40 40 H 0.97003 * 119.99846 * 180.02562 * 20 19 17 41 41 H 1.08001 * 120.11751 * 179.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.5619 -1.6889 1.4018 6 6 2.0489 0.1623 2.5043 7 6 3.3724 -0.5621 2.7873 8 7 3.5071 -0.7724 1.3380 9 6 4.5265 -0.9381 0.4721 10 8 4.3065 -0.9959 -0.7219 11 6 5.9127 -1.0499 0.9747 12 6 6.1560 -1.1239 2.3481 13 6 7.4502 -1.2341 2.8156 14 6 8.5103 -1.2600 1.9297 15 6 8.2798 -1.1811 0.5594 16 16 9.6351 -1.2153 -0.5660 17 6 10.0751 0.4909 -0.5670 18 1 9.5744 1.1780 0.0990 19 6 11.0645 0.9516 -1.4233 20 7 11.6750 0.1140 -2.2348 21 14 11.5305 2.7605 -1.4250 22 1 10.7021 3.4859 -0.4285 23 1 12.9662 2.9022 -1.0730 24 1 11.2931 3.3317 -2.7751 25 6 6.9807 -1.0765 0.0796 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1230 1.4450 0.1231 31 1 1.7806 1.9196 -0.9451 32 1 1.5797 1.9907 0.8220 33 1 2.1573 1.2275 2.3003 34 1 1.2547 -0.0639 3.2157 35 1 3.2490 -1.4871 3.3505 36 1 4.1424 0.0863 3.2054 37 1 5.3308 -1.0999 3.0444 38 1 7.6351 -1.2953 3.8778 39 1 9.5209 -1.3414 2.3017 40 1 12.3670 0.4361 -2.8333 41 1 6.7989 -1.0147 -0.9832 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343198860.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:42:32 Heat of formation + Delta-G solvation = 23.550389 kcal Electronic energy + Delta-G solvation = -22276.670209 eV Core-core repulsion = 19055.917628 eV Total energy + Delta-G solvation = -3220.752582 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.98620 -38.72789 -37.29169 -34.68850 -32.50106 -31.25320 -30.54800 -29.28592 -27.35807 -26.09072 -25.55335 -23.92122 -22.27292 -21.97447 -20.64491 -18.88348 -17.87442 -17.06079 -16.47032 -16.29505 -15.63761 -14.95680 -14.84922 -14.55862 -14.36517 -14.20674 -13.65324 -13.45779 -13.19158 -13.07110 -12.95063 -12.53037 -12.50021 -12.24076 -11.90548 -11.62034 -11.42802 -11.15603 -11.13525 -11.11166 -11.06206 -11.00908 -10.69746 -10.32655 -9.91973 -9.58806 -9.18778 -8.97706 -8.81483 -8.52535 -8.00161 -6.70028 -6.28094 -4.01910 1.20527 1.68786 2.71809 3.07544 3.19058 3.22505 3.28621 3.47421 4.05312 4.09414 4.26553 4.46439 4.62505 4.75758 4.76641 4.91261 4.98602 5.08157 5.17483 5.19150 5.23771 5.31262 5.40736 5.43696 5.48634 5.50846 5.59365 5.72416 5.74732 5.80680 5.89783 5.94384 5.98645 6.11065 6.23314 6.27109 6.29555 6.63351 6.66889 6.95805 7.22777 7.58017 7.70345 8.30415 8.33288 9.17674 10.78740 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.018512 B = 0.003543 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.171623 B = 7901.474455 C = 8522.911195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.104 4.104 3 C -0.141 4.141 4 C 0.140 3.860 5 H 0.090 0.910 6 C -0.158 4.158 7 C 0.092 3.908 8 N -0.642 5.642 9 C 0.593 3.407 10 O -0.531 6.531 11 C -0.150 4.150 12 C -0.100 4.100 13 C -0.143 4.143 14 C -0.056 4.056 15 C -0.107 4.107 16 S -0.036 6.036 17 C -0.519 4.519 18 H 0.076 0.924 19 C 0.073 3.927 20 N -0.870 5.870 21 Si 0.921 3.079 22 H -0.271 1.271 23 H -0.279 1.279 24 H -0.279 1.279 25 C -0.020 4.020 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.128 0.872 38 H 0.122 0.878 39 H 0.131 0.869 40 H 0.269 0.731 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.030 -0.511 12.640 23.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 C -0.198 4.198 4 C 0.037 3.963 5 H 0.108 0.892 6 C -0.196 4.196 7 C -0.031 4.031 8 N -0.379 5.379 9 C 0.385 3.615 10 O -0.408 6.408 11 C -0.155 4.155 12 C -0.119 4.119 13 C -0.163 4.163 14 C -0.077 4.077 15 C -0.217 4.217 16 S 0.198 5.802 17 C -0.666 4.666 18 H 0.094 0.906 19 C -0.136 4.136 20 N -0.505 5.505 21 Si 0.747 3.253 22 H -0.195 1.195 23 H -0.205 1.205 24 H -0.204 1.204 25 C -0.042 4.042 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.105 0.895 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.121 0.879 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.145 0.855 38 H 0.140 0.860 39 H 0.149 0.851 40 H 0.079 0.921 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -19.283 -1.480 11.062 22.280 hybrid contribution -0.156 1.981 0.742 2.121 sum -19.439 0.501 11.805 22.748 Atomic orbital electron populations 1.21759 0.94637 1.01664 1.01910 1.21270 0.95510 0.97040 0.98505 1.21825 1.01584 0.95224 1.01208 1.22727 0.80191 0.98188 0.95222 0.89197 1.23684 0.97576 1.00901 0.97427 1.23082 0.97288 0.99774 0.82931 1.49558 1.06308 1.73309 1.08687 1.17958 0.83616 0.75176 0.84758 1.90762 1.84594 1.50432 1.14992 1.19822 0.92283 1.09094 0.94301 1.21625 0.97453 0.98493 0.94288 1.21083 0.92567 1.03154 0.99501 1.21987 0.99226 0.93821 0.92646 1.22825 0.99254 1.01498 0.98149 1.83620 1.29459 1.13985 1.53097 1.22871 1.24881 0.92402 1.26477 0.90615 1.25005 0.95313 0.99041 0.94258 1.70003 1.23879 1.34707 1.21944 0.86071 0.78331 0.82644 0.78271 1.19525 1.20466 1.20431 1.21917 0.90507 0.91647 1.00094 0.92403 0.92611 0.92730 0.89504 0.92423 0.92833 0.92709 0.87934 0.89424 0.89646 0.89674 0.85468 0.85967 0.85144 0.92118 0.84409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.18 37.16 0.34 -0.75 16 2 C -0.10 -1.09 2.67 -90.62 -0.24 -1.34 16 3 C -0.14 -1.54 8.13 37.16 0.30 -1.24 16 4 C 0.14 1.34 3.83 -72.39 -0.28 1.06 16 5 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 6 C -0.16 -1.08 7.67 -26.21 -0.20 -1.28 16 7 C 0.09 0.75 6.11 -8.51 -0.05 0.70 16 8 N -0.64 -8.01 2.98 -178.56 -0.53 -8.54 16 9 C 0.59 10.13 7.54 -12.32 -0.09 10.04 16 10 O -0.53 -10.82 15.86 5.32 0.08 -10.74 16 11 C -0.15 -2.67 5.87 -105.00 -0.62 -3.28 16 12 C -0.10 -1.46 9.14 -39.12 -0.36 -1.81 16 13 C -0.14 -2.14 10.02 -39.67 -0.40 -2.54 16 14 C -0.06 -1.04 9.79 -39.26 -0.38 -1.42 16 15 C -0.11 -2.34 5.45 -39.00 -0.21 -2.56 16 16 S -0.04 -0.95 21.41 -107.50 -2.30 -3.25 16 17 C -0.52 -14.79 9.46 30.91 0.29 -14.50 16 18 H 0.08 2.14 7.79 -52.49 -0.41 1.73 16 19 C 0.07 2.06 5.49 -17.46 -0.10 1.96 16 20 N -0.87 -25.66 13.22 55.49 0.73 -24.92 16 21 Si 0.92 21.57 29.55 -169.99 -5.02 16.54 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 C -0.02 -0.42 9.34 -38.92 -0.36 -0.78 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 1.19 7.25 -51.93 -0.38 0.81 16 30 H 0.06 0.79 7.26 -51.93 -0.38 0.41 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.47 6.55 -51.93 -0.34 0.13 16 33 H 0.10 0.74 5.71 -51.93 -0.30 0.45 16 34 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.09 0.54 8.13 -51.93 -0.42 0.11 16 36 H 0.09 0.68 6.75 -51.93 -0.35 0.33 16 37 H 0.13 1.39 4.18 -52.49 -0.22 1.17 16 38 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 39 H 0.13 2.33 8.06 -52.49 -0.42 1.90 16 40 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.14 3.10 7.66 -52.49 -0.40 2.70 16 LS Contribution 348.60 15.07 5.25 5.25 Total: -1.00 -33.24 348.60 -9.85 -43.10 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -5.71 Total: 0.28 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -2.36 Total: -17.73 kcal Atomic # 7 Polarization: -33.66 SS G_CDS: 0.20 Total: -33.46 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.08 Total: -10.74 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -0.95 SS G_CDS: -2.30 Total: -3.25 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.24 -9.85 -43.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343198860.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.648 kcal (2) G-P(sol) polarization free energy of solvation -33.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds