Wall clock time and date at job start Tue Mar 31 2020 08:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47143 * 2 1 4 4 C 1.53001 * 109.47381 * 120.00192 * 2 1 3 5 5 H 1.09002 * 112.73794 * 49.25721 * 4 2 1 6 6 C 1.53496 * 113.46472 * 278.44346 * 4 2 1 7 7 C 1.53504 * 83.34189 * 219.15020 * 6 4 2 8 8 N 1.47062 * 87.98424 * 26.06872 * 7 6 4 9 9 C 1.34775 * 136.05942 * 152.84504 * 8 7 6 10 10 O 1.21551 * 120.00279 * 185.46319 * 9 8 7 11 11 C 1.47867 * 119.99822 * 5.46978 * 9 8 7 12 12 C 1.39671 * 120.09897 * 6.66312 * 11 9 8 13 13 C 1.38045 * 120.03568 * 179.71880 * 12 11 9 14 14 C 1.38176 * 120.24055 * 0.55956 * 13 12 11 15 15 C 1.39176 * 120.20642 * 359.71783 * 14 13 12 16 16 S 1.76203 * 120.02388 * 180.02562 * 15 14 13 17 17 C 1.76198 * 99.99799 * 274.89730 * 16 15 14 18 18 H 1.07996 * 120.00275 * 5.00232 * 17 16 15 19 19 C 1.38727 * 119.99813 * 185.01047 * 17 16 15 20 20 N 1.31631 * 120.00180 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00277 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46592 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47341 * 119.99574 * 21 19 17 24 24 H 1.48505 * 109.47181 * 239.99896 * 21 19 17 25 25 C 1.38879 * 119.95730 * 359.97438 * 15 14 13 26 26 H 1.08998 * 109.47362 * 59.99934 * 1 2 3 27 27 H 1.09002 * 109.47160 * 299.99756 * 1 2 3 28 28 H 1.08994 * 109.47232 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47160 * 240.00244 * 2 1 3 30 30 H 1.08999 * 109.47174 * 173.12117 * 3 2 1 31 31 H 1.08998 * 109.46982 * 293.12299 * 3 2 1 32 32 H 1.09000 * 109.47154 * 53.12057 * 3 2 1 33 33 H 1.09002 * 114.21000 * 332.73314 * 6 4 2 34 34 H 1.08995 * 114.20914 * 105.56505 * 6 4 2 35 35 H 1.08994 * 113.46498 * 271.28666 * 7 6 4 36 36 H 1.09002 * 113.51766 * 140.85789 * 7 6 4 37 37 H 1.08000 * 119.98284 * 0.02562 * 12 11 9 38 38 H 1.07997 * 119.87913 * 180.25567 * 13 12 11 39 39 H 1.08001 * 119.89929 * 179.69784 * 14 13 12 40 40 H 0.97003 * 119.99846 * 180.02562 * 20 19 17 41 41 H 1.08001 * 120.11751 * 179.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.5619 -1.6889 1.4018 6 6 2.0489 0.1623 2.5043 7 6 3.3724 -0.5621 2.7873 8 7 3.5071 -0.7724 1.3380 9 6 4.5265 -0.9381 0.4721 10 8 4.3065 -0.9959 -0.7219 11 6 5.9127 -1.0499 0.9747 12 6 6.1560 -1.1239 2.3481 13 6 7.4502 -1.2341 2.8156 14 6 8.5103 -1.2600 1.9297 15 6 8.2798 -1.1811 0.5594 16 16 9.6351 -1.2153 -0.5660 17 6 10.0751 0.4909 -0.5670 18 1 9.5744 1.1780 0.0990 19 6 11.0645 0.9516 -1.4233 20 7 11.6750 0.1140 -2.2348 21 14 11.5305 2.7605 -1.4250 22 1 10.7021 3.4859 -0.4285 23 1 12.9662 2.9022 -1.0730 24 1 11.2931 3.3317 -2.7751 25 6 6.9807 -1.0765 0.0796 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1230 1.4450 0.1231 31 1 1.7806 1.9196 -0.9451 32 1 1.5797 1.9907 0.8220 33 1 2.1573 1.2275 2.3003 34 1 1.2547 -0.0639 3.2157 35 1 3.2490 -1.4871 3.3505 36 1 4.1424 0.0863 3.2054 37 1 5.3308 -1.0999 3.0444 38 1 7.6351 -1.2953 3.8778 39 1 9.5209 -1.3414 2.3017 40 1 12.3670 0.4361 -2.8333 41 1 6.7989 -1.0147 -0.9832 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343198860.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:42:31 Heat of formation + Delta-G solvation = 3.439265 kcal Electronic energy + Delta-G solvation = -22277.542293 eV Core-core repulsion = 19055.917628 eV Total energy + Delta-G solvation = -3221.624665 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.93767 -39.98125 -38.61647 -35.52143 -34.67669 -32.57478 -31.97588 -30.29196 -28.12182 -27.78179 -26.82195 -25.08086 -23.65251 -22.90908 -21.66051 -20.22014 -19.50869 -18.34638 -17.66422 -17.21514 -16.95770 -16.85283 -16.29369 -15.76900 -15.73873 -15.29219 -14.98538 -14.64209 -14.46722 -14.06988 -13.99501 -13.75233 -13.49703 -13.18211 -13.16145 -13.02304 -12.99647 -12.67074 -12.54226 -12.34633 -12.19056 -11.94237 -11.80102 -11.76393 -11.27830 -11.09438 -10.90000 -10.69886 -10.07467 -9.74366 -9.63113 -8.83808 -8.41542 -6.22344 -0.19436 0.21538 1.27422 1.34999 1.44774 1.59961 1.79373 1.80251 2.22140 2.77308 2.91448 3.32674 3.39238 3.49770 3.86062 3.89792 3.94671 4.02649 4.04533 4.22602 4.30794 4.40585 4.43873 4.53518 4.59691 4.60940 4.70854 4.76163 4.83326 4.90233 5.01029 5.01725 5.08113 5.23757 5.25210 5.28279 5.28335 5.35946 5.42812 5.46573 5.51507 5.84889 6.13590 6.66145 6.98499 7.08823 8.66083 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.018512 B = 0.003543 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.171623 B = 7901.474455 C = 8522.911195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 C -0.137 4.137 4 C 0.128 3.872 5 H 0.110 0.890 6 C -0.135 4.135 7 C 0.082 3.918 8 N -0.644 5.644 9 C 0.583 3.417 10 O -0.585 6.585 11 C -0.154 4.154 12 C -0.075 4.075 13 C -0.121 4.121 14 C -0.065 4.065 15 C -0.127 4.127 16 S -0.099 6.099 17 C -0.535 4.535 18 H 0.068 0.932 19 C 0.018 3.982 20 N -0.907 5.907 21 Si 0.995 3.005 22 H -0.265 1.265 23 H -0.264 1.264 24 H -0.273 1.273 25 C -0.048 4.048 26 H 0.052 0.948 27 H 0.080 0.920 28 H 0.061 0.939 29 H 0.041 0.959 30 H 0.022 0.978 31 H 0.043 0.957 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.130 0.870 35 H 0.120 0.880 36 H 0.094 0.906 37 H 0.178 0.822 38 H 0.177 0.823 39 H 0.134 0.866 40 H 0.274 0.726 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.725 0.612 17.400 28.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.126 4.126 3 C -0.194 4.194 4 C 0.026 3.974 5 H 0.127 0.873 6 C -0.172 4.172 7 C -0.039 4.039 8 N -0.378 5.378 9 C 0.374 3.626 10 O -0.467 6.467 11 C -0.159 4.159 12 C -0.093 4.093 13 C -0.140 4.140 14 C -0.086 4.086 15 C -0.238 4.238 16 S 0.136 5.864 17 C -0.682 4.682 18 H 0.086 0.914 19 C -0.187 4.187 20 N -0.543 5.543 21 Si 0.816 3.184 22 H -0.189 1.189 23 H -0.189 1.189 24 H -0.198 1.198 25 C -0.070 4.070 26 H 0.071 0.929 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.059 0.941 30 H 0.042 0.958 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.117 0.883 34 H 0.148 0.852 35 H 0.138 0.862 36 H 0.113 0.887 37 H 0.195 0.805 38 H 0.194 0.806 39 H 0.152 0.848 40 H 0.083 0.917 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -22.016 -0.363 15.882 27.149 hybrid contribution 0.478 1.577 -0.636 1.766 sum -21.538 1.213 15.246 26.416 Atomic orbital electron populations 1.21700 0.92005 1.02528 1.02908 1.21244 0.97649 0.96198 0.97479 1.21799 0.99487 0.96147 1.01982 1.23147 0.78209 0.99931 0.96097 0.87273 1.23626 0.97906 0.99869 0.95810 1.23564 0.98329 1.01841 0.80153 1.49732 1.06806 1.70601 1.10651 1.17923 0.84404 0.75526 0.84712 1.90730 1.85353 1.53193 1.17413 1.20008 0.91947 1.08450 0.95462 1.22168 0.99009 0.95035 0.93105 1.21593 0.91145 0.99898 1.01362 1.22088 1.00976 0.94166 0.91398 1.22474 0.97265 1.05330 0.98704 1.83524 1.32662 1.14054 1.56182 1.23085 1.25235 0.93133 1.26770 0.91395 1.26048 0.94955 1.04132 0.93540 1.70127 1.24490 1.37018 1.22674 0.84964 0.78583 0.76311 0.78501 1.18899 1.18866 1.19790 1.21600 0.91676 0.94571 0.99192 0.92907 0.90097 0.91950 0.94090 0.95839 0.93798 0.89622 0.88334 0.85213 0.86177 0.88743 0.80527 0.80562 0.84829 0.91671 0.88159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 9.18 71.98 0.66 -1.08 16 2 C -0.11 -2.17 2.67 -10.79 -0.03 -2.20 16 3 C -0.14 -2.94 8.13 71.98 0.58 -2.36 16 4 C 0.13 2.08 3.83 41.79 0.16 2.24 16 5 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 6 C -0.13 -1.09 7.67 30.93 0.24 -0.85 16 7 C 0.08 0.88 6.11 83.18 0.51 1.39 16 8 N -0.64 -14.69 2.98 -837.11 -2.50 -17.19 16 9 C 0.58 20.36 7.54 86.79 0.65 21.01 16 10 O -0.59 -25.93 15.86 -3.88 -0.06 -25.99 16 11 C -0.15 -5.48 5.87 -20.11 -0.12 -5.60 16 12 C -0.08 -1.91 9.14 22.57 0.21 -1.71 16 13 C -0.12 -3.13 10.02 22.21 0.22 -2.91 16 14 C -0.07 -2.40 9.79 22.48 0.22 -2.18 16 15 C -0.13 -5.87 5.45 22.65 0.12 -5.74 16 16 S -0.10 -5.59 21.41 -56.49 -1.21 -6.80 16 17 C -0.54 -32.07 9.46 67.94 0.64 -31.42 16 18 H 0.07 4.02 7.79 -2.91 -0.02 4.00 16 19 C 0.02 1.07 5.49 84.84 0.47 1.54 16 20 N -0.91 -55.64 13.22 21.64 0.29 -55.36 16 21 Si 0.99 45.20 29.55 68.60 2.03 47.22 16 22 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 23 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 24 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 25 C -0.05 -2.19 9.34 22.70 0.21 -1.98 16 26 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.04 1.21 7.25 -2.39 -0.02 1.19 16 30 H 0.02 0.65 7.26 -2.39 -0.02 0.63 16 31 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.09 1.26 6.55 -2.39 -0.02 1.25 16 33 H 0.10 0.94 5.71 -2.39 -0.01 0.93 16 34 H 0.13 0.13 8.14 -2.39 -0.02 0.11 16 35 H 0.12 0.61 8.13 -2.39 -0.02 0.59 16 36 H 0.09 0.91 6.75 -2.39 -0.02 0.89 16 37 H 0.18 2.72 4.18 -2.91 -0.01 2.71 16 38 H 0.18 2.80 8.06 -2.91 -0.02 2.78 16 39 H 0.13 4.73 8.06 -2.91 -0.02 4.71 16 40 H 0.27 15.51 8.31 -92.71 -0.77 14.73 16 41 H 0.10 5.14 7.66 -2.91 -0.02 5.12 16 Total: -1.00 -83.05 348.60 4.33 -78.72 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: 1.03 Total: 11.25 kcal Atomic # 6 Polarization: -36.61 SS G_CDS: 4.75 Total: -31.86 kcal Atomic # 7 Polarization: -70.33 SS G_CDS: -2.21 Total: -72.54 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.06 Total: -25.99 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Atomic # 16 Polarization: -5.59 SS G_CDS: -1.21 Total: -6.80 kcal Total: -83.05 4.33 -78.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343198860.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.161 kcal (2) G-P(sol) polarization free energy of solvation -83.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds