Wall clock time and date at job start Tue Mar 31 2020 08:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 112.84700 * 2 1 4 4 C 1.53776 * 113.61868 * 228.69364 * 2 1 3 5 5 C 1.53778 * 87.08435 * 220.01933 * 4 2 1 6 6 C 1.53780 * 113.61540 * 131.19335 * 2 1 3 7 7 H 1.08999 * 113.61340 * 25.35263 * 6 2 1 8 8 N 1.46500 * 113.61698 * 254.53261 * 6 2 1 9 9 C 1.34772 * 120.00334 * 154.99606 * 8 6 2 10 10 O 1.21555 * 119.99750 * 0.02562 * 9 8 6 11 11 C 1.47861 * 120.00323 * 179.97438 * 9 8 6 12 12 C 1.39671 * 120.10133 * 0.02562 * 11 9 8 13 13 C 1.38041 * 120.03860 * 180.29223 * 12 11 9 14 14 C 1.38175 * 120.24318 * 359.45031 * 13 12 11 15 15 C 1.39182 * 120.20204 * 0.55271 * 14 13 12 16 16 S 1.76201 * 120.01957 * 179.75034 * 15 14 13 17 17 C 1.76209 * 99.99721 * 265.48233 * 16 15 14 18 18 H 1.07996 * 119.99608 * 5.11856 * 17 16 15 19 19 C 1.38729 * 119.99610 * 185.12254 * 17 16 15 20 20 N 1.31613 * 120.00481 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99370 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47551 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47011 * 119.99802 * 21 19 17 24 24 H 1.48497 * 109.46992 * 239.99551 * 21 19 17 25 25 C 1.38870 * 119.95827 * 359.71930 * 15 14 13 26 26 H 1.08997 * 109.47021 * 288.80668 * 1 2 3 27 27 H 1.08999 * 109.47203 * 48.80688 * 1 2 3 28 28 H 1.08997 * 109.46941 * 168.80524 * 1 2 3 29 29 H 1.09007 * 109.47074 * 191.19380 * 3 2 1 30 30 H 1.08999 * 109.47084 * 311.19147 * 3 2 1 31 31 H 1.09001 * 109.47067 * 71.19529 * 3 2 1 32 32 H 1.09008 * 113.61414 * 334.56858 * 4 2 1 33 33 H 1.09002 * 113.61527 * 105.46726 * 4 2 1 34 34 H 1.09002 * 113.61070 * 270.88710 * 5 4 2 35 35 H 1.08999 * 113.61443 * 139.97763 * 5 4 2 36 36 H 0.97002 * 120.00136 * 335.00301 * 8 6 2 37 37 H 1.08005 * 119.97673 * 0.02562 * 12 11 9 38 38 H 1.08002 * 119.87658 * 179.71896 * 13 12 11 39 39 H 1.08004 * 119.89596 * 180.27582 * 14 13 12 40 40 H 0.97003 * 120.00325 * 180.02562 * 20 19 17 41 41 H 1.08006 * 120.12335 * 180.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1461 -0.9300 -1.0584 5 6 3.1924 -1.3135 0.0013 6 6 2.1461 -0.9280 1.0603 7 1 1.4940 -1.7514 1.3517 8 7 2.7092 -0.2142 2.2090 9 6 2.8173 -0.8343 3.4008 10 8 2.4479 -1.9860 3.5223 11 6 3.3861 -0.1141 4.5601 12 6 3.8117 1.2091 4.4226 13 6 4.3481 1.8783 5.5043 14 6 4.4563 1.2477 6.7290 15 6 4.0355 -0.0706 6.8772 16 16 4.1817 -0.8722 8.4395 17 6 5.7339 -1.6783 8.2257 18 1 6.3148 -1.5030 7.3323 19 6 6.2097 -2.5380 9.2050 20 7 5.5020 -2.7513 10.2940 21 14 7.8557 -3.3919 8.9785 22 1 8.4492 -2.9863 7.6791 23 1 8.7700 -3.0054 10.0831 24 1 7.6560 -4.8633 8.9932 25 6 3.4997 -0.7536 5.7933 26 1 -0.3633 0.3313 0.9728 27 1 -0.3633 0.6768 -0.7733 28 1 -0.3633 -1.0081 -0.1995 29 1 3.1943 1.3534 -0.1995 30 1 1.6415 2.0076 -0.7733 31 1 1.9599 1.8734 0.9728 32 1 1.4946 -1.7549 -1.3473 33 1 2.5651 -0.4006 -1.9141 34 1 4.0711 -0.6685 0.0007 35 1 3.4444 -2.3740 0.0023 36 1 3.0042 0.7047 2.1120 37 1 3.7249 1.7076 3.4684 38 1 4.6805 2.9000 5.3939 39 1 4.8728 1.7781 7.5726 40 1 5.8349 -3.3521 10.9789 41 1 3.1719 -1.7766 5.9055 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345848591.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:13 Heat of formation + Delta-G solvation = -5.395228 kcal Electronic energy + Delta-G solvation = -21916.837308 eV Core-core repulsion = 18694.829550 eV Total energy + Delta-G solvation = -3222.007758 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.72587 -39.18886 -37.57624 -33.70273 -32.50387 -31.10963 -30.66395 -30.43090 -27.86181 -25.60510 -25.54521 -23.22552 -22.69924 -22.12857 -20.34636 -19.09080 -18.00444 -17.28850 -16.57298 -15.82291 -15.29267 -15.19297 -14.87006 -14.84578 -14.36284 -14.12881 -13.96530 -13.50553 -13.41599 -13.10075 -12.84105 -12.62399 -12.48177 -12.35869 -11.91781 -11.77723 -11.64872 -11.14935 -11.13488 -11.10917 -11.09100 -10.70221 -10.56537 -10.51500 -9.94995 -9.71845 -9.16435 -9.07023 -8.98641 -8.57522 -8.02274 -6.70704 -6.28215 -4.02054 1.17109 1.67040 3.04169 3.15292 3.20323 3.24163 3.29650 3.48467 4.04784 4.08794 4.23734 4.29770 4.45439 4.63467 4.83432 4.87625 5.06584 5.08691 5.18371 5.23301 5.25893 5.27260 5.45873 5.47853 5.48990 5.51700 5.62437 5.66896 5.73603 5.75828 5.85697 5.88021 5.97994 6.03173 6.12057 6.25801 6.47436 6.60088 6.63891 6.93912 7.19775 7.53664 7.58379 8.32502 8.33559 9.17790 10.78591 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.021614 B = 0.003143 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.139065 B = 8905.588920 C = 9433.068947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.095 4.095 3 C -0.135 4.135 4 C -0.130 4.130 5 C -0.154 4.154 6 C 0.132 3.868 7 H 0.115 0.885 8 N -0.721 5.721 9 C 0.563 3.437 10 O -0.535 6.535 11 C -0.155 4.155 12 C -0.091 4.091 13 C -0.141 4.141 14 C -0.056 4.056 15 C -0.106 4.106 16 S -0.036 6.036 17 C -0.519 4.519 18 H 0.076 0.924 19 C 0.073 3.927 20 N -0.870 5.870 21 Si 0.921 3.079 22 H -0.271 1.271 23 H -0.279 1.279 24 H -0.278 1.278 25 C -0.019 4.019 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.399 0.601 37 H 0.115 0.885 38 H 0.123 0.877 39 H 0.131 0.869 40 H 0.269 0.731 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.191 9.816 -21.024 24.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.096 4.096 3 C -0.192 4.192 4 C -0.168 4.168 5 C -0.193 4.193 6 C 0.027 3.973 7 H 0.133 0.867 8 N -0.374 5.374 9 C 0.352 3.648 10 O -0.412 6.412 11 C -0.160 4.160 12 C -0.110 4.110 13 C -0.161 4.161 14 C -0.077 4.077 15 C -0.217 4.217 16 S 0.199 5.801 17 C -0.666 4.666 18 H 0.094 0.906 19 C -0.136 4.136 20 N -0.505 5.505 21 Si 0.747 3.253 22 H -0.195 1.195 23 H -0.205 1.205 24 H -0.204 1.204 25 C -0.041 4.041 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.236 0.764 37 H 0.133 0.867 38 H 0.141 0.859 39 H 0.149 0.851 40 H 0.079 0.921 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.176 8.851 -19.783 22.830 hybrid contribution 1.988 -0.064 -1.274 2.362 sum -5.188 8.787 -21.057 23.399 Atomic orbital electron populations 1.21748 0.93656 1.02025 1.02007 1.22275 0.95878 0.95301 0.96143 1.21610 1.00864 0.94525 1.02214 1.22901 0.98259 0.99138 0.96485 1.23403 0.97752 1.02289 0.95862 1.22631 0.95636 0.95608 0.83445 0.86681 1.45937 1.64895 1.16954 1.09606 1.18465 0.77554 0.86158 0.82621 1.90763 1.48891 1.17202 1.84359 1.19890 1.06436 0.95187 0.94443 1.21116 0.98102 0.93408 0.98353 1.21051 1.01795 1.00023 0.93194 1.21957 0.94502 0.94237 0.96970 1.22852 1.00060 0.96853 1.01917 1.83608 1.29767 1.59784 1.06958 1.22880 1.03543 1.31502 1.08690 0.90572 1.25002 0.98465 0.95557 0.94572 1.69991 1.37575 1.35290 1.07685 0.86068 0.81726 0.79101 0.78418 1.19497 1.20477 1.20421 1.21957 0.92349 0.99811 0.89939 0.92314 0.92418 0.92275 0.92047 0.91756 0.92086 0.89741 0.90896 0.89796 0.90879 0.76440 0.86700 0.85869 0.85066 0.92106 0.84316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.19 37.16 0.34 -0.67 16 2 C -0.10 -0.73 1.37 -153.70 -0.21 -0.94 16 3 C -0.13 -0.86 8.05 37.16 0.30 -0.56 16 4 C -0.13 -0.93 7.20 -25.92 -0.19 -1.12 16 5 C -0.15 -1.41 7.53 -25.92 -0.20 -1.61 16 6 C 0.13 1.40 3.69 -67.12 -0.25 1.15 16 7 H 0.12 1.44 7.42 -51.93 -0.39 1.05 16 8 N -0.72 -8.59 5.17 -53.96 -0.28 -8.86 16 9 C 0.56 9.28 7.77 -12.32 -0.10 9.19 16 10 O -0.53 -10.79 15.94 5.32 0.08 -10.70 16 11 C -0.15 -2.65 5.87 -105.00 -0.62 -3.26 16 12 C -0.09 -1.25 9.54 -39.12 -0.37 -1.63 16 13 C -0.14 -2.02 10.02 -39.68 -0.40 -2.42 16 14 C -0.06 -1.00 9.79 -39.25 -0.38 -1.38 16 15 C -0.11 -2.29 5.45 -39.00 -0.21 -2.50 16 16 S -0.04 -0.93 21.41 -107.50 -2.30 -3.23 16 17 C -0.52 -14.75 9.46 30.91 0.29 -14.45 16 18 H 0.08 2.15 7.79 -52.49 -0.41 1.74 16 19 C 0.07 2.06 5.49 -17.46 -0.10 1.96 16 20 N -0.87 -25.58 13.22 55.49 0.73 -24.84 16 21 Si 0.92 21.59 29.55 -169.99 -5.02 16.57 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 C -0.02 -0.39 9.34 -38.92 -0.36 -0.75 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.43 7.94 -51.93 -0.41 0.01 16 29 H 0.06 0.37 7.35 -51.93 -0.38 -0.01 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.39 7.10 -51.93 -0.37 0.02 16 32 H 0.08 0.57 7.96 -51.92 -0.41 0.16 16 33 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 34 H 0.08 0.74 7.66 -51.93 -0.40 0.34 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.40 3.75 4.69 -40.82 -0.19 3.56 16 37 H 0.12 1.12 6.40 -52.48 -0.34 0.79 16 38 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.13 2.24 8.06 -52.48 -0.42 1.82 16 40 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.14 3.11 7.65 -52.48 -0.40 2.71 16 LS Contribution 353.44 15.07 5.33 5.33 Total: -1.00 -32.55 353.44 -9.69 -42.24 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -5.79 Total: 2.51 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: -2.45 Total: -19.01 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: 0.45 Total: -33.71 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.08 Total: -10.70 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -0.93 SS G_CDS: -2.30 Total: -3.23 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.55 -9.69 -42.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345848591.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.844 kcal (2) G-P(sol) polarization free energy of solvation -32.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds