Wall clock time and date at job start Tue Mar 31 2020 08:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 112.84700 * 2 1 4 4 C 1.53776 * 113.61868 * 228.69364 * 2 1 3 5 5 C 1.53778 * 87.08435 * 220.01933 * 4 2 1 6 6 C 1.53780 * 113.61540 * 131.19335 * 2 1 3 7 7 H 1.08999 * 113.61340 * 25.35263 * 6 2 1 8 8 N 1.46500 * 113.61698 * 254.53261 * 6 2 1 9 9 C 1.34772 * 120.00334 * 154.99606 * 8 6 2 10 10 O 1.21555 * 119.99750 * 0.02562 * 9 8 6 11 11 C 1.47861 * 120.00323 * 179.97438 * 9 8 6 12 12 C 1.39671 * 120.10133 * 0.02562 * 11 9 8 13 13 C 1.38041 * 120.03860 * 180.29223 * 12 11 9 14 14 C 1.38175 * 120.24318 * 359.45031 * 13 12 11 15 15 C 1.39182 * 120.20204 * 0.55271 * 14 13 12 16 16 S 1.76201 * 120.01957 * 179.75034 * 15 14 13 17 17 C 1.76209 * 99.99721 * 265.48233 * 16 15 14 18 18 H 1.07996 * 119.99608 * 5.11856 * 17 16 15 19 19 C 1.38729 * 119.99610 * 185.12254 * 17 16 15 20 20 N 1.31613 * 120.00481 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99370 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47551 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47011 * 119.99802 * 21 19 17 24 24 H 1.48497 * 109.46992 * 239.99551 * 21 19 17 25 25 C 1.38870 * 119.95827 * 359.71930 * 15 14 13 26 26 H 1.08997 * 109.47021 * 288.80668 * 1 2 3 27 27 H 1.08999 * 109.47203 * 48.80688 * 1 2 3 28 28 H 1.08997 * 109.46941 * 168.80524 * 1 2 3 29 29 H 1.09007 * 109.47074 * 191.19380 * 3 2 1 30 30 H 1.08999 * 109.47084 * 311.19147 * 3 2 1 31 31 H 1.09001 * 109.47067 * 71.19529 * 3 2 1 32 32 H 1.09008 * 113.61414 * 334.56858 * 4 2 1 33 33 H 1.09002 * 113.61527 * 105.46726 * 4 2 1 34 34 H 1.09002 * 113.61070 * 270.88710 * 5 4 2 35 35 H 1.08999 * 113.61443 * 139.97763 * 5 4 2 36 36 H 0.97002 * 120.00136 * 335.00301 * 8 6 2 37 37 H 1.08005 * 119.97673 * 0.02562 * 12 11 9 38 38 H 1.08002 * 119.87658 * 179.71896 * 13 12 11 39 39 H 1.08004 * 119.89596 * 180.27582 * 14 13 12 40 40 H 0.97003 * 120.00325 * 180.02562 * 20 19 17 41 41 H 1.08006 * 120.12335 * 180.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1461 -0.9300 -1.0584 5 6 3.1924 -1.3135 0.0013 6 6 2.1461 -0.9280 1.0603 7 1 1.4940 -1.7514 1.3517 8 7 2.7092 -0.2142 2.2090 9 6 2.8173 -0.8343 3.4008 10 8 2.4479 -1.9860 3.5223 11 6 3.3861 -0.1141 4.5601 12 6 3.8117 1.2091 4.4226 13 6 4.3481 1.8783 5.5043 14 6 4.4563 1.2477 6.7290 15 6 4.0355 -0.0706 6.8772 16 16 4.1817 -0.8722 8.4395 17 6 5.7339 -1.6783 8.2257 18 1 6.3148 -1.5030 7.3323 19 6 6.2097 -2.5380 9.2050 20 7 5.5020 -2.7513 10.2940 21 14 7.8557 -3.3919 8.9785 22 1 8.4492 -2.9863 7.6791 23 1 8.7700 -3.0054 10.0831 24 1 7.6560 -4.8633 8.9932 25 6 3.4997 -0.7536 5.7933 26 1 -0.3633 0.3313 0.9728 27 1 -0.3633 0.6768 -0.7733 28 1 -0.3633 -1.0081 -0.1995 29 1 3.1943 1.3534 -0.1995 30 1 1.6415 2.0076 -0.7733 31 1 1.9599 1.8734 0.9728 32 1 1.4946 -1.7549 -1.3473 33 1 2.5651 -0.4006 -1.9141 34 1 4.0711 -0.6685 0.0007 35 1 3.4444 -2.3740 0.0023 36 1 3.0042 0.7047 2.1120 37 1 3.7249 1.7076 3.4684 38 1 4.6805 2.9000 5.3939 39 1 4.8728 1.7781 7.5726 40 1 5.8349 -3.3521 10.9789 41 1 3.1719 -1.7766 5.9055 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345848591.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:12 Heat of formation + Delta-G solvation = -24.966360 kcal Electronic energy + Delta-G solvation = -21917.685976 eV Core-core repulsion = 18694.829550 eV Total energy + Delta-G solvation = -3222.856426 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.70249 -40.30376 -38.90652 -34.86918 -34.66886 -32.19494 -31.89974 -31.44949 -28.37877 -27.76267 -26.56538 -24.39282 -23.60903 -23.30229 -21.62422 -20.23911 -19.60763 -18.59734 -17.63497 -17.05664 -16.95060 -16.66976 -16.19216 -15.90093 -15.59694 -15.46596 -14.91483 -14.86224 -14.62161 -14.11959 -13.87700 -13.80955 -13.26538 -13.15418 -13.11947 -13.02038 -12.99256 -12.72569 -12.65232 -12.40113 -12.36150 -11.77791 -11.74578 -11.29507 -11.25225 -11.22267 -11.03869 -10.75174 -10.15662 -9.87040 -9.70680 -8.81944 -8.40708 -6.20847 -0.19941 0.23992 1.28492 1.35423 1.45490 1.63743 1.77997 2.09527 2.23517 2.78455 2.92363 3.38066 3.40312 3.59054 3.67572 3.81343 3.91350 3.92905 4.00702 4.28343 4.34200 4.45966 4.53284 4.61412 4.66124 4.73514 4.80675 4.90580 4.90932 5.00016 5.00862 5.11455 5.15940 5.20609 5.22862 5.30486 5.37286 5.39392 5.42795 5.49530 5.61555 5.85350 6.14601 6.47080 6.99702 7.13557 8.66697 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.021614 B = 0.003143 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.139065 B = 8905.588920 C = 9433.068947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.083 4.083 3 C -0.137 4.137 4 C -0.119 4.119 5 C -0.154 4.154 6 C 0.112 3.888 7 H 0.087 0.913 8 N -0.695 5.695 9 C 0.560 3.440 10 O -0.585 6.585 11 C -0.158 4.158 12 C -0.064 4.064 13 C -0.119 4.119 14 C -0.063 4.063 15 C -0.128 4.128 16 S -0.096 6.096 17 C -0.536 4.536 18 H 0.067 0.933 19 C 0.019 3.981 20 N -0.906 5.906 21 Si 0.993 3.007 22 H -0.266 1.266 23 H -0.264 1.264 24 H -0.272 1.272 25 C -0.046 4.046 26 H 0.047 0.953 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.058 0.942 36 H 0.415 0.585 37 H 0.172 0.828 38 H 0.178 0.822 39 H 0.136 0.864 40 H 0.274 0.726 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.989 12.907 -24.496 28.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.083 4.083 3 C -0.194 4.194 4 C -0.157 4.157 5 C -0.193 4.193 6 C 0.008 3.992 7 H 0.105 0.895 8 N -0.348 5.348 9 C 0.348 3.652 10 O -0.466 6.466 11 C -0.163 4.163 12 C -0.082 4.082 13 C -0.138 4.138 14 C -0.084 4.084 15 C -0.239 4.239 16 S 0.139 5.861 17 C -0.683 4.683 18 H 0.085 0.915 19 C -0.186 4.186 20 N -0.542 5.542 21 Si 0.815 3.185 22 H -0.190 1.190 23 H -0.189 1.189 24 H -0.198 1.198 25 C -0.068 4.068 26 H 0.066 0.934 27 H 0.094 0.906 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.104 0.896 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.076 0.924 36 H 0.255 0.745 37 H 0.189 0.811 38 H 0.195 0.805 39 H 0.154 0.846 40 H 0.083 0.917 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.983 11.990 -23.292 26.871 hybrid contribution 1.516 -0.923 -0.346 1.808 sum -4.467 11.068 -23.638 26.480 Atomic orbital electron populations 1.21770 0.93550 1.02270 1.01998 1.22267 0.95955 0.95936 0.94188 1.21677 1.01501 0.93228 1.03038 1.22875 0.97253 0.99126 0.96449 1.23424 0.98234 1.01713 0.95927 1.22880 0.96611 0.96245 0.83485 0.89473 1.45772 1.63264 1.17391 1.08352 1.18491 0.77341 0.85609 0.83725 1.90745 1.51252 1.19433 1.85193 1.19994 1.06476 0.96750 0.93079 1.21690 0.94584 0.91363 1.00584 1.21563 0.99393 1.01883 0.90993 1.22087 0.94397 0.92639 0.99237 1.22499 1.03615 0.98420 0.99397 1.83482 1.29728 1.61010 1.11911 1.23092 1.04453 1.32190 1.08538 0.91512 1.26014 1.02467 0.96071 0.94044 1.70110 1.39535 1.36033 1.08561 0.84990 0.76902 0.77858 0.78781 1.19032 1.18904 1.19769 1.21628 0.94560 0.98759 0.91890 0.93401 0.90626 0.92703 0.91121 0.90236 0.91759 0.89622 0.88873 0.88679 0.92352 0.74538 0.81101 0.80493 0.84583 0.91669 0.88138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.19 71.98 0.66 -1.09 16 2 C -0.08 -1.04 1.37 -51.66 -0.07 -1.11 16 3 C -0.14 -1.13 8.05 71.98 0.58 -0.55 16 4 C -0.12 -1.38 7.20 31.12 0.22 -1.15 16 5 C -0.15 -2.54 7.53 31.12 0.23 -2.31 16 6 C 0.11 2.25 3.69 45.52 0.17 2.42 16 7 H 0.09 2.27 7.42 -2.39 -0.02 2.25 16 8 N -0.70 -15.12 5.17 -442.90 -2.29 -17.41 16 9 C 0.56 18.43 7.77 86.79 0.67 19.11 16 10 O -0.59 -24.98 15.94 -3.89 -0.06 -25.05 16 11 C -0.16 -5.30 5.87 -20.11 -0.12 -5.42 16 12 C -0.06 -1.48 9.54 22.57 0.22 -1.27 16 13 C -0.12 -2.87 10.02 22.21 0.22 -2.65 16 14 C -0.06 -2.19 9.79 22.48 0.22 -1.97 16 15 C -0.13 -5.75 5.45 22.65 0.12 -5.63 16 16 S -0.10 -5.33 21.41 -56.49 -1.21 -6.54 16 17 C -0.54 -31.90 9.46 67.94 0.64 -31.26 16 18 H 0.07 3.95 7.79 -2.91 -0.02 3.93 16 19 C 0.02 1.12 5.49 84.84 0.47 1.58 16 20 N -0.91 -55.24 13.22 21.63 0.29 -54.95 16 21 Si 0.99 45.19 29.55 68.60 2.03 47.22 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 23 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 24 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 25 C -0.05 -2.03 9.34 22.70 0.21 -1.82 16 26 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.05 0.73 7.94 -2.39 -0.02 0.71 16 29 H 0.07 0.48 7.35 -2.38 -0.02 0.46 16 30 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.50 7.10 -2.39 -0.02 0.48 16 32 H 0.09 0.98 7.96 -2.38 -0.02 0.96 16 33 H 0.09 0.76 8.10 -2.39 -0.02 0.74 16 34 H 0.09 1.36 7.66 -2.39 -0.02 1.35 16 35 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.41 5.99 4.69 -92.71 -0.43 5.56 16 37 H 0.17 2.09 6.40 -2.91 -0.02 2.07 16 38 H 0.18 2.53 8.06 -2.91 -0.02 2.51 16 39 H 0.14 4.54 8.06 -2.91 -0.02 4.51 16 40 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 41 H 0.10 5.04 7.65 -2.91 -0.02 5.01 16 Total: -1.00 -78.52 353.44 3.81 -74.71 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.60 Total: 15.13 kcal Atomic # 6 Polarization: -37.57 SS G_CDS: 4.46 Total: -33.11 kcal Atomic # 7 Polarization: -70.36 SS G_CDS: -2.01 Total: -72.36 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.06 Total: -25.05 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Atomic # 16 Polarization: -5.33 SS G_CDS: -1.21 Total: -6.54 kcal Total: -78.52 3.81 -74.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345848591.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.747 kcal (2) G-P(sol) polarization free energy of solvation -78.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds