Wall clock time and date at job start Tue Mar 31 2020 08:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 112.90714 * 2 1 4 4 C 1.53946 * 113.61478 * 228.66901 * 2 1 3 5 5 C 1.53783 * 87.11272 * 270.84376 * 4 2 1 6 6 C 1.53774 * 87.08171 * 334.63946 * 5 4 2 7 7 H 1.09005 * 113.61642 * 270.80092 * 6 5 4 8 8 N 1.46493 * 113.61899 * 139.98104 * 6 5 4 9 9 C 1.34776 * 120.00245 * 105.85732 * 8 6 5 10 10 O 1.21547 * 120.00171 * 0.02562 * 9 8 6 11 11 C 1.47867 * 120.00124 * 180.02562 * 9 8 6 12 12 C 1.39674 * 120.09995 * 0.27926 * 11 9 8 13 13 C 1.38039 * 120.03866 * 180.23179 * 12 11 9 14 14 C 1.38179 * 120.24009 * 359.48725 * 13 12 11 15 15 C 1.39177 * 120.20680 * 0.26303 * 14 13 12 16 16 S 1.76197 * 120.02454 * 179.97438 * 15 14 13 17 17 C 1.76204 * 100.00117 * 85.48525 * 16 15 14 18 18 H 1.08000 * 119.99435 * 5.11288 * 17 16 15 19 19 C 1.38722 * 120.00061 * 185.11857 * 17 16 15 20 20 N 1.31627 * 120.00078 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00215 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46952 * 59.99593 * 21 19 17 23 23 H 1.48497 * 109.47677 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47164 * 300.00137 * 21 19 17 25 25 C 1.38881 * 119.95454 * 359.97438 * 15 14 13 26 26 H 1.08998 * 109.47053 * 288.75282 * 1 2 3 27 27 H 1.09001 * 109.46726 * 48.75368 * 1 2 3 28 28 H 1.08998 * 109.47236 * 168.75143 * 1 2 3 29 29 H 1.09003 * 109.46781 * 191.24851 * 3 2 1 30 30 H 1.08994 * 109.47082 * 311.24552 * 3 2 1 31 31 H 1.08997 * 109.47329 * 71.25131 * 3 2 1 32 32 H 1.09010 * 113.53838 * 156.29191 * 4 2 1 33 33 H 1.09004 * 113.74374 * 25.42759 * 4 2 1 34 34 H 1.09002 * 113.61311 * 220.08511 * 5 4 2 35 35 H 1.08998 * 113.60934 * 89.18872 * 5 4 2 36 36 H 0.97004 * 120.00049 * 285.86820 * 8 6 5 37 37 H 1.08005 * 119.98473 * 359.97438 * 12 11 9 38 38 H 1.08004 * 119.88106 * 179.77244 * 13 12 11 39 39 H 1.08003 * 119.89824 * 180.27576 * 14 13 12 40 40 H 0.97000 * 119.99781 * 179.97438 * 20 19 17 41 41 H 1.07999 * 120.11865 * 179.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1467 -0.9315 -1.0592 5 6 2.0949 -2.0438 0.0015 6 6 2.1459 -0.9290 1.0595 7 1 3.1585 -0.6489 1.3502 8 7 1.2703 -1.1702 2.2089 9 6 1.7982 -1.5417 3.3920 10 8 3.0009 -1.6762 3.5055 11 6 0.9143 -1.7857 4.5521 12 6 -0.4685 -1.6375 4.4225 13 6 -1.2921 -1.8609 5.5075 14 6 -0.7548 -2.2419 6.7222 15 6 0.6212 -2.3976 6.8613 16 16 1.3012 -2.8830 8.4126 17 6 1.1520 -4.6335 8.2779 18 1 0.8030 -5.0763 7.3568 19 6 1.4825 -5.4427 9.3551 20 7 1.9072 -4.9029 10.4779 21 14 1.3236 -7.2985 9.2126 22 1 2.1968 -7.7872 8.1153 23 1 1.7361 -7.9304 10.4916 24 1 -0.0878 -7.6532 8.9172 25 6 1.4580 -2.1702 5.7764 26 1 -0.3633 0.3304 0.9731 27 1 -0.3633 0.6776 -0.7727 28 1 -0.3633 -1.0079 -0.2005 29 1 3.1954 1.3516 -0.2005 30 1 1.6429 2.0077 -0.7726 31 1 1.9627 1.8726 0.9731 32 1 3.1595 -0.6511 -1.3488 33 1 1.4969 -1.1138 -1.9152 34 1 2.9746 -2.6875 0.0025 35 1 1.1597 -2.6036 0.0018 36 1 0.3105 -1.0627 2.1184 37 1 -0.8933 -1.3438 3.4739 38 1 -2.3607 -1.7420 5.4054 39 1 -1.4047 -2.4196 7.5663 40 1 2.1380 -5.4688 11.2312 41 1 2.5262 -2.2899 5.8815 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345848594.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:14 Heat of formation + Delta-G solvation = -5.454620 kcal Electronic energy + Delta-G solvation = -21880.061179 eV Core-core repulsion = 18658.050846 eV Total energy + Delta-G solvation = -3222.010333 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.72714 -39.19048 -37.58013 -33.70935 -32.50500 -31.11792 -30.66711 -30.43272 -27.87136 -25.63946 -25.51487 -23.23003 -22.70396 -22.13380 -20.34614 -19.08935 -18.01681 -17.29810 -16.57506 -15.82416 -15.30736 -15.20004 -14.86250 -14.84798 -14.37375 -14.13417 -13.96482 -13.51088 -13.41937 -13.10856 -12.84396 -12.63050 -12.49046 -12.36260 -11.92310 -11.78392 -11.64453 -11.16619 -11.13714 -11.11851 -11.06315 -10.72141 -10.57716 -10.51643 -9.97854 -9.73162 -9.15028 -9.07471 -8.99177 -8.57734 -8.02787 -6.71010 -6.28177 -4.02201 1.17051 1.66420 3.03663 3.14675 3.22228 3.23304 3.26815 3.47686 4.03792 4.08425 4.23141 4.29056 4.44812 4.63005 4.82644 4.86873 5.05863 5.09258 5.17764 5.22813 5.25228 5.26421 5.45309 5.47424 5.48673 5.51036 5.62032 5.66074 5.73993 5.75710 5.85064 5.87409 5.98013 6.02599 6.11447 6.25353 6.46596 6.59105 6.64329 6.93884 7.19454 7.52775 7.57515 8.31461 8.32744 9.17413 10.78566 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.023577 B = 0.003023 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.331575 B = 9259.492587 C = 9617.666045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.095 4.095 3 C -0.137 4.137 4 C -0.130 4.130 5 C -0.154 4.154 6 C 0.132 3.868 7 H 0.115 0.885 8 N -0.721 5.721 9 C 0.564 3.436 10 O -0.536 6.536 11 C -0.155 4.155 12 C -0.090 4.090 13 C -0.141 4.141 14 C -0.054 4.054 15 C -0.106 4.106 16 S -0.035 6.035 17 C -0.520 4.520 18 H 0.075 0.925 19 C 0.074 3.926 20 N -0.871 5.871 21 Si 0.921 3.079 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.273 1.273 25 C -0.019 4.019 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.399 0.601 37 H 0.115 0.885 38 H 0.123 0.877 39 H 0.131 0.869 40 H 0.270 0.730 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.492 9.997 -21.315 24.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.096 4.096 3 C -0.194 4.194 4 C -0.168 4.168 5 C -0.193 4.193 6 C 0.027 3.973 7 H 0.132 0.868 8 N -0.374 5.374 9 C 0.352 3.648 10 O -0.413 6.413 11 C -0.160 4.160 12 C -0.109 4.109 13 C -0.161 4.161 14 C -0.075 4.075 15 C -0.217 4.217 16 S 0.200 5.800 17 C -0.668 4.668 18 H 0.093 0.907 19 C -0.136 4.136 20 N -0.506 5.506 21 Si 0.747 3.253 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.199 1.199 25 C -0.041 4.041 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.236 0.764 37 H 0.133 0.867 38 H 0.141 0.859 39 H 0.149 0.851 40 H 0.080 0.920 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.101 10.486 -20.107 23.045 hybrid contribution -1.163 -1.844 -1.146 2.463 sum -5.264 8.642 -21.253 23.539 Atomic orbital electron populations 1.21609 0.93098 1.02317 1.02202 1.22297 0.96045 0.95103 0.96117 1.21744 1.00638 0.95027 1.02016 1.22932 1.01288 0.96087 0.96475 1.23398 1.02869 0.97176 0.95858 1.22623 0.95719 0.95502 0.83445 0.86761 1.45944 1.10598 1.70706 1.10168 1.18458 0.87888 0.75840 0.82570 1.90758 1.15132 1.51210 1.84177 1.19877 0.93427 1.08133 0.94557 1.21117 0.92388 0.99137 0.98295 1.21064 0.99462 1.02308 0.93239 1.22004 0.94910 0.93549 0.97087 1.22848 0.95553 1.01442 1.01852 1.83614 1.78683 1.07329 1.10390 1.22795 1.52084 0.89571 1.02334 0.90681 1.24995 0.94454 0.99782 0.94321 1.69980 1.41584 1.36125 1.02916 0.86177 0.78854 0.82587 0.77699 1.19770 1.20733 1.19853 1.21916 1.00875 0.91558 0.89757 0.92102 0.91739 0.92022 0.92268 0.92403 0.92306 0.89763 0.90886 0.90871 0.89796 0.76426 0.86699 0.85880 0.85073 0.92001 0.84300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.85 8.07 37.16 0.30 -0.55 16 2 C -0.09 -0.72 1.37 -153.61 -0.21 -0.93 16 3 C -0.14 -0.99 9.20 37.16 0.34 -0.65 16 4 C -0.13 -0.92 7.20 -25.83 -0.19 -1.11 16 5 C -0.15 -1.40 7.53 -25.92 -0.20 -1.60 16 6 C 0.13 1.38 3.67 -67.12 -0.25 1.14 16 7 H 0.11 1.41 7.46 -51.93 -0.39 1.02 16 8 N -0.72 -8.49 5.19 -53.96 -0.28 -8.77 16 9 C 0.56 9.17 7.77 -12.32 -0.10 9.08 16 10 O -0.54 -10.64 15.96 5.32 0.08 -10.56 16 11 C -0.16 -2.63 5.87 -105.00 -0.62 -3.24 16 12 C -0.09 -1.25 9.54 -39.12 -0.37 -1.62 16 13 C -0.14 -2.05 10.02 -39.68 -0.40 -2.45 16 14 C -0.05 -0.99 9.79 -39.25 -0.38 -1.38 16 15 C -0.11 -2.29 5.45 -38.99 -0.21 -2.50 16 16 S -0.03 -0.90 21.41 -107.50 -2.30 -3.20 16 17 C -0.52 -14.75 9.46 30.91 0.29 -14.46 16 18 H 0.08 2.11 7.79 -52.49 -0.41 1.70 16 19 C 0.07 2.07 5.49 -17.46 -0.10 1.97 16 20 N -0.87 -25.53 13.22 55.49 0.73 -24.79 16 21 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 22 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 C -0.02 -0.40 9.34 -38.92 -0.36 -0.76 16 26 H 0.06 0.38 7.07 -51.93 -0.37 0.01 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.37 7.35 -51.93 -0.38 -0.01 16 29 H 0.06 0.42 7.95 -51.93 -0.41 0.00 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.56 7.96 -51.92 -0.41 0.15 16 33 H 0.07 0.45 8.11 -51.93 -0.42 0.03 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.73 7.66 -51.93 -0.40 0.34 16 36 H 0.40 3.71 4.64 -40.82 -0.19 3.52 16 37 H 0.12 1.12 6.40 -52.48 -0.34 0.79 16 38 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 39 H 0.13 2.33 8.06 -52.48 -0.42 1.90 16 40 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.14 3.03 7.65 -52.49 -0.40 2.62 16 LS Contribution 353.47 15.07 5.33 5.33 Total: -1.00 -32.36 353.47 -9.69 -42.05 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -5.79 Total: 2.56 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: -2.44 Total: -19.06 kcal Atomic # 7 Polarization: -34.02 SS G_CDS: 0.45 Total: -33.57 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.08 Total: -10.56 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -0.90 SS G_CDS: -2.30 Total: -3.20 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.36 -9.69 -42.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345848594.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.597 kcal (2) G-P(sol) polarization free energy of solvation -32.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds