Wall clock time and date at job start Tue Mar 31 2020 08:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 112.90714 * 2 1 4 4 C 1.53946 * 113.61478 * 228.66901 * 2 1 3 5 5 C 1.53783 * 87.11272 * 270.84376 * 4 2 1 6 6 C 1.53774 * 87.08171 * 334.63946 * 5 4 2 7 7 H 1.09005 * 113.61642 * 270.80092 * 6 5 4 8 8 N 1.46493 * 113.61899 * 139.98104 * 6 5 4 9 9 C 1.34776 * 120.00245 * 105.85732 * 8 6 5 10 10 O 1.21547 * 120.00171 * 0.02562 * 9 8 6 11 11 C 1.47867 * 120.00124 * 180.02562 * 9 8 6 12 12 C 1.39674 * 120.09995 * 0.27926 * 11 9 8 13 13 C 1.38039 * 120.03866 * 180.23179 * 12 11 9 14 14 C 1.38179 * 120.24009 * 359.48725 * 13 12 11 15 15 C 1.39177 * 120.20680 * 0.26303 * 14 13 12 16 16 S 1.76197 * 120.02454 * 179.97438 * 15 14 13 17 17 C 1.76204 * 100.00117 * 85.48525 * 16 15 14 18 18 H 1.08000 * 119.99435 * 5.11288 * 17 16 15 19 19 C 1.38722 * 120.00061 * 185.11857 * 17 16 15 20 20 N 1.31627 * 120.00078 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00215 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46952 * 59.99593 * 21 19 17 23 23 H 1.48497 * 109.47677 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47164 * 300.00137 * 21 19 17 25 25 C 1.38881 * 119.95454 * 359.97438 * 15 14 13 26 26 H 1.08998 * 109.47053 * 288.75282 * 1 2 3 27 27 H 1.09001 * 109.46726 * 48.75368 * 1 2 3 28 28 H 1.08998 * 109.47236 * 168.75143 * 1 2 3 29 29 H 1.09003 * 109.46781 * 191.24851 * 3 2 1 30 30 H 1.08994 * 109.47082 * 311.24552 * 3 2 1 31 31 H 1.08997 * 109.47329 * 71.25131 * 3 2 1 32 32 H 1.09010 * 113.53838 * 156.29191 * 4 2 1 33 33 H 1.09004 * 113.74374 * 25.42759 * 4 2 1 34 34 H 1.09002 * 113.61311 * 220.08511 * 5 4 2 35 35 H 1.08998 * 113.60934 * 89.18872 * 5 4 2 36 36 H 0.97004 * 120.00049 * 285.86820 * 8 6 5 37 37 H 1.08005 * 119.98473 * 359.97438 * 12 11 9 38 38 H 1.08004 * 119.88106 * 179.77244 * 13 12 11 39 39 H 1.08003 * 119.89824 * 180.27576 * 14 13 12 40 40 H 0.97000 * 119.99781 * 179.97438 * 20 19 17 41 41 H 1.07999 * 120.11865 * 179.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1467 -0.9315 -1.0592 5 6 2.0949 -2.0438 0.0015 6 6 2.1459 -0.9290 1.0595 7 1 3.1585 -0.6489 1.3502 8 7 1.2703 -1.1702 2.2089 9 6 1.7982 -1.5417 3.3920 10 8 3.0009 -1.6762 3.5055 11 6 0.9143 -1.7857 4.5521 12 6 -0.4685 -1.6375 4.4225 13 6 -1.2921 -1.8609 5.5075 14 6 -0.7548 -2.2419 6.7222 15 6 0.6212 -2.3976 6.8613 16 16 1.3012 -2.8830 8.4126 17 6 1.1520 -4.6335 8.2779 18 1 0.8030 -5.0763 7.3568 19 6 1.4825 -5.4427 9.3551 20 7 1.9072 -4.9029 10.4779 21 14 1.3236 -7.2985 9.2126 22 1 2.1968 -7.7872 8.1153 23 1 1.7361 -7.9304 10.4916 24 1 -0.0878 -7.6532 8.9172 25 6 1.4580 -2.1702 5.7764 26 1 -0.3633 0.3304 0.9731 27 1 -0.3633 0.6776 -0.7727 28 1 -0.3633 -1.0079 -0.2005 29 1 3.1954 1.3516 -0.2005 30 1 1.6429 2.0077 -0.7726 31 1 1.9627 1.8726 0.9731 32 1 3.1595 -0.6511 -1.3488 33 1 1.4969 -1.1138 -1.9152 34 1 2.9746 -2.6875 0.0025 35 1 1.1597 -2.6036 0.0018 36 1 0.3105 -1.0627 2.1184 37 1 -0.8933 -1.3438 3.4739 38 1 -2.3607 -1.7420 5.4054 39 1 -1.4047 -2.4196 7.5663 40 1 2.1380 -5.4688 11.2312 41 1 2.5262 -2.2899 5.8815 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345848594.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:14 Heat of formation + Delta-G solvation = -24.760542 kcal Electronic energy + Delta-G solvation = -21880.898347 eV Core-core repulsion = 18658.050846 eV Total energy + Delta-G solvation = -3222.847501 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.69606 -40.29759 -38.90444 -34.86300 -34.66007 -32.19974 -31.89849 -31.45075 -28.37824 -27.75658 -26.55882 -24.39294 -23.61178 -23.30222 -21.61256 -20.22518 -19.61718 -18.59587 -17.62956 -17.06096 -16.93788 -16.67243 -16.19371 -15.89447 -15.60157 -15.45996 -14.90210 -14.85461 -14.62549 -14.11646 -13.88271 -13.80503 -13.25243 -13.15646 -13.12874 -13.02117 -12.96352 -12.71973 -12.64710 -12.40921 -12.35771 -11.77850 -11.76379 -11.28884 -11.22588 -11.21708 -11.03762 -10.74792 -10.15939 -9.87308 -9.70625 -8.82477 -8.39669 -6.20329 -0.20065 0.23514 1.29142 1.38553 1.44844 1.63315 1.77973 2.10038 2.24313 2.78307 2.93191 3.37937 3.41002 3.58783 3.67517 3.81622 3.91785 3.92607 4.00484 4.28377 4.33704 4.45515 4.53436 4.61185 4.66210 4.73468 4.80909 4.90554 4.91135 5.00367 5.01077 5.11705 5.16203 5.20048 5.23067 5.30233 5.37338 5.39689 5.43189 5.49300 5.61670 5.84658 6.14902 6.47203 7.00272 7.13669 8.67394 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.023577 B = 0.003023 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.331575 B = 9259.492587 C = 9617.666045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.082 4.082 3 C -0.138 4.138 4 C -0.119 4.119 5 C -0.155 4.155 6 C 0.113 3.887 7 H 0.087 0.913 8 N -0.696 5.696 9 C 0.561 3.439 10 O -0.584 6.584 11 C -0.157 4.157 12 C -0.063 4.063 13 C -0.120 4.120 14 C -0.064 4.064 15 C -0.127 4.127 16 S -0.098 6.098 17 C -0.537 4.537 18 H 0.067 0.933 19 C 0.020 3.980 20 N -0.907 5.907 21 Si 0.993 3.007 22 H -0.270 1.270 23 H -0.271 1.271 24 H -0.260 1.260 25 C -0.045 4.045 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.048 0.952 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.058 0.942 35 H 0.094 0.906 36 H 0.414 0.586 37 H 0.172 0.828 38 H 0.176 0.824 39 H 0.131 0.869 40 H 0.274 0.726 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.806 10.179 -24.789 28.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.083 4.083 3 C -0.196 4.196 4 C -0.157 4.157 5 C -0.193 4.193 6 C 0.009 3.991 7 H 0.106 0.894 8 N -0.348 5.348 9 C 0.349 3.651 10 O -0.465 6.465 11 C -0.162 4.162 12 C -0.082 4.082 13 C -0.139 4.139 14 C -0.085 4.085 15 C -0.239 4.239 16 S 0.137 5.863 17 C -0.684 4.684 18 H 0.086 0.914 19 C -0.185 4.185 20 N -0.543 5.543 21 Si 0.814 3.186 22 H -0.195 1.195 23 H -0.196 1.196 24 H -0.184 1.184 25 C -0.067 4.067 26 H 0.083 0.917 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.111 0.889 34 H 0.077 0.923 35 H 0.112 0.888 36 H 0.254 0.746 37 H 0.189 0.811 38 H 0.193 0.807 39 H 0.149 0.851 40 H 0.083 0.917 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.454 10.698 -23.621 26.980 hybrid contribution -0.147 -1.766 -0.229 1.786 sum -7.601 8.932 -23.849 26.577 Atomic orbital electron populations 1.21677 0.91407 1.03347 1.03040 1.22288 0.97247 0.94609 0.94164 1.21765 1.00712 0.95058 1.02032 1.22906 1.01907 0.94477 0.96425 1.23418 1.02753 0.97168 0.95998 1.22872 0.94837 0.97964 0.83464 0.89442 1.45784 1.11575 1.68539 1.08948 1.18464 0.87131 0.75871 0.83616 1.90741 1.17157 1.53623 1.84995 1.19990 0.95309 1.07677 0.93258 1.21685 0.90389 0.95687 1.00409 1.21549 1.02007 0.99268 0.91071 1.22085 0.93127 0.94051 0.99202 1.22476 0.97258 1.04698 0.99421 1.83519 1.80496 1.07274 1.15015 1.23023 1.52301 0.90759 1.02347 0.91447 1.26013 0.93722 1.05033 0.93755 1.70106 1.42406 1.38059 1.03707 0.85088 0.79392 0.76064 0.78033 1.19507 1.19554 1.18450 1.21621 0.99369 0.94159 0.91556 0.91735 0.90235 0.91174 0.92663 0.90651 0.93326 0.89610 0.88923 0.92348 0.88771 0.74559 0.81095 0.80665 0.85071 0.91662 0.87704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 8.07 71.98 0.58 -0.53 16 2 C -0.08 -1.01 1.37 -51.60 -0.07 -1.08 16 3 C -0.14 -1.70 9.20 71.98 0.66 -1.03 16 4 C -0.12 -1.35 7.20 31.18 0.22 -1.13 16 5 C -0.15 -2.53 7.53 31.12 0.23 -2.29 16 6 C 0.11 2.22 3.67 45.52 0.17 2.39 16 7 H 0.09 2.23 7.46 -2.38 -0.02 2.21 16 8 N -0.70 -14.88 5.19 -442.90 -2.30 -17.18 16 9 C 0.56 18.12 7.77 86.79 0.67 18.80 16 10 O -0.58 -24.44 15.96 -3.86 -0.06 -24.50 16 11 C -0.16 -5.21 5.87 -20.11 -0.12 -5.32 16 12 C -0.06 -1.47 9.54 22.57 0.22 -1.26 16 13 C -0.12 -2.95 10.02 22.21 0.22 -2.73 16 14 C -0.06 -2.27 9.79 22.48 0.22 -2.05 16 15 C -0.13 -5.72 5.45 22.65 0.12 -5.60 16 16 S -0.10 -5.43 21.41 -56.49 -1.21 -6.64 16 17 C -0.54 -31.82 9.46 67.94 0.64 -31.17 16 18 H 0.07 3.94 7.79 -2.91 -0.02 3.92 16 19 C 0.02 1.16 5.49 84.84 0.47 1.62 16 20 N -0.91 -55.02 13.22 21.63 0.29 -54.74 16 21 Si 0.99 44.70 29.55 68.60 2.03 46.73 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 24 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 25 C -0.05 -1.94 9.34 22.70 0.21 -1.73 16 26 H 0.06 0.48 7.07 -2.39 -0.02 0.47 16 27 H 0.08 0.46 8.14 -2.39 -0.02 0.45 16 28 H 0.07 0.48 7.35 -2.39 -0.02 0.46 16 29 H 0.05 0.71 7.95 -2.39 -0.02 0.69 16 30 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.09 0.96 7.96 -2.38 -0.02 0.94 16 33 H 0.09 0.75 8.11 -2.38 -0.02 0.73 16 34 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.09 1.35 7.66 -2.39 -0.02 1.34 16 36 H 0.41 5.90 4.64 -92.71 -0.43 5.47 16 37 H 0.17 2.09 6.40 -2.91 -0.02 2.08 16 38 H 0.18 2.64 8.06 -2.91 -0.02 2.62 16 39 H 0.13 4.61 8.06 -2.91 -0.02 4.58 16 40 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 41 H 0.10 5.09 7.65 -2.91 -0.02 5.07 16 Total: -1.00 -77.63 353.47 3.80 -73.83 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.60 Total: 15.61 kcal Atomic # 6 Polarization: -37.57 SS G_CDS: 4.46 Total: -33.11 kcal Atomic # 7 Polarization: -69.90 SS G_CDS: -2.01 Total: -71.91 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -0.06 Total: -24.50 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 16 Polarization: -5.43 SS G_CDS: -1.21 Total: -6.64 kcal Total: -77.63 3.80 -73.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345848594.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.065 kcal (2) G-P(sol) polarization free energy of solvation -77.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds