Wall clock time and date at job start Tue Mar 31 2020 08:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38260 * 120.00097 * 2 1 4 4 C 1.38212 * 120.00297 * 179.97438 * 3 2 1 5 5 C 1.38258 * 119.99876 * 0.02562 * 4 3 2 6 6 C 1.38213 * 119.99970 * 359.76817 * 5 4 3 7 7 C 1.38207 * 119.99907 * 180.02562 * 2 1 3 8 8 C 1.50700 * 120.00454 * 359.97438 * 7 2 1 9 9 N 1.46493 * 109.47521 * 185.53591 * 8 7 2 10 10 C 1.34777 * 120.00134 * 85.33538 * 9 8 7 11 11 O 1.21276 * 119.99958 * 5.21872 * 10 9 8 12 12 C 1.50706 * 120.00035 * 185.21797 * 10 9 8 13 13 S 1.80997 * 109.46756 * 175.03217 * 12 10 9 14 14 C 1.76207 * 99.99646 * 180.02562 * 13 12 10 15 15 H 1.08004 * 119.99917 * 359.97438 * 14 13 12 16 16 C 1.38797 * 119.99675 * 180.02562 * 14 13 12 17 17 N 1.31628 * 120.00656 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99752 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47101 * 89.99552 * 18 16 14 20 20 H 1.48497 * 109.46994 * 210.00116 * 18 16 14 21 21 H 1.48508 * 109.46935 * 329.99785 * 18 16 14 22 22 C 1.46505 * 119.99812 * 265.34107 * 9 8 7 23 23 C 1.52992 * 117.50281 * 13.68965 * 22 9 8 24 24 C 1.53001 * 117.49894 * 305.02763 * 22 9 8 25 25 H 1.08998 * 109.47100 * 274.73482 * 1 2 3 26 26 H 1.09007 * 109.47141 * 34.73425 * 1 2 3 27 27 H 1.08998 * 109.47179 * 154.73650 * 1 2 3 28 28 H 1.08001 * 119.99976 * 0.02562 * 3 2 1 29 29 H 1.07996 * 120.00310 * 180.02562 * 4 3 2 30 30 H 1.07999 * 120.00383 * 179.97438 * 5 4 3 31 31 H 1.07996 * 120.00837 * 180.25131 * 6 5 4 32 32 H 1.09004 * 109.47082 * 65.53076 * 8 7 2 33 33 H 1.09005 * 109.46774 * 305.53724 * 8 7 2 34 34 H 1.09001 * 109.46748 * 295.03147 * 12 10 9 35 35 H 1.08998 * 109.47132 * 55.02903 * 12 10 9 36 36 H 0.96997 * 120.00190 * 180.02562 * 17 16 14 37 37 H 1.09004 * 115.54704 * 159.36599 * 22 9 8 38 38 H 1.09010 * 117.49884 * 0.02562 * 23 22 9 39 39 H 1.08994 * 117.50542 * 145.02216 * 23 22 9 40 40 H 1.08995 * 117.49957 * 214.98307 * 24 22 9 41 41 H 1.09000 * 117.49721 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.2718 0.0001 0.0005 6 6 3.5807 -1.1969 0.0048 7 6 2.1980 -1.1969 -0.0005 8 6 1.4446 -2.5021 -0.0005 9 7 2.3910 -3.6123 0.1321 10 6 2.8017 -4.0055 1.3541 11 8 2.3173 -3.5048 2.3468 12 6 3.8628 -5.0674 1.4869 13 16 4.2992 -5.2691 3.2319 14 6 5.5215 -6.5312 3.0976 15 1 5.7812 -6.9304 2.1282 16 6 6.1498 -7.0128 4.2376 17 7 5.8330 -6.5266 5.4191 18 14 7.4451 -8.3513 4.0953 19 1 8.7825 -7.7294 3.9222 20 1 7.4396 -9.1785 5.3285 21 1 7.1428 -9.2099 2.9220 22 6 2.8912 -4.2953 -1.0637 23 6 2.6538 -3.6185 -2.4151 24 6 1.8569 -4.8688 -2.0343 25 1 -0.3633 0.0848 1.0241 26 1 -0.3634 0.8446 -0.5856 27 1 -0.3633 -0.9294 -0.4386 28 1 1.6583 2.1327 0.0004 29 1 4.1205 2.1327 0.0010 30 1 5.3518 0.0000 0.0005 31 1 4.1206 -2.1322 0.0089 32 1 0.8939 -2.6037 -0.9357 33 1 0.7460 -2.5182 0.8360 34 1 3.4831 -6.0113 1.0958 35 1 4.7470 -4.7700 0.9232 36 1 6.2724 -6.8630 6.2157 37 1 3.8213 -4.8488 -0.9344 38 1 2.1257 -2.6649 -2.4146 39 1 3.4274 -3.7270 -3.1752 40 1 2.1067 -5.7993 -2.5440 41 1 0.8043 -4.7384 -1.7830 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346330168.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:14 Heat of formation + Delta-G solvation = 18.630942 kcal Electronic energy + Delta-G solvation = -22451.374979 eV Core-core repulsion = 19230.409074 eV Total energy + Delta-G solvation = -3220.965905 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.39965 -38.84311 -37.26432 -33.80201 -32.87350 -32.42733 -31.31323 -29.33246 -27.08747 -25.99017 -25.39303 -22.64140 -22.43541 -21.93671 -20.95707 -18.94488 -17.87875 -16.83867 -16.62112 -16.37309 -15.24197 -14.89668 -14.80526 -14.70130 -14.59642 -14.11064 -13.92387 -13.62966 -13.31572 -13.05313 -12.70465 -12.50092 -12.40891 -12.22864 -12.01184 -11.81931 -11.62487 -11.30594 -11.06570 -11.02774 -10.98471 -10.89445 -10.76509 -10.71770 -9.81030 -9.38603 -9.06510 -8.73620 -8.54600 -8.43066 -8.22368 -6.49927 -6.21439 -3.92087 1.36369 1.44559 2.81932 2.95046 3.22204 3.24354 3.29873 3.55101 3.74747 3.78416 4.20177 4.55018 4.70086 4.72551 4.81323 4.82190 4.87544 4.96863 5.11127 5.13796 5.19089 5.29984 5.43819 5.48374 5.50906 5.54381 5.61285 5.68382 5.71905 5.78018 5.82066 5.90039 5.92442 6.06680 6.10627 6.13810 6.42058 6.51289 6.57759 6.77870 7.04845 7.50047 7.59571 8.35151 8.52082 9.23821 10.85969 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.017773 B = 0.003737 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.088793 B = 7490.507401 C = 8074.811248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.084 4.084 3 C -0.123 4.123 4 C -0.122 4.122 5 C -0.123 4.123 6 C -0.094 4.094 7 C -0.096 4.096 8 C 0.155 3.845 9 N -0.592 5.592 10 C 0.538 3.462 11 O -0.506 6.506 12 C -0.150 4.150 13 S -0.061 6.061 14 C -0.535 4.535 15 H 0.072 0.928 16 C 0.074 3.926 17 N -0.867 5.867 18 Si 0.918 3.082 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.272 1.272 22 C 0.076 3.924 23 C -0.186 4.186 24 C -0.194 4.194 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.122 0.878 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.268 0.732 37 H 0.136 0.864 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.171 10.993 -17.562 22.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.085 4.085 3 C -0.141 4.141 4 C -0.140 4.140 5 C -0.141 4.141 6 C -0.113 4.113 7 C -0.097 4.097 8 C 0.033 3.967 9 N -0.326 5.326 10 C 0.327 3.673 11 O -0.379 6.379 12 C -0.301 4.301 13 S 0.166 5.834 14 C -0.683 4.683 15 H 0.090 0.910 16 C -0.135 4.135 17 N -0.503 5.503 18 Si 0.744 3.256 19 H -0.203 1.203 20 H -0.207 1.207 21 H -0.197 1.197 22 C -0.029 4.029 23 C -0.224 4.224 24 C -0.233 4.233 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.137 0.863 29 H 0.136 0.864 30 H 0.138 0.862 31 H 0.140 0.860 32 H 0.105 0.895 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.153 0.847 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.813 11.779 -15.845 21.621 hybrid contribution 1.460 -1.468 -1.267 2.427 sum -7.353 10.311 -17.112 21.289 Atomic orbital electron populations 1.20813 0.91388 1.02498 1.02583 1.19626 0.95828 0.92459 1.00548 1.20918 0.94254 0.97137 1.01767 1.21089 0.94296 0.97920 1.00669 1.21146 0.99922 0.92507 1.00539 1.21033 0.93648 0.98334 0.98242 1.20102 0.94352 0.94468 1.00770 1.20256 0.91136 0.82542 1.02793 1.47421 1.46346 1.33564 1.05241 1.20299 0.82531 0.82681 0.81822 1.90713 1.55600 1.55544 1.35999 1.23570 0.98944 0.99334 1.08241 1.85420 1.50515 1.51022 0.96430 1.22853 1.25233 1.24181 0.96041 0.90953 1.24981 0.97037 0.97019 0.94469 1.70015 1.40999 1.41315 0.97930 0.86183 0.80870 0.80702 0.77837 1.20272 1.20749 1.19679 1.21785 0.99029 1.00115 0.82006 1.23373 1.03813 0.97411 0.97824 1.23426 0.98171 0.97878 1.03777 0.90887 0.91600 0.91661 0.86334 0.86376 0.86205 0.85971 0.89458 0.88651 0.89037 0.89441 0.92185 0.84694 0.88268 0.87950 0.87942 0.88588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 9.59 36.01 0.35 -0.70 16 2 C -0.08 -1.00 5.88 -104.62 -0.62 -1.61 16 3 C -0.12 -1.38 9.72 -39.58 -0.38 -1.76 16 4 C -0.12 -1.41 10.05 -39.58 -0.40 -1.80 16 5 C -0.12 -1.59 10.05 -39.58 -0.40 -1.98 16 6 C -0.09 -1.34 9.13 -39.58 -0.36 -1.70 16 7 C -0.10 -1.27 5.71 -104.62 -0.60 -1.87 16 8 C 0.16 1.98 3.64 -5.20 -0.02 1.96 16 9 N -0.59 -8.44 1.67 -167.47 -0.28 -8.72 16 10 C 0.54 10.26 6.92 -10.98 -0.08 10.19 16 11 O -0.51 -11.63 15.50 5.56 0.09 -11.54 16 12 C -0.15 -3.05 4.64 36.01 0.17 -2.89 16 13 S -0.06 -1.65 20.58 -107.50 -2.21 -3.86 16 14 C -0.53 -15.19 9.50 30.94 0.29 -14.89 16 15 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 16 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 17 N -0.87 -26.18 13.22 55.49 0.73 -25.45 16 18 Si 0.92 21.36 29.55 -169.99 -5.02 16.33 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 22 C 0.08 0.86 5.73 -67.93 -0.39 0.47 16 23 C -0.19 -1.65 9.74 -26.70 -0.26 -1.91 16 24 C -0.19 -1.76 10.02 -26.69 -0.27 -2.03 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 27 H 0.06 0.53 6.63 -51.93 -0.34 0.18 16 28 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 29 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 30 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 31 H 0.12 1.83 6.23 -52.49 -0.33 1.50 16 32 H 0.09 0.87 5.69 -51.93 -0.30 0.58 16 33 H 0.10 1.35 7.35 -51.93 -0.38 0.97 16 34 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 35 H 0.09 1.63 7.55 -51.92 -0.39 1.24 16 36 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.14 1.51 6.59 -51.93 -0.34 1.17 16 38 H 0.10 0.90 6.44 -51.92 -0.33 0.56 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.10 0.87 7.90 -51.93 -0.41 0.46 16 LS Contribution 353.01 15.07 5.32 5.32 Total: -1.00 -33.98 353.01 -10.18 -44.17 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -5.75 Total: 2.28 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: -3.06 Total: -18.52 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.45 Total: -34.17 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.98 -10.18 -44.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346330168.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.797 kcal (2) G-P(sol) polarization free energy of solvation -33.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds