Wall clock time and date at job start Tue Mar 31 2020 08:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38260 * 120.00097 * 2 1 4 4 C 1.38212 * 120.00297 * 179.97438 * 3 2 1 5 5 C 1.38258 * 119.99876 * 0.02562 * 4 3 2 6 6 C 1.38213 * 119.99970 * 359.76817 * 5 4 3 7 7 C 1.38207 * 119.99907 * 180.02562 * 2 1 3 8 8 C 1.50700 * 120.00454 * 359.97438 * 7 2 1 9 9 N 1.46493 * 109.47521 * 185.53591 * 8 7 2 10 10 C 1.34777 * 120.00134 * 85.33538 * 9 8 7 11 11 O 1.21276 * 119.99958 * 5.21872 * 10 9 8 12 12 C 1.50706 * 120.00035 * 185.21797 * 10 9 8 13 13 S 1.80997 * 109.46756 * 175.03217 * 12 10 9 14 14 C 1.76207 * 99.99646 * 180.02562 * 13 12 10 15 15 H 1.08004 * 119.99917 * 359.97438 * 14 13 12 16 16 C 1.38797 * 119.99675 * 180.02562 * 14 13 12 17 17 N 1.31628 * 120.00656 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99752 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47101 * 89.99552 * 18 16 14 20 20 H 1.48497 * 109.46994 * 210.00116 * 18 16 14 21 21 H 1.48508 * 109.46935 * 329.99785 * 18 16 14 22 22 C 1.46505 * 119.99812 * 265.34107 * 9 8 7 23 23 C 1.52992 * 117.50281 * 13.68965 * 22 9 8 24 24 C 1.53001 * 117.49894 * 305.02763 * 22 9 8 25 25 H 1.08998 * 109.47100 * 274.73482 * 1 2 3 26 26 H 1.09007 * 109.47141 * 34.73425 * 1 2 3 27 27 H 1.08998 * 109.47179 * 154.73650 * 1 2 3 28 28 H 1.08001 * 119.99976 * 0.02562 * 3 2 1 29 29 H 1.07996 * 120.00310 * 180.02562 * 4 3 2 30 30 H 1.07999 * 120.00383 * 179.97438 * 5 4 3 31 31 H 1.07996 * 120.00837 * 180.25131 * 6 5 4 32 32 H 1.09004 * 109.47082 * 65.53076 * 8 7 2 33 33 H 1.09005 * 109.46774 * 305.53724 * 8 7 2 34 34 H 1.09001 * 109.46748 * 295.03147 * 12 10 9 35 35 H 1.08998 * 109.47132 * 55.02903 * 12 10 9 36 36 H 0.96997 * 120.00190 * 180.02562 * 17 16 14 37 37 H 1.09004 * 115.54704 * 159.36599 * 22 9 8 38 38 H 1.09010 * 117.49884 * 0.02562 * 23 22 9 39 39 H 1.08994 * 117.50542 * 145.02216 * 23 22 9 40 40 H 1.08995 * 117.49957 * 214.98307 * 24 22 9 41 41 H 1.09000 * 117.49721 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.2718 0.0001 0.0005 6 6 3.5807 -1.1969 0.0048 7 6 2.1980 -1.1969 -0.0005 8 6 1.4446 -2.5021 -0.0005 9 7 2.3910 -3.6123 0.1321 10 6 2.8017 -4.0055 1.3541 11 8 2.3173 -3.5048 2.3468 12 6 3.8628 -5.0674 1.4869 13 16 4.2992 -5.2691 3.2319 14 6 5.5215 -6.5312 3.0976 15 1 5.7812 -6.9304 2.1282 16 6 6.1498 -7.0128 4.2376 17 7 5.8330 -6.5266 5.4191 18 14 7.4451 -8.3513 4.0953 19 1 8.7825 -7.7294 3.9222 20 1 7.4396 -9.1785 5.3285 21 1 7.1428 -9.2099 2.9220 22 6 2.8912 -4.2953 -1.0637 23 6 2.6538 -3.6185 -2.4151 24 6 1.8569 -4.8688 -2.0343 25 1 -0.3633 0.0848 1.0241 26 1 -0.3634 0.8446 -0.5856 27 1 -0.3633 -0.9294 -0.4386 28 1 1.6583 2.1327 0.0004 29 1 4.1205 2.1327 0.0010 30 1 5.3518 0.0000 0.0005 31 1 4.1206 -2.1322 0.0089 32 1 0.8939 -2.6037 -0.9357 33 1 0.7460 -2.5182 0.8360 34 1 3.4831 -6.0113 1.0958 35 1 4.7470 -4.7700 0.9232 36 1 6.2724 -6.8630 6.2157 37 1 3.8213 -4.8488 -0.9344 38 1 2.1257 -2.6649 -2.4146 39 1 3.4274 -3.7270 -3.1752 40 1 2.1067 -5.7993 -2.5440 41 1 0.8043 -4.7384 -1.7830 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346330168.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:13 Heat of formation + Delta-G solvation = 0.403037 kcal Electronic energy + Delta-G solvation = -22452.165400 eV Core-core repulsion = 19230.409074 eV Total energy + Delta-G solvation = -3221.756326 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.54965 -39.93468 -38.39642 -34.82238 -34.58944 -33.81784 -32.49335 -30.70014 -28.05840 -27.66026 -26.89149 -23.59258 -23.31126 -22.92000 -21.90438 -20.33934 -19.51758 -18.33690 -17.64346 -17.53163 -16.88862 -16.40849 -16.14917 -15.85918 -15.62849 -15.43495 -15.16589 -14.79066 -14.48346 -14.41064 -13.94705 -13.53636 -13.47312 -13.34512 -13.14103 -13.05894 -12.89936 -12.75367 -12.60336 -12.35867 -12.30321 -11.90567 -11.78896 -11.75334 -11.57256 -11.14909 -10.86946 -10.28183 -9.69587 -9.55393 -9.46120 -8.68330 -8.35203 -6.13799 0.42418 0.48992 1.22420 1.41907 1.42793 1.50155 1.55491 1.97958 2.26492 2.82770 2.93355 2.99046 3.21078 3.61025 3.75841 3.80328 3.92084 4.01249 4.04035 4.08680 4.19063 4.25039 4.28245 4.42269 4.46103 4.50738 4.66556 4.79195 4.82297 4.84911 4.86997 4.94697 5.05875 5.15547 5.23593 5.25998 5.39757 5.40759 5.59851 5.63109 5.76244 6.13131 6.18838 6.23671 7.05875 7.09018 8.74116 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.017773 B = 0.003737 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.088793 B = 7490.507401 C = 8074.811248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.091 4.091 3 C -0.126 4.126 4 C -0.125 4.125 5 C -0.140 4.140 6 C -0.117 4.117 7 C -0.111 4.111 8 C 0.158 3.842 9 N -0.575 5.575 10 C 0.539 3.461 11 O -0.557 6.557 12 C -0.122 4.122 13 S -0.150 6.150 14 C -0.546 4.546 15 H 0.082 0.918 16 C 0.015 3.985 17 N -0.912 5.912 18 Si 0.998 3.002 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.257 1.257 22 C 0.039 3.961 23 C -0.165 4.165 24 C -0.177 4.177 25 H 0.069 0.931 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.146 0.854 29 H 0.142 0.858 30 H 0.126 0.874 31 H 0.105 0.895 32 H 0.120 0.880 33 H 0.078 0.922 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.271 0.729 37 H 0.134 0.866 38 H 0.100 0.900 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.330 11.109 -20.451 24.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.091 4.091 3 C -0.144 4.144 4 C -0.142 4.142 5 C -0.158 4.158 6 C -0.136 4.136 7 C -0.112 4.112 8 C 0.036 3.964 9 N -0.306 5.306 10 C 0.327 3.673 11 O -0.434 6.434 12 C -0.273 4.273 13 S 0.077 5.923 14 C -0.693 4.693 15 H 0.101 0.899 16 C -0.190 4.190 17 N -0.548 5.548 18 Si 0.820 3.180 19 H -0.193 1.193 20 H -0.203 1.203 21 H -0.181 1.181 22 C -0.065 4.065 23 C -0.203 4.203 24 C -0.216 4.216 25 H 0.088 0.912 26 H 0.106 0.894 27 H 0.092 0.908 28 H 0.164 0.836 29 H 0.160 0.840 30 H 0.144 0.856 31 H 0.123 0.877 32 H 0.137 0.863 33 H 0.096 0.904 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.080 0.920 37 H 0.152 0.848 38 H 0.118 0.882 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.983 11.900 -18.808 24.001 hybrid contribution 1.444 -1.397 -0.494 2.069 sum -7.539 10.503 -19.302 23.232 Atomic orbital electron populations 1.20868 0.89407 1.04008 1.02880 1.19994 0.97409 0.92110 0.99636 1.21313 0.94352 0.98084 1.00606 1.21420 0.94831 0.98313 0.99669 1.21347 1.00542 0.92820 1.01102 1.21037 0.94287 0.98229 1.00007 1.20197 0.94143 0.95207 1.01672 1.20376 0.90550 0.81915 1.03587 1.47260 1.45439 1.33328 1.04605 1.20033 0.82185 0.82271 0.82838 1.90688 1.57355 1.57346 1.38043 1.23363 1.00276 1.00878 1.02824 1.85590 1.51359 1.51748 1.03595 1.23185 1.25258 1.24144 0.96749 0.89948 1.26120 0.99421 0.99616 0.93848 1.70184 1.42583 1.43105 0.98928 0.84960 0.77512 0.77224 0.78328 1.19276 1.20277 1.18103 1.22070 1.00307 1.02246 0.81869 1.23422 1.03738 0.97348 0.95765 1.23506 0.97669 0.98788 1.01619 0.91221 0.89353 0.90822 0.83610 0.83979 0.85553 0.87660 0.86268 0.90380 0.87522 0.87794 0.91987 0.84841 0.88160 0.86214 0.86285 0.88291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.84 9.59 71.24 0.68 -1.16 16 2 C -0.09 -2.02 5.88 -19.87 -0.12 -2.14 16 3 C -0.13 -2.57 9.72 22.27 0.22 -2.35 16 4 C -0.12 -2.69 10.05 22.27 0.22 -2.47 16 5 C -0.14 -3.59 10.05 22.27 0.22 -3.37 16 6 C -0.12 -3.37 9.13 22.27 0.20 -3.17 16 7 C -0.11 -2.91 5.71 -19.86 -0.11 -3.02 16 8 C 0.16 3.92 3.64 85.63 0.31 4.23 16 9 N -0.58 -16.27 1.67 -802.14 -1.34 -17.61 16 10 C 0.54 21.13 6.92 87.66 0.61 21.74 16 11 O -0.56 -26.92 15.50 -3.02 -0.05 -26.97 16 12 C -0.12 -5.07 4.64 71.24 0.33 -4.74 16 13 S -0.15 -8.51 20.58 -56.49 -1.16 -9.67 16 14 C -0.55 -31.46 9.50 67.95 0.65 -30.82 16 15 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 16 C 0.01 0.84 5.49 84.86 0.47 1.31 16 17 N -0.91 -56.51 13.22 21.65 0.29 -56.22 16 18 Si 1.00 43.78 29.55 68.60 2.03 45.81 16 19 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 20 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 22 C 0.04 0.82 5.73 44.99 0.26 1.08 16 23 C -0.17 -2.46 9.74 30.62 0.30 -2.16 16 24 C -0.18 -2.71 10.02 30.62 0.31 -2.40 16 25 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.09 1.01 8.12 -2.38 -0.02 0.99 16 27 H 0.07 1.03 6.63 -2.39 -0.02 1.02 16 28 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 29 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 30 H 0.13 2.91 8.06 -2.91 -0.02 2.88 16 31 H 0.11 3.28 6.23 -2.91 -0.02 3.26 16 32 H 0.12 2.13 5.69 -2.38 -0.01 2.12 16 33 H 0.08 2.24 7.35 -2.38 -0.02 2.23 16 34 H 0.11 4.05 8.14 -2.39 -0.02 4.03 16 35 H 0.10 3.92 7.55 -2.40 -0.02 3.90 16 36 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 37 H 0.13 2.82 6.59 -2.38 -0.02 2.81 16 38 H 0.10 1.53 6.44 -2.38 -0.02 1.51 16 39 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.10 1.50 7.90 -2.39 -0.02 1.48 16 Total: -1.00 -77.20 353.01 5.33 -71.86 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: 1.03 Total: 22.24 kcal Atomic # 6 Polarization: -33.98 SS G_CDS: 4.54 Total: -29.44 kcal Atomic # 7 Polarization: -72.77 SS G_CDS: -1.06 Total: -73.83 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.05 Total: -26.97 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.16 Total: -9.67 kcal Total: -77.20 5.33 -71.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346330168.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.267 kcal (2) G-P(sol) polarization free energy of solvation -77.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds