Wall clock time and date at job start Tue Mar 31 2020 08:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 115.54884 * 2 1 4 4 N 1.46504 * 109.47243 * 80.42516 * 3 2 1 5 5 C 1.34771 * 120.00265 * 184.63122 * 4 3 2 6 6 O 1.21284 * 119.99631 * 0.02562 * 5 4 3 7 7 C 1.50698 * 120.00208 * 180.02562 * 5 4 3 8 8 S 1.81004 * 109.47325 * 180.02562 * 7 5 4 9 9 C 1.76202 * 100.00034 * 180.02562 * 8 7 5 10 10 H 1.08000 * 119.99543 * 359.97438 * 9 8 7 11 11 C 1.38800 * 119.99756 * 180.02562 * 9 8 7 12 12 N 1.31629 * 119.99974 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99650 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47066 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46878 * 120.00365 * 13 11 9 16 16 H 1.48506 * 109.46976 * 240.00026 * 13 11 9 17 17 C 1.53001 * 117.51738 * 214.30045 * 2 1 3 18 18 C 1.53000 * 117.50068 * 145.66970 * 2 1 3 19 19 H 1.08997 * 117.49880 * 0.02562 * 18 2 1 20 20 C 1.50701 * 117.49871 * 215.02721 * 18 2 1 21 21 C 1.38238 * 119.99760 * 299.72453 * 20 18 2 22 22 C 1.38232 * 119.99615 * 179.78657 * 21 20 18 23 23 C 1.38234 * 120.00257 * 0.46961 * 22 21 20 24 24 C 1.38239 * 119.99616 * 359.76548 * 23 22 21 25 25 C 1.38224 * 120.00256 * 0.02562 * 24 23 22 26 26 H 1.08995 * 109.47174 * 54.70302 * 1 2 3 27 27 H 1.08997 * 109.47209 * 174.70851 * 1 2 3 28 28 H 1.09008 * 109.46840 * 294.70425 * 1 2 3 29 29 H 1.08999 * 109.47275 * 200.42991 * 3 2 1 30 30 H 1.08997 * 109.47187 * 320.42674 * 3 2 1 31 31 H 0.96999 * 119.99435 * 4.63560 * 4 3 2 32 32 H 1.08994 * 109.47418 * 300.00543 * 7 5 4 33 33 H 1.09000 * 109.46810 * 60.00104 * 7 5 4 34 34 H 0.96999 * 119.99754 * 180.02562 * 12 11 9 35 35 H 1.08993 * 117.49890 * 0.02562 * 17 2 1 36 36 H 1.09004 * 117.49722 * 145.02937 * 17 2 1 37 37 H 1.07998 * 120.00265 * 0.02562 * 21 20 18 38 38 H 1.08001 * 120.00097 * 180.25028 * 22 21 20 39 39 H 1.07998 * 120.00261 * 179.78306 * 23 22 21 40 40 H 1.08005 * 119.99485 * 180.02562 * 24 23 22 41 41 H 1.08004 * 120.00374 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 7 2.1932 1.9201 1.3620 5 6 2.6421 3.1702 1.5904 6 8 3.0429 3.8485 0.6684 7 6 2.6461 3.7251 2.9915 8 16 3.3008 5.4125 2.9704 9 6 3.1951 5.8032 4.6852 10 1 2.8089 5.0743 5.3823 11 6 3.6072 7.0482 5.1400 12 7 4.0764 7.9371 4.2901 13 14 3.4944 7.4627 6.9579 14 1 2.9364 6.3016 7.6967 15 1 4.8493 7.7757 7.4791 16 1 2.6085 8.6401 7.1432 17 6 2.2369 -1.1209 -0.7647 18 6 2.2365 -1.1207 0.7654 19 1 1.6113 -1.8583 1.2685 20 6 3.5288 -0.7803 1.4620 21 6 4.6067 -0.3168 0.7311 22 6 5.7906 -0.0003 1.3706 23 6 5.8998 -0.1566 2.7398 24 6 4.8234 -0.6247 3.4700 25 6 3.6381 -0.9371 2.8310 26 1 -0.3633 0.5938 -0.8387 27 1 -0.3633 -1.0232 -0.0948 28 1 -0.3633 0.4295 0.9337 29 1 3.2154 1.2929 -0.3587 30 1 1.6319 2.0498 -0.6547 31 1 1.8724 1.3777 2.0993 32 1 1.6282 3.7355 3.3811 33 1 3.2723 3.1000 3.6281 34 1 4.3647 8.8069 4.6080 35 1 1.6120 -1.8584 -1.2683 36 1 3.1721 -0.8750 -1.2677 37 1 4.5226 -0.1982 -0.3391 38 1 6.6314 0.3656 0.8002 39 1 6.8259 0.0873 3.2390 40 1 4.9086 -0.7464 4.5398 41 1 2.7972 -1.3032 3.4015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355011556.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:04 Heat of formation + Delta-G solvation = 4.836977 kcal Electronic energy + Delta-G solvation = -22363.827457 eV Core-core repulsion = 19142.263401 eV Total energy + Delta-G solvation = -3221.564056 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.41622 -38.79385 -37.66983 -33.78336 -32.39792 -31.33797 -30.96023 -29.60821 -28.29670 -26.09498 -25.35363 -23.97012 -22.47337 -20.84591 -20.14488 -19.41512 -17.80167 -17.13382 -16.14502 -15.71295 -15.67278 -15.23957 -14.85955 -14.77895 -14.38612 -14.13878 -13.90390 -13.46372 -13.32450 -13.10866 -12.94452 -12.70637 -12.59517 -12.53011 -12.04871 -11.74718 -11.55809 -11.06312 -11.05374 -11.01008 -10.98452 -10.74145 -10.55614 -10.29623 -9.76564 -9.26859 -9.04811 -8.94755 -8.71901 -8.53412 -8.18140 -6.45359 -6.18826 -3.88392 1.28057 1.39035 3.02983 3.21553 3.23374 3.26625 3.32017 3.45616 3.79126 4.00198 4.23404 4.28476 4.44605 4.57521 4.70472 4.77922 4.94665 5.03341 5.10306 5.16363 5.23646 5.34556 5.43990 5.46566 5.53598 5.56689 5.62172 5.73420 5.76314 5.80572 5.92595 5.96242 5.98001 5.99002 6.04425 6.20960 6.45552 6.52625 6.54982 6.74506 6.97508 7.62834 7.84968 8.38565 8.73447 9.26672 10.88696 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.016797 B = 0.003787 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.590944 B = 7391.406138 C = 8162.490582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.129 4.129 3 C 0.157 3.843 4 N -0.728 5.728 5 C 0.533 3.467 6 O -0.522 6.522 7 C -0.151 4.151 8 S -0.060 6.060 9 C -0.533 4.533 10 H 0.072 0.928 11 C 0.073 3.927 12 N -0.868 5.868 13 Si 0.917 3.083 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.280 1.280 17 C -0.158 4.158 18 C -0.106 4.106 19 H 0.114 0.886 20 C -0.050 4.050 21 C -0.115 4.115 22 C -0.112 4.112 23 C -0.120 4.120 24 C -0.115 4.115 25 C -0.117 4.117 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.397 0.603 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.267 0.733 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.563 -22.444 -6.478 23.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.130 4.130 3 C 0.033 3.967 4 N -0.382 5.382 5 C 0.319 3.681 6 O -0.396 6.396 7 C -0.301 4.301 8 S 0.166 5.834 9 C -0.682 4.682 10 H 0.090 0.910 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.744 3.256 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.206 1.206 17 C -0.195 4.195 18 C -0.124 4.124 19 H 0.132 0.868 20 C -0.050 4.050 21 C -0.133 4.133 22 C -0.130 4.130 23 C -0.138 4.138 24 C -0.133 4.133 25 C -0.135 4.135 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.230 0.770 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.826 -21.120 -8.059 22.781 hybrid contribution -0.632 -0.742 2.638 2.813 sum -3.458 -21.862 -5.421 22.788 Atomic orbital electron populations 1.21331 0.91236 1.01904 1.02618 1.21871 0.95212 0.90753 1.05124 1.20754 1.00183 0.90955 0.84790 1.45875 1.67378 1.15661 1.09247 1.20237 0.76375 0.80622 0.90887 1.90689 1.45449 1.58275 1.45236 1.23500 1.05175 1.05864 0.95607 1.85372 1.82211 1.04313 1.11476 1.22913 1.49372 1.02930 0.92952 0.90967 1.24981 0.94593 0.95199 0.98794 1.70032 1.39943 1.06082 1.34280 0.86136 0.77963 0.78430 0.83085 1.19636 1.20586 1.20576 1.23255 1.02478 1.00318 0.93437 1.21213 0.96296 1.01174 0.93703 0.86837 1.18986 0.93369 0.99242 0.93383 1.21007 0.92993 0.99552 0.99750 1.21132 0.97772 0.99199 0.94905 1.21170 0.99020 0.99338 0.94276 1.21118 0.93267 0.99101 0.99815 1.20885 0.97822 1.01151 0.93661 0.91664 0.92312 0.91833 0.91520 0.91067 0.76957 0.89504 0.89447 0.92293 0.88039 0.88105 0.86263 0.86171 0.86151 0.86124 0.86295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 9.72 37.16 0.36 -0.52 16 2 C -0.13 -1.15 2.13 -154.51 -0.33 -1.48 16 3 C 0.16 1.95 4.74 -4.04 -0.02 1.93 16 4 N -0.73 -10.38 4.89 -60.29 -0.29 -10.67 16 5 C 0.53 10.37 7.85 -10.99 -0.09 10.28 16 6 O -0.52 -12.22 15.86 5.55 0.09 -12.14 16 7 C -0.15 -3.17 6.16 36.00 0.22 -2.95 16 8 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 9 C -0.53 -15.42 9.50 30.94 0.29 -15.12 16 10 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 11 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 12 N -0.87 -26.43 13.22 55.49 0.73 -25.70 16 13 Si 0.92 21.61 29.55 -169.99 -5.02 16.59 16 14 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 C -0.16 -1.19 9.21 -26.73 -0.25 -1.44 16 18 C -0.11 -0.89 5.67 -91.77 -0.52 -1.41 16 19 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 20 C -0.05 -0.52 4.23 -104.62 -0.44 -0.96 16 21 C -0.12 -1.30 7.68 -39.58 -0.30 -1.60 16 22 C -0.11 -1.34 10.05 -39.58 -0.40 -1.73 16 23 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 24 C -0.11 -1.27 10.05 -39.59 -0.40 -1.67 16 25 C -0.12 -1.22 9.74 -39.59 -0.39 -1.60 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 28 H 0.06 0.52 8.14 -51.92 -0.42 0.09 16 29 H 0.07 0.89 5.64 -51.93 -0.29 0.59 16 30 H 0.07 0.96 8.12 -51.93 -0.42 0.54 16 31 H 0.40 4.88 8.12 -40.82 -0.33 4.55 16 32 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 33 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 34 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 35 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.10 0.77 6.11 -51.93 -0.32 0.46 16 37 H 0.12 1.22 5.19 -52.49 -0.27 0.95 16 38 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 39 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 41 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 LS Contribution 356.13 15.07 5.37 5.37 Total: -1.00 -34.39 356.13 -9.91 -44.31 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -5.83 Total: 4.19 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: -2.74 Total: -18.06 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.44 Total: -36.37 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.09 Total: -12.14 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.39 -9.91 -44.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355011556.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.144 kcal (2) G-P(sol) polarization free energy of solvation -34.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds