Wall clock time and date at job start Tue Mar 31 2020 08:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 115.54884 * 2 1 4 4 N 1.46504 * 109.47243 * 80.42516 * 3 2 1 5 5 C 1.34771 * 120.00265 * 184.63122 * 4 3 2 6 6 O 1.21284 * 119.99631 * 0.02562 * 5 4 3 7 7 C 1.50698 * 120.00208 * 180.02562 * 5 4 3 8 8 S 1.81004 * 109.47325 * 180.02562 * 7 5 4 9 9 C 1.76202 * 100.00034 * 180.02562 * 8 7 5 10 10 H 1.08000 * 119.99543 * 359.97438 * 9 8 7 11 11 C 1.38800 * 119.99756 * 180.02562 * 9 8 7 12 12 N 1.31629 * 119.99974 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99650 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47066 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46878 * 120.00365 * 13 11 9 16 16 H 1.48506 * 109.46976 * 240.00026 * 13 11 9 17 17 C 1.53001 * 117.51738 * 214.30045 * 2 1 3 18 18 C 1.53000 * 117.50068 * 145.66970 * 2 1 3 19 19 H 1.08997 * 117.49880 * 0.02562 * 18 2 1 20 20 C 1.50701 * 117.49871 * 215.02721 * 18 2 1 21 21 C 1.38238 * 119.99760 * 299.72453 * 20 18 2 22 22 C 1.38232 * 119.99615 * 179.78657 * 21 20 18 23 23 C 1.38234 * 120.00257 * 0.46961 * 22 21 20 24 24 C 1.38239 * 119.99616 * 359.76548 * 23 22 21 25 25 C 1.38224 * 120.00256 * 0.02562 * 24 23 22 26 26 H 1.08995 * 109.47174 * 54.70302 * 1 2 3 27 27 H 1.08997 * 109.47209 * 174.70851 * 1 2 3 28 28 H 1.09008 * 109.46840 * 294.70425 * 1 2 3 29 29 H 1.08999 * 109.47275 * 200.42991 * 3 2 1 30 30 H 1.08997 * 109.47187 * 320.42674 * 3 2 1 31 31 H 0.96999 * 119.99435 * 4.63560 * 4 3 2 32 32 H 1.08994 * 109.47418 * 300.00543 * 7 5 4 33 33 H 1.09000 * 109.46810 * 60.00104 * 7 5 4 34 34 H 0.96999 * 119.99754 * 180.02562 * 12 11 9 35 35 H 1.08993 * 117.49890 * 0.02562 * 17 2 1 36 36 H 1.09004 * 117.49722 * 145.02937 * 17 2 1 37 37 H 1.07998 * 120.00265 * 0.02562 * 21 20 18 38 38 H 1.08001 * 120.00097 * 180.25028 * 22 21 20 39 39 H 1.07998 * 120.00261 * 179.78306 * 23 22 21 40 40 H 1.08005 * 119.99485 * 180.02562 * 24 23 22 41 41 H 1.08004 * 120.00374 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 7 2.1932 1.9201 1.3620 5 6 2.6421 3.1702 1.5904 6 8 3.0429 3.8485 0.6684 7 6 2.6461 3.7251 2.9915 8 16 3.3008 5.4125 2.9704 9 6 3.1951 5.8032 4.6852 10 1 2.8089 5.0743 5.3823 11 6 3.6072 7.0482 5.1400 12 7 4.0764 7.9371 4.2901 13 14 3.4944 7.4627 6.9579 14 1 2.9364 6.3016 7.6967 15 1 4.8493 7.7757 7.4791 16 1 2.6085 8.6401 7.1432 17 6 2.2369 -1.1209 -0.7647 18 6 2.2365 -1.1207 0.7654 19 1 1.6113 -1.8583 1.2685 20 6 3.5288 -0.7803 1.4620 21 6 4.6067 -0.3168 0.7311 22 6 5.7906 -0.0003 1.3706 23 6 5.8998 -0.1566 2.7398 24 6 4.8234 -0.6247 3.4700 25 6 3.6381 -0.9371 2.8310 26 1 -0.3633 0.5938 -0.8387 27 1 -0.3633 -1.0232 -0.0948 28 1 -0.3633 0.4295 0.9337 29 1 3.2154 1.2929 -0.3587 30 1 1.6319 2.0498 -0.6547 31 1 1.8724 1.3777 2.0993 32 1 1.6282 3.7355 3.3811 33 1 3.2723 3.1000 3.6281 34 1 4.3647 8.8069 4.6080 35 1 1.6120 -1.8584 -1.2683 36 1 3.1721 -0.8750 -1.2677 37 1 4.5226 -0.1982 -0.3391 38 1 6.6314 0.3656 0.8002 39 1 6.8259 0.0873 3.2390 40 1 4.9086 -0.7464 4.5398 41 1 2.7972 -1.3032 3.4015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355011556.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:03 Heat of formation + Delta-G solvation = -15.532258 kcal Electronic energy + Delta-G solvation = -22364.710734 eV Core-core repulsion = 19142.263401 eV Total energy + Delta-G solvation = -3222.447332 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.32457 -40.16071 -38.53933 -35.13026 -34.58357 -32.17616 -31.78269 -31.14801 -29.00121 -27.77514 -27.01847 -24.73280 -23.29988 -21.81573 -21.40784 -20.37234 -19.65317 -18.13599 -17.67833 -16.92608 -16.87287 -16.69452 -16.30024 -15.92615 -15.73372 -15.29485 -15.08908 -14.60342 -14.43032 -14.23942 -14.11556 -13.88574 -13.66369 -13.39396 -13.16332 -13.15959 -12.91200 -12.68167 -12.62214 -12.33760 -11.84905 -11.83553 -11.71270 -11.28717 -11.17683 -11.15924 -10.70649 -10.27558 -10.07854 -9.75572 -9.36304 -8.66560 -8.34806 -6.12712 0.43826 0.53610 1.26735 1.41008 1.46651 1.58031 1.64473 2.21540 2.27614 2.71496 2.99392 3.15776 3.34028 3.52577 3.71862 3.84199 3.93916 4.01627 4.07517 4.14355 4.25481 4.28137 4.31925 4.48220 4.60722 4.65977 4.71794 4.77086 4.91318 4.97367 4.99661 5.09332 5.11552 5.19352 5.23132 5.38511 5.41698 5.46944 5.61628 5.67907 5.72552 6.15215 6.19938 6.52596 7.06514 7.26564 8.74778 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.016797 B = 0.003787 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.590944 B = 7391.406138 C = 8162.490582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.131 4.131 3 C 0.155 3.845 4 N -0.701 5.701 5 C 0.534 3.466 6 O -0.568 6.568 7 C -0.126 4.126 8 S -0.148 6.148 9 C -0.545 4.545 10 H 0.081 0.919 11 C 0.014 3.986 12 N -0.911 5.911 13 Si 0.998 3.002 14 H -0.257 1.257 15 H -0.273 1.273 16 H -0.273 1.273 17 C -0.146 4.146 18 C -0.102 4.102 19 H 0.137 0.863 20 C -0.053 4.053 21 C -0.128 4.128 22 C -0.134 4.134 23 C -0.140 4.140 24 C -0.126 4.126 25 C -0.121 4.121 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.410 0.590 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.271 0.729 35 H 0.126 0.874 36 H 0.096 0.904 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.135 0.865 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.326 -24.857 -5.123 25.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.131 4.131 3 C 0.032 3.968 4 N -0.353 5.353 5 C 0.320 3.680 6 O -0.447 6.447 7 C -0.278 4.278 8 S 0.079 5.921 9 C -0.693 4.693 10 H 0.099 0.901 11 C -0.190 4.190 12 N -0.548 5.548 13 Si 0.820 3.180 14 H -0.180 1.180 15 H -0.199 1.199 16 H -0.198 1.198 17 C -0.183 4.183 18 C -0.120 4.120 19 H 0.154 0.846 20 C -0.053 4.053 21 C -0.146 4.146 22 C -0.152 4.152 23 C -0.158 4.158 24 C -0.144 4.144 25 C -0.138 4.138 26 H 0.080 0.920 27 H 0.099 0.901 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.247 0.753 32 H 0.125 0.875 33 H 0.120 0.880 34 H 0.080 0.920 35 H 0.144 0.856 36 H 0.115 0.885 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.153 0.847 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.611 -23.593 -6.703 24.956 hybrid contribution -0.078 -0.095 2.132 2.136 sum -4.688 -23.688 -4.571 24.577 Atomic orbital electron populations 1.21335 0.89910 1.03272 1.02294 1.21724 0.95888 0.88740 1.06769 1.20866 1.00020 0.92941 0.83013 1.45637 1.65086 1.13771 1.10815 1.19996 0.76501 0.81886 0.89629 1.90678 1.47961 1.59894 1.46172 1.23324 1.05852 1.01297 0.97281 1.85550 1.83519 1.10328 1.12663 1.23224 1.49621 1.03601 0.92878 0.90091 1.26116 0.93742 0.94852 1.04315 1.70191 1.40950 1.06687 1.36961 0.84914 0.78267 0.78603 0.76216 1.18048 1.19886 1.19827 1.23374 1.02352 0.99511 0.93061 1.21304 0.95333 1.01004 0.94344 0.84568 1.19234 0.93918 0.98558 0.93635 1.21194 0.93258 0.99886 1.00262 1.21331 0.98470 1.00056 0.95382 1.21378 0.99844 1.00086 0.94464 1.21395 0.93379 0.98910 1.00681 1.21206 0.98243 1.00525 0.93861 0.92033 0.90062 0.92231 0.92473 0.92226 0.75350 0.87550 0.88045 0.91992 0.85620 0.88539 0.85784 0.86131 0.85750 0.84706 0.83892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 9.72 71.98 0.70 -0.66 16 2 C -0.13 -1.98 2.13 -52.18 -0.11 -2.09 16 3 C 0.15 3.69 4.74 86.38 0.41 4.10 16 4 N -0.70 -19.12 4.89 -463.06 -2.26 -21.38 16 5 C 0.53 20.76 7.85 87.66 0.69 21.45 16 6 O -0.57 -27.40 15.86 -3.04 -0.05 -27.44 16 7 C -0.13 -5.26 6.16 71.24 0.44 -4.82 16 8 S -0.15 -8.40 20.57 -56.49 -1.16 -9.56 16 9 C -0.55 -31.65 9.50 67.95 0.65 -31.01 16 10 H 0.08 4.39 7.80 -2.91 -0.02 4.36 16 11 C 0.01 0.83 5.49 84.86 0.47 1.30 16 12 N -0.91 -56.54 13.22 21.65 0.29 -56.25 16 13 Si 1.00 43.99 29.55 68.60 2.03 46.01 16 14 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 15 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 16 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 17 C -0.15 -1.76 9.21 30.60 0.28 -1.47 16 18 C -0.10 -1.37 5.67 -11.54 -0.07 -1.44 16 19 H 0.14 1.31 8.14 -2.39 -0.02 1.29 16 20 C -0.05 -1.00 4.23 -19.87 -0.08 -1.08 16 21 C -0.13 -2.82 7.68 22.27 0.17 -2.65 16 22 C -0.13 -3.26 10.05 22.27 0.22 -3.04 16 23 C -0.14 -3.29 10.05 22.27 0.22 -3.07 16 24 C -0.13 -2.62 10.05 22.27 0.22 -2.39 16 25 C -0.12 -2.21 9.74 22.27 0.22 -2.00 16 26 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.08 0.66 8.09 -2.39 -0.02 0.64 16 28 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.06 1.51 5.64 -2.39 -0.01 1.49 16 30 H 0.06 1.59 8.12 -2.39 -0.02 1.57 16 31 H 0.41 9.10 8.12 -92.71 -0.75 8.35 16 32 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 33 H 0.10 3.93 8.14 -2.39 -0.02 3.91 16 34 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 35 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.10 1.28 6.11 -2.39 -0.01 1.27 16 37 H 0.12 2.50 5.19 -2.91 -0.02 2.48 16 38 H 0.12 2.74 8.06 -2.91 -0.02 2.71 16 39 H 0.12 2.66 8.06 -2.91 -0.02 2.64 16 40 H 0.14 2.32 8.06 -2.91 -0.02 2.29 16 41 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -76.68 356.13 3.55 -73.13 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: 0.28 Total: 24.37 kcal Atomic # 6 Polarization: -33.29 SS G_CDS: 4.43 Total: -28.87 kcal Atomic # 7 Polarization: -75.66 SS G_CDS: -1.98 Total: -77.64 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.05 Total: -27.44 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: -8.40 SS G_CDS: -1.16 Total: -9.56 kcal Total: -76.68 3.55 -73.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355011556.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.597 kcal (2) G-P(sol) polarization free energy of solvation -76.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds