Wall clock time and date at job start Tue Mar 31 2020 08:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46895 * 2 1 4 4 C 1.53000 * 109.46958 * 120.00022 * 2 1 3 5 5 N 1.46500 * 115.55025 * 63.78783 * 4 2 1 6 6 C 1.34770 * 120.00486 * 56.11259 * 5 4 2 7 7 O 1.21553 * 119.99836 * 4.87045 * 6 5 4 8 8 C 1.47859 * 120.00489 * 184.87416 * 6 5 4 9 9 C 1.39674 * 120.09692 * 359.97403 * 8 6 5 10 10 C 1.38047 * 120.03549 * 180.02562 * 9 8 6 11 11 C 1.38177 * 120.24480 * 359.76394 * 10 9 8 12 12 C 1.39186 * 120.19944 * 0.51814 * 11 10 9 13 13 S 1.76196 * 120.01835 * 179.73502 * 12 11 10 14 14 C 1.76196 * 100.00309 * 264.74882 * 13 12 11 15 15 H 1.08003 * 119.99897 * 5.00499 * 14 13 12 16 16 C 1.38726 * 120.00258 * 185.00625 * 14 13 12 17 17 N 1.31630 * 120.00016 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00101 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47198 * 59.99735 * 18 16 14 20 20 H 1.48496 * 109.47094 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46920 * 299.99841 * 18 16 14 22 22 C 1.38869 * 119.95771 * 359.46353 * 12 11 10 23 23 C 1.53001 * 117.49622 * 209.45160 * 4 2 1 24 24 C 1.52993 * 117.50012 * 278.11489 * 4 2 1 25 25 H 1.08995 * 109.47116 * 304.96651 * 1 2 3 26 26 H 1.09003 * 109.47233 * 64.97241 * 1 2 3 27 27 H 1.08998 * 109.46815 * 184.96960 * 1 2 3 28 28 H 1.08996 * 109.46788 * 240.00142 * 2 1 3 29 29 H 1.09007 * 109.46829 * 60.00444 * 3 2 1 30 30 H 1.09006 * 109.47051 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47151 * 300.00164 * 3 2 1 32 32 H 0.97002 * 119.99788 * 236.11956 * 5 4 2 33 33 H 1.07995 * 119.98385 * 0.02583 * 9 8 6 34 34 H 1.08003 * 119.87528 * 180.02562 * 10 9 8 35 35 H 1.07999 * 119.90232 * 180.27882 * 11 10 9 36 36 H 0.96998 * 119.99606 * 180.02562 * 17 16 14 37 37 H 1.08001 * 120.11748 * 180.25568 * 22 12 11 38 38 H 1.08999 * 117.49754 * 215.00041 * 23 4 2 39 39 H 1.08994 * 117.49917 * 0.02565 * 23 4 2 40 40 H 1.09003 * 117.49940 * 359.97233 * 24 4 2 41 41 H 1.08998 * 117.50254 * 144.97667 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.7002 -2.1434 1.3408 6 6 2.0508 -2.9853 0.3485 7 8 2.7252 -2.5835 -0.5795 8 6 1.6151 -4.3976 0.3887 9 6 0.8404 -4.8616 1.4543 10 6 0.4348 -6.1807 1.4907 11 6 0.7880 -7.0459 0.4729 12 6 1.5646 -6.5956 -0.5908 13 16 2.0182 -7.7047 -1.8826 14 6 3.6090 -8.2040 -1.3128 15 1 3.9672 -7.8697 -0.3503 16 6 4.4013 -9.0264 -2.1004 17 7 3.9649 -9.4333 -3.2737 18 14 6.0875 -9.5562 -1.4960 19 1 5.9435 -10.3084 -0.2237 20 1 6.7283 -10.4252 -2.5156 21 1 6.9316 -8.3558 -1.2686 22 6 1.9770 -5.2703 -0.6361 23 6 3.3897 -0.2794 1.8186 24 6 2.0949 0.0773 2.5531 25 1 -0.3633 0.5889 0.8421 26 1 -0.3634 0.4348 -0.9312 27 1 -0.3633 -1.0238 0.0890 28 1 1.8933 -0.5138 -0.8900 29 1 1.6766 1.9563 0.8901 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.2227 -2.4790 2.1155 33 1 0.5587 -4.1882 2.2501 34 1 -0.1645 -6.5366 2.3157 35 1 0.4639 -8.0756 0.5048 36 1 4.5188 -10.0087 -3.8242 37 1 2.5761 -4.9172 -1.4624 38 1 4.0247 -1.0468 2.2613 39 1 3.9140 0.5253 1.3034 40 1 1.7681 1.1167 2.5209 41 1 1.8777 -0.4553 3.4790 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357198581.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:27:57 Heat of formation + Delta-G solvation = 4.146416 kcal Electronic energy + Delta-G solvation = -22058.708157 eV Core-core repulsion = 18837.114156 eV Total energy + Delta-G solvation = -3221.594001 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.40837 -38.71337 -37.32091 -33.72779 -32.75811 -32.50360 -30.69028 -30.40967 -27.26562 -25.56736 -24.39189 -23.17757 -22.63338 -22.18011 -20.59805 -18.88507 -18.32046 -17.38827 -16.69869 -15.79793 -15.60325 -15.19511 -14.84828 -14.65630 -14.45243 -14.19808 -13.88912 -13.43288 -13.26748 -13.09807 -12.92061 -12.36632 -12.25684 -11.94809 -11.73265 -11.64562 -11.29363 -11.17403 -11.16653 -11.10611 -11.06588 -10.85396 -10.70957 -10.28211 -9.94830 -9.57094 -9.14701 -9.04624 -8.96287 -8.57983 -8.03360 -6.71118 -6.28178 -4.02287 1.16452 1.66403 2.95107 3.06073 3.21085 3.23773 3.26880 3.46183 3.55685 4.09483 4.26461 4.37193 4.58219 4.68552 4.79959 4.94119 5.07344 5.08921 5.10492 5.13665 5.25146 5.33836 5.47118 5.47644 5.58443 5.64592 5.68555 5.72805 5.80851 5.87294 5.89610 5.96829 6.00665 6.11116 6.23210 6.26178 6.52424 6.59342 6.63439 6.93083 7.18929 7.52117 7.57557 8.32673 8.33311 9.17501 10.78517 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.019104 B = 0.003358 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.275497 B = 8337.530102 C = 8806.089890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.071 4.071 3 C -0.148 4.148 4 C 0.116 3.884 5 N -0.702 5.702 6 C 0.567 3.433 7 O -0.525 6.525 8 C -0.154 4.154 9 C -0.091 4.091 10 C -0.141 4.141 11 C -0.056 4.056 12 C -0.106 4.106 13 S -0.034 6.034 14 C -0.521 4.521 15 H 0.075 0.925 16 C 0.074 3.926 17 N -0.870 5.870 18 Si 0.921 3.079 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.273 1.273 22 C -0.019 4.019 23 C -0.180 4.180 24 C -0.176 4.176 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.095 0.905 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.399 0.601 33 H 0.116 0.884 34 H 0.123 0.877 35 H 0.131 0.869 36 H 0.270 0.730 37 H 0.139 0.861 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.394 17.609 12.390 22.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.091 4.091 3 C -0.206 4.206 4 C 0.029 3.971 5 N -0.354 5.354 6 C 0.356 3.644 7 O -0.401 6.401 8 C -0.159 4.159 9 C -0.110 4.110 10 C -0.161 4.161 11 C -0.077 4.077 12 C -0.217 4.217 13 S 0.200 5.800 14 C -0.668 4.668 15 H 0.093 0.907 16 C -0.135 4.135 17 N -0.506 5.506 18 Si 0.746 3.254 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.198 1.198 22 C -0.040 4.040 23 C -0.219 4.219 24 C -0.213 4.213 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.113 0.887 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.235 0.765 33 H 0.134 0.866 34 H 0.141 0.859 35 H 0.149 0.851 36 H 0.080 0.920 37 H 0.157 0.843 38 H 0.114 0.886 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.436 17.417 10.532 21.669 hybrid contribution 1.466 -0.179 2.004 2.489 sum -5.970 17.237 12.536 22.134 Atomic orbital electron populations 1.21745 0.94783 1.01906 1.01417 1.20824 0.95763 0.95388 0.97103 1.21974 1.01429 0.95339 1.01850 1.20590 1.00196 0.81269 0.95094 1.45271 1.60403 1.06461 1.23294 1.18388 0.78946 0.85356 0.81717 1.90750 1.37293 1.77631 1.34461 1.19871 1.04383 0.93181 0.98447 1.21133 0.97175 0.96039 0.96653 1.21055 1.02017 0.93520 0.99471 1.21958 0.94431 0.99631 0.91660 1.22854 0.99760 0.97717 1.01368 1.83596 1.22294 1.48880 1.25184 1.22796 1.01677 1.35567 1.06770 0.90686 1.24997 0.98734 0.95314 0.94470 1.69979 1.37644 1.32994 1.09942 0.86182 0.81956 0.78692 0.78529 1.19814 1.20710 1.19786 1.21948 0.94154 0.91688 0.96258 1.23499 0.91274 1.03739 1.03349 1.23375 1.02054 1.01060 0.94849 0.92889 0.92598 0.92636 0.88725 0.92518 0.92105 0.92220 0.76462 0.86608 0.85882 0.85076 0.91991 0.84319 0.88646 0.87745 0.87578 0.88601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.16 37.16 0.34 -1.03 16 2 C -0.07 -0.78 2.85 -90.62 -0.26 -1.04 16 3 C -0.15 -1.26 8.25 37.16 0.31 -0.95 16 4 C 0.12 1.24 1.80 -131.82 -0.24 1.01 16 5 N -0.70 -8.35 5.13 -48.54 -0.25 -8.60 16 6 C 0.57 9.18 7.57 -12.33 -0.09 9.08 16 7 O -0.53 -10.31 14.74 5.32 0.08 -10.23 16 8 C -0.15 -2.60 5.87 -105.00 -0.62 -3.22 16 9 C -0.09 -1.24 9.54 -39.12 -0.37 -1.62 16 10 C -0.14 -2.02 10.02 -39.67 -0.40 -2.41 16 11 C -0.06 -1.00 9.79 -39.25 -0.38 -1.38 16 12 C -0.11 -2.28 5.45 -39.00 -0.21 -2.49 16 13 S -0.03 -0.88 21.41 -107.50 -2.30 -3.19 16 14 C -0.52 -14.79 9.46 30.91 0.29 -14.49 16 15 H 0.07 2.11 7.79 -52.48 -0.41 1.70 16 16 C 0.07 2.08 5.49 -17.46 -0.10 1.99 16 17 N -0.87 -25.56 13.22 55.49 0.73 -24.83 16 18 Si 0.92 21.56 29.55 -169.99 -5.02 16.54 16 19 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 C -0.02 -0.38 9.34 -38.92 -0.36 -0.75 16 23 C -0.18 -1.81 9.74 -26.69 -0.26 -2.07 16 24 C -0.18 -1.38 9.78 -26.69 -0.26 -1.64 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.60 7.89 -51.93 -0.41 0.19 16 28 H 0.09 1.35 6.52 -51.93 -0.34 1.01 16 29 H 0.06 0.39 6.35 -51.93 -0.33 0.06 16 30 H 0.06 0.52 6.30 -51.93 -0.33 0.19 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.40 3.68 6.86 -40.82 -0.28 3.40 16 33 H 0.12 1.12 6.41 -52.49 -0.34 0.78 16 34 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 35 H 0.13 2.23 8.06 -52.49 -0.42 1.81 16 36 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.14 3.09 7.65 -52.49 -0.40 2.69 16 38 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.10 0.97 6.12 -51.93 -0.32 0.65 16 40 H 0.11 0.69 6.38 -51.93 -0.33 0.36 16 41 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 352.89 15.07 5.32 5.32 Total: -1.00 -32.33 352.89 -9.63 -41.97 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -5.58 Total: 4.04 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: -2.61 Total: -21.01 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: 0.48 Total: -33.43 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.08 Total: -10.23 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -0.88 SS G_CDS: -2.30 Total: -3.19 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.33 -9.63 -41.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357198581.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.112 kcal (2) G-P(sol) polarization free energy of solvation -32.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds