Wall clock time and date at job start Tue Mar 31 2020 08:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46895 * 2 1 4 4 C 1.53000 * 109.46958 * 120.00022 * 2 1 3 5 5 N 1.46500 * 115.55025 * 63.78783 * 4 2 1 6 6 C 1.34770 * 120.00486 * 56.11259 * 5 4 2 7 7 O 1.21553 * 119.99836 * 4.87045 * 6 5 4 8 8 C 1.47859 * 120.00489 * 184.87416 * 6 5 4 9 9 C 1.39674 * 120.09692 * 359.97403 * 8 6 5 10 10 C 1.38047 * 120.03549 * 180.02562 * 9 8 6 11 11 C 1.38177 * 120.24480 * 359.76394 * 10 9 8 12 12 C 1.39186 * 120.19944 * 0.51814 * 11 10 9 13 13 S 1.76196 * 120.01835 * 179.73502 * 12 11 10 14 14 C 1.76196 * 100.00309 * 264.74882 * 13 12 11 15 15 H 1.08003 * 119.99897 * 5.00499 * 14 13 12 16 16 C 1.38726 * 120.00258 * 185.00625 * 14 13 12 17 17 N 1.31630 * 120.00016 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00101 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47198 * 59.99735 * 18 16 14 20 20 H 1.48496 * 109.47094 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46920 * 299.99841 * 18 16 14 22 22 C 1.38869 * 119.95771 * 359.46353 * 12 11 10 23 23 C 1.53001 * 117.49622 * 209.45160 * 4 2 1 24 24 C 1.52993 * 117.50012 * 278.11489 * 4 2 1 25 25 H 1.08995 * 109.47116 * 304.96651 * 1 2 3 26 26 H 1.09003 * 109.47233 * 64.97241 * 1 2 3 27 27 H 1.08998 * 109.46815 * 184.96960 * 1 2 3 28 28 H 1.08996 * 109.46788 * 240.00142 * 2 1 3 29 29 H 1.09007 * 109.46829 * 60.00444 * 3 2 1 30 30 H 1.09006 * 109.47051 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47151 * 300.00164 * 3 2 1 32 32 H 0.97002 * 119.99788 * 236.11956 * 5 4 2 33 33 H 1.07995 * 119.98385 * 0.02583 * 9 8 6 34 34 H 1.08003 * 119.87528 * 180.02562 * 10 9 8 35 35 H 1.07999 * 119.90232 * 180.27882 * 11 10 9 36 36 H 0.96998 * 119.99606 * 180.02562 * 17 16 14 37 37 H 1.08001 * 120.11748 * 180.25568 * 22 12 11 38 38 H 1.08999 * 117.49754 * 215.00041 * 23 4 2 39 39 H 1.08994 * 117.49917 * 0.02565 * 23 4 2 40 40 H 1.09003 * 117.49940 * 359.97233 * 24 4 2 41 41 H 1.08998 * 117.50254 * 144.97667 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.7002 -2.1434 1.3408 6 6 2.0508 -2.9853 0.3485 7 8 2.7252 -2.5835 -0.5795 8 6 1.6151 -4.3976 0.3887 9 6 0.8404 -4.8616 1.4543 10 6 0.4348 -6.1807 1.4907 11 6 0.7880 -7.0459 0.4729 12 6 1.5646 -6.5956 -0.5908 13 16 2.0182 -7.7047 -1.8826 14 6 3.6090 -8.2040 -1.3128 15 1 3.9672 -7.8697 -0.3503 16 6 4.4013 -9.0264 -2.1004 17 7 3.9649 -9.4333 -3.2737 18 14 6.0875 -9.5562 -1.4960 19 1 5.9435 -10.3084 -0.2237 20 1 6.7283 -10.4252 -2.5156 21 1 6.9316 -8.3558 -1.2686 22 6 1.9770 -5.2703 -0.6361 23 6 3.3897 -0.2794 1.8186 24 6 2.0949 0.0773 2.5531 25 1 -0.3633 0.5889 0.8421 26 1 -0.3634 0.4348 -0.9312 27 1 -0.3633 -1.0238 0.0890 28 1 1.8933 -0.5138 -0.8900 29 1 1.6766 1.9563 0.8901 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.2227 -2.4790 2.1155 33 1 0.5587 -4.1882 2.2501 34 1 -0.1645 -6.5366 2.3157 35 1 0.4639 -8.0756 0.5048 36 1 4.5188 -10.0087 -3.8242 37 1 2.5761 -4.9172 -1.4624 38 1 4.0247 -1.0468 2.2613 39 1 3.9140 0.5253 1.3034 40 1 1.7681 1.1167 2.5209 41 1 1.8777 -0.4553 3.4790 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357198581.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:27:57 Heat of formation + Delta-G solvation = -15.552304 kcal Electronic energy + Delta-G solvation = -22059.562358 eV Core-core repulsion = 18837.114156 eV Total energy + Delta-G solvation = -3222.448202 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.51774 -39.84074 -38.55490 -34.77174 -34.66974 -33.63957 -32.03470 -31.74908 -27.99106 -27.76121 -25.53489 -24.13531 -23.61537 -23.32085 -21.80647 -20.03827 -19.82308 -19.00453 -17.59226 -17.11855 -16.94926 -16.66923 -16.53319 -15.90655 -15.58586 -15.30204 -15.23468 -14.84929 -14.62303 -14.05719 -13.88622 -13.76393 -13.27575 -13.13274 -12.99267 -12.97491 -12.69695 -12.60379 -12.49690 -12.40745 -12.02048 -11.91694 -11.77180 -11.68138 -11.32652 -11.22594 -10.84471 -10.59950 -10.09757 -9.83521 -9.70357 -8.82368 -8.40798 -6.21182 -0.19229 0.23933 1.27765 1.37396 1.43401 1.62282 1.79948 1.97916 2.23299 2.74670 2.85501 2.92120 3.39864 3.53982 3.69425 3.87080 3.92676 3.95255 4.00845 4.22760 4.29711 4.36315 4.39544 4.48656 4.66052 4.69488 4.78017 4.84014 4.90527 4.91978 5.00188 5.06883 5.20749 5.22069 5.23827 5.30662 5.36255 5.37813 5.42643 5.49091 5.59889 5.85125 6.13647 6.49428 6.99227 7.18277 8.66155 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.019104 B = 0.003358 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.275497 B = 8337.530102 C = 8806.089890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.074 4.074 3 C -0.144 4.144 4 C 0.086 3.914 5 N -0.679 5.679 6 C 0.564 3.436 7 O -0.572 6.572 8 C -0.157 4.157 9 C -0.064 4.064 10 C -0.120 4.120 11 C -0.064 4.064 12 C -0.128 4.128 13 S -0.095 6.095 14 C -0.538 4.538 15 H 0.067 0.933 16 C 0.020 3.980 17 N -0.906 5.906 18 Si 0.991 3.009 19 H -0.260 1.260 20 H -0.270 1.270 21 H -0.271 1.271 22 C -0.046 4.046 23 C -0.197 4.197 24 C -0.135 4.135 25 H 0.078 0.922 26 H 0.053 0.947 27 H 0.040 0.960 28 H 0.048 0.952 29 H 0.082 0.918 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.416 0.584 33 H 0.173 0.827 34 H 0.177 0.823 35 H 0.136 0.864 36 H 0.274 0.726 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.107 0.893 40 H 0.129 0.871 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.564 19.443 16.924 27.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.093 4.093 3 C -0.201 4.201 4 C -0.001 4.001 5 N -0.331 5.331 6 C 0.353 3.647 7 O -0.452 6.452 8 C -0.162 4.162 9 C -0.082 4.082 10 C -0.139 4.139 11 C -0.084 4.084 12 C -0.240 4.240 13 S 0.140 5.860 14 C -0.685 4.685 15 H 0.085 0.915 16 C -0.185 4.185 17 N -0.542 5.542 18 Si 0.813 3.187 19 H -0.184 1.184 20 H -0.194 1.194 21 H -0.196 1.196 22 C -0.068 4.068 23 C -0.235 4.235 24 C -0.172 4.172 25 H 0.097 0.903 26 H 0.073 0.927 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.101 0.899 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.255 0.745 33 H 0.190 0.810 34 H 0.194 0.806 35 H 0.153 0.847 36 H 0.084 0.916 37 H 0.118 0.882 38 H 0.101 0.899 39 H 0.125 0.875 40 H 0.147 0.853 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.642 19.268 15.111 25.967 hybrid contribution 1.724 -0.605 0.685 1.951 sum -6.918 18.663 15.795 25.410 Atomic orbital electron populations 1.21713 0.93741 1.01426 1.02490 1.20771 0.96648 0.96406 0.95504 1.21945 1.01100 0.93851 1.03208 1.20827 1.01557 0.80604 0.97065 1.45050 1.58960 1.06733 1.22318 1.18374 0.78722 0.85507 0.82113 1.90739 1.39586 1.78301 1.36576 1.19997 1.04654 0.93193 0.98328 1.21713 0.93850 0.96706 0.95964 1.21561 1.00598 0.92791 0.98958 1.22078 0.93913 1.00823 0.91632 1.22495 1.02878 0.96866 1.01714 1.83466 1.22096 1.51036 1.29432 1.23034 1.02795 1.36006 1.06708 0.91523 1.26010 1.02886 0.95084 0.94526 1.70104 1.39282 1.33676 1.11151 0.85108 0.76578 0.78381 0.78639 1.18399 1.19435 1.19645 1.21609 0.95674 0.92380 0.97155 1.23544 0.91732 1.03834 1.04373 1.23525 0.98447 1.01708 0.93509 0.90308 0.92747 0.94100 0.93392 0.89948 0.92651 0.92041 0.74504 0.80957 0.80600 0.84657 0.91649 0.88203 0.89865 0.87499 0.85342 0.86496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.16 71.98 0.66 -1.74 16 2 C -0.07 -1.55 2.85 -10.79 -0.03 -1.58 16 3 C -0.14 -2.18 8.25 71.98 0.59 -1.59 16 4 C 0.09 1.67 1.80 3.60 0.01 1.67 16 5 N -0.68 -14.57 5.13 -425.76 -2.18 -16.76 16 6 C 0.56 18.31 7.57 86.79 0.66 18.97 16 7 O -0.57 -23.95 14.74 -3.88 -0.06 -24.01 16 8 C -0.16 -5.22 5.87 -20.11 -0.12 -5.34 16 9 C -0.06 -1.48 9.54 22.57 0.22 -1.27 16 10 C -0.12 -2.91 10.02 22.21 0.22 -2.69 16 11 C -0.06 -2.23 9.79 22.48 0.22 -2.01 16 12 C -0.13 -5.77 5.45 22.65 0.12 -5.65 16 13 S -0.10 -5.29 21.41 -56.49 -1.21 -6.50 16 14 C -0.54 -32.15 9.46 67.94 0.64 -31.50 16 15 H 0.07 3.93 7.79 -2.91 -0.02 3.91 16 16 C 0.02 1.18 5.49 84.84 0.47 1.65 16 17 N -0.91 -55.35 13.22 21.64 0.29 -55.07 16 18 Si 0.99 45.21 29.55 68.60 2.03 47.23 16 19 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 22 C -0.05 -2.02 9.34 22.70 0.21 -1.81 16 23 C -0.20 -3.56 9.74 30.62 0.30 -3.26 16 24 C -0.13 -1.49 9.78 30.62 0.30 -1.19 16 25 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.04 0.82 7.89 -2.39 -0.02 0.80 16 28 H 0.05 1.46 6.52 -2.39 -0.02 1.45 16 29 H 0.08 0.82 6.35 -2.38 -0.02 0.80 16 30 H 0.05 0.90 6.30 -2.38 -0.02 0.88 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.42 5.73 6.86 -92.71 -0.64 5.09 16 33 H 0.17 2.09 6.41 -2.91 -0.02 2.07 16 34 H 0.18 2.57 8.06 -2.91 -0.02 2.55 16 35 H 0.14 4.55 8.06 -2.91 -0.02 4.52 16 36 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 37 H 0.10 5.01 7.65 -2.91 -0.02 4.99 16 38 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.11 1.85 6.12 -2.39 -0.01 1.83 16 40 H 0.13 0.92 6.38 -2.39 -0.02 0.90 16 41 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -79.26 352.89 3.74 -75.52 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.41 Total: 16.93 kcal Atomic # 6 Polarization: -41.82 SS G_CDS: 4.47 Total: -37.35 kcal Atomic # 7 Polarization: -69.93 SS G_CDS: -1.90 Total: -71.83 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.06 Total: -24.01 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Atomic # 16 Polarization: -5.29 SS G_CDS: -1.21 Total: -6.50 kcal Total: -79.26 3.74 -75.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357198581.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.965 kcal (2) G-P(sol) polarization free energy of solvation -79.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds