Wall clock time and date at job start Tue Mar 31 2020 08:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46766 * 2 1 4 4 H 1.08995 * 109.47112 * 304.89823 * 3 2 1 5 5 C 1.50702 * 109.46849 * 184.89511 * 3 2 1 6 6 H 1.08002 * 120.00200 * 245.45214 * 5 3 2 7 7 C 1.37881 * 119.99874 * 65.45670 * 5 3 2 8 8 N 1.31516 * 119.99999 * 9.46605 * 7 5 3 9 9 Si 1.86793 * 120.00037 * 189.46487 * 7 5 3 10 10 H 1.48494 * 109.47095 * 84.99534 * 9 7 5 11 11 H 1.48503 * 109.47068 * 204.99407 * 9 7 5 12 12 H 1.48503 * 109.47145 * 324.99348 * 9 7 5 13 13 N 1.46499 * 109.47055 * 64.90087 * 3 2 1 14 14 C 1.34778 * 119.99983 * 274.99925 * 13 3 2 15 15 O 1.21277 * 119.99701 * 0.02562 * 14 13 3 16 16 C 1.50696 * 120.00039 * 180.02562 * 14 13 3 17 17 C 1.50705 * 109.47095 * 180.02562 * 16 14 13 18 18 C 1.33975 * 126.90195 * 265.02270 * 17 16 14 19 19 O 1.34482 * 110.15144 * 180.02562 * 18 17 16 20 20 C 1.34812 * 110.88680 * 359.97438 * 19 18 17 21 21 C 1.38935 * 133.46679 * 179.97438 * 20 19 18 22 22 C 1.38040 * 119.79963 * 180.02562 * 21 20 19 23 23 F 1.35107 * 119.68816 * 179.97438 * 22 21 20 24 24 C 1.38948 * 120.62990 * 359.97438 * 22 21 20 25 25 C 1.36709 * 120.39368 * 0.02562 * 24 22 21 26 26 C 1.39409 * 119.75157 * 0.04329 * 25 24 22 27 27 H 1.08997 * 109.46921 * 60.00111 * 1 2 3 28 28 H 1.09001 * 109.46486 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47587 * 299.99813 * 1 2 3 30 30 H 1.09000 * 109.47395 * 240.00455 * 2 1 3 31 31 H 1.09000 * 109.47404 * 119.99991 * 2 1 3 32 32 H 0.96996 * 120.00250 * 179.97438 * 8 7 5 33 33 H 0.97004 * 120.00199 * 94.99728 * 13 3 2 34 34 H 1.08992 * 109.47571 * 59.99654 * 16 14 13 35 35 H 1.09009 * 109.47024 * 299.99464 * 16 14 13 36 36 H 1.07999 * 124.92141 * 0.26407 * 18 17 16 37 37 H 1.07999 * 120.09595 * 359.97438 * 21 20 19 38 38 H 1.08008 * 119.79999 * 180.02562 * 24 22 21 39 39 H 1.07998 * 120.12633 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6067 1.9811 -0.8428 5 6 3.5421 1.4443 -0.1212 6 1 4.1492 1.8092 0.6940 7 6 4.1413 0.9802 -1.2731 8 7 3.4098 0.7116 -2.3325 9 14 5.9919 0.7330 -1.3288 10 1 6.3290 -0.6063 -0.7833 11 1 6.4619 0.8278 -2.7343 12 1 6.6561 1.7812 -0.5130 13 7 1.6503 2.0983 1.2508 14 6 0.4327 2.6652 1.3636 15 8 -0.3404 2.6321 0.4298 16 6 0.0321 3.3401 2.6500 17 6 -1.3657 3.8872 2.5161 18 6 -1.7117 5.1346 2.1707 19 8 -3.0509 5.2567 2.1559 20 6 -3.6433 4.0930 2.4910 21 6 -4.9690 3.6982 2.6214 22 6 -5.2654 2.4013 2.9899 23 9 -6.5554 2.0199 3.1166 24 6 -4.2499 1.4843 3.2317 25 6 -2.9397 1.8547 3.1083 26 6 -2.6219 3.1607 2.7385 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8313 0.3855 -3.1429 33 1 2.2685 2.1244 1.9978 34 1 0.7231 4.1557 2.8630 35 1 0.0621 2.6164 3.4647 36 1 -1.0160 5.9261 1.9343 37 1 -5.7650 4.4040 2.4359 38 1 -4.4971 0.4729 3.5189 39 1 -2.1539 1.1383 3.2969 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358054236.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:29 Heat of formation + Delta-G solvation = -62.760776 kcal Electronic energy + Delta-G solvation = -24469.851956 eV Core-core repulsion = 20679.143465 eV Total energy + Delta-G solvation = -3790.708491 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.07730 -42.53285 -39.00049 -37.72985 -35.19759 -33.70149 -32.36754 -31.19145 -30.78297 -29.52741 -28.00094 -26.57764 -23.69375 -23.05853 -22.45118 -21.13710 -19.87084 -19.32954 -17.89896 -17.55387 -17.05336 -16.76139 -16.27556 -15.69246 -15.48966 -15.25903 -15.07648 -14.86174 -14.52854 -14.14453 -13.88737 -13.25088 -13.02830 -12.87708 -12.78382 -12.37674 -12.09289 -12.00675 -11.61600 -11.41741 -11.31556 -11.05712 -11.03005 -10.79594 -10.37869 -10.23394 -10.01130 -9.71482 -9.13014 -9.00326 -8.77503 -8.50143 -8.13314 -7.85348 -6.16884 -4.22523 0.69613 1.11881 2.23216 2.60922 3.22807 3.29868 3.30757 3.38985 3.44085 4.13160 4.18275 4.34875 4.39050 4.53278 4.75043 4.78702 5.08121 5.15117 5.16126 5.31635 5.52696 5.55820 5.64712 5.79995 5.88974 6.02873 6.15599 6.32241 6.33293 6.36704 6.49313 6.57870 6.95824 7.03185 7.15133 7.30466 7.40617 7.59315 7.69256 7.82517 8.05732 8.66133 8.77787 9.13732 9.43796 10.91202 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.026345 B = 0.003238 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.580984 B = 8646.028332 C = 9225.380473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.119 4.119 3 C 0.269 3.731 4 H 0.055 0.945 5 C -0.538 4.538 6 H 0.061 0.939 7 C 0.069 3.931 8 N -0.879 5.879 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.710 5.710 14 C 0.499 3.501 15 O -0.539 6.539 16 C -0.077 4.077 17 C -0.139 4.139 18 C 0.014 3.986 19 O -0.189 6.189 20 C 0.077 3.923 21 C -0.147 4.147 22 C 0.121 3.879 23 F -0.135 7.135 24 C -0.169 4.169 25 C -0.033 4.033 26 C -0.119 4.119 27 H 0.050 0.950 28 H 0.022 0.978 29 H 0.041 0.959 30 H 0.078 0.922 31 H 0.034 0.966 32 H 0.265 0.735 33 H 0.388 0.612 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.210 0.790 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.188 5.101 13.262 18.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.159 4.159 3 C 0.167 3.833 4 H 0.073 0.927 5 C -0.576 4.576 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.516 5.516 9 Si 0.724 3.276 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.358 5.358 14 C 0.283 3.717 15 O -0.417 6.417 16 C -0.117 4.117 17 C -0.141 4.141 18 C -0.050 4.050 19 O -0.090 6.090 20 C 0.030 3.970 21 C -0.166 4.166 22 C 0.101 3.899 23 F -0.113 7.113 24 C -0.188 4.188 25 C -0.051 4.051 26 C -0.120 4.120 27 H 0.069 0.931 28 H 0.041 0.959 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.220 0.780 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.226 0.774 37 H 0.160 0.840 38 H 0.159 0.841 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.916 5.218 12.294 17.899 hybrid contribution 1.267 -0.362 0.185 1.330 sum -10.649 4.856 12.479 17.109 Atomic orbital electron populations 1.21830 0.98009 0.98068 1.01516 1.21851 0.92947 0.99955 1.01099 1.18771 0.94251 0.88853 0.81378 0.92692 1.21180 0.90620 1.44076 1.01772 0.92111 1.24891 0.98428 0.95165 0.95010 1.69982 1.35755 1.43690 1.02139 0.86543 0.85051 0.78717 0.77273 1.20429 1.21191 1.19918 1.46481 1.14610 1.56198 1.18522 1.20228 0.82831 0.79744 0.88888 1.90703 1.51353 1.59353 1.40246 1.20110 0.91883 1.01465 0.98233 1.20467 0.93733 0.93176 1.06695 1.23727 0.80712 0.98953 1.01642 1.84006 1.19721 1.32587 1.72703 1.19009 0.93273 0.84546 1.00221 1.19537 0.93343 0.95804 1.07905 1.17064 0.78545 0.92434 1.01843 1.91511 1.34832 1.91445 1.93537 1.20712 0.91854 1.00271 1.05922 1.20121 0.95893 0.93911 0.95149 1.19779 0.92591 0.94968 1.04672 0.93055 0.95880 0.94010 0.90335 0.94763 0.92546 0.78035 0.88117 0.88388 0.77377 0.83979 0.84146 0.84546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.51 37.16 0.32 -2.64 16 2 C -0.12 -2.79 5.50 -26.73 -0.15 -2.93 16 3 C 0.27 6.51 2.11 -69.08 -0.15 6.37 16 4 H 0.06 1.58 7.52 -51.93 -0.39 1.19 16 5 C -0.54 -13.79 8.66 -34.44 -0.30 -14.09 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 7 C 0.07 1.82 5.16 -17.82 -0.09 1.73 16 8 N -0.88 -24.55 12.16 55.43 0.67 -23.88 16 9 Si 0.90 20.22 29.55 -169.99 -5.02 15.19 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 13 N -0.71 -13.60 5.02 -54.93 -0.28 -13.88 16 14 C 0.50 9.01 6.39 -10.99 -0.07 8.94 16 15 O -0.54 -11.99 13.17 5.56 0.07 -11.91 16 16 C -0.08 -0.97 6.25 -29.03 -0.18 -1.15 16 17 C -0.14 -1.89 4.85 -102.65 -0.50 -2.39 16 18 C 0.01 0.17 11.89 29.23 0.35 0.52 16 19 O -0.19 -2.57 10.58 3.81 0.04 -2.53 16 20 C 0.08 1.07 7.41 -38.48 -0.29 0.79 16 21 C -0.15 -1.79 10.04 -39.40 -0.40 -2.18 16 22 C 0.12 1.45 7.28 -39.39 -0.29 1.16 16 23 F -0.13 -1.59 17.25 2.25 0.04 -1.55 16 24 C -0.17 -1.94 9.96 -39.87 -0.40 -2.34 16 25 C -0.03 -0.41 10.05 -39.70 -0.40 -0.81 16 26 C -0.12 -1.68 6.38 -105.15 -0.67 -2.35 16 27 H 0.05 1.21 7.84 -51.93 -0.41 0.80 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.04 0.86 5.65 -51.93 -0.29 0.57 16 30 H 0.08 2.04 6.80 -51.93 -0.35 1.68 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.39 6.29 8.53 -40.82 -0.35 5.94 16 34 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.10 1.03 8.14 -51.92 -0.42 0.60 16 36 H 0.21 1.80 8.06 -52.49 -0.42 1.37 16 37 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 38 H 0.14 1.28 8.06 -52.48 -0.42 0.86 16 39 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 336.67 15.07 5.07 5.07 Total: -1.00 -31.27 336.67 -7.32 -38.59 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -4.72 Total: 6.25 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -3.20 Total: -11.36 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.40 Total: -37.75 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: 0.11 Total: -14.44 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.27 -7.32 -38.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358054236.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.171 kcal (2) G-P(sol) polarization free energy of solvation -31.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds