Wall clock time and date at job start Tue Mar 31 2020 08:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46766 * 2 1 4 4 H 1.08995 * 109.47112 * 304.89823 * 3 2 1 5 5 C 1.50702 * 109.46849 * 184.89511 * 3 2 1 6 6 H 1.08002 * 120.00200 * 245.45214 * 5 3 2 7 7 C 1.37881 * 119.99874 * 65.45670 * 5 3 2 8 8 N 1.31516 * 119.99999 * 9.46605 * 7 5 3 9 9 Si 1.86793 * 120.00037 * 189.46487 * 7 5 3 10 10 H 1.48494 * 109.47095 * 84.99534 * 9 7 5 11 11 H 1.48503 * 109.47068 * 204.99407 * 9 7 5 12 12 H 1.48503 * 109.47145 * 324.99348 * 9 7 5 13 13 N 1.46499 * 109.47055 * 64.90087 * 3 2 1 14 14 C 1.34778 * 119.99983 * 274.99925 * 13 3 2 15 15 O 1.21277 * 119.99701 * 0.02562 * 14 13 3 16 16 C 1.50696 * 120.00039 * 180.02562 * 14 13 3 17 17 C 1.50705 * 109.47095 * 180.02562 * 16 14 13 18 18 C 1.33975 * 126.90195 * 265.02270 * 17 16 14 19 19 O 1.34482 * 110.15144 * 180.02562 * 18 17 16 20 20 C 1.34812 * 110.88680 * 359.97438 * 19 18 17 21 21 C 1.38935 * 133.46679 * 179.97438 * 20 19 18 22 22 C 1.38040 * 119.79963 * 180.02562 * 21 20 19 23 23 F 1.35107 * 119.68816 * 179.97438 * 22 21 20 24 24 C 1.38948 * 120.62990 * 359.97438 * 22 21 20 25 25 C 1.36709 * 120.39368 * 0.02562 * 24 22 21 26 26 C 1.39409 * 119.75157 * 0.04329 * 25 24 22 27 27 H 1.08997 * 109.46921 * 60.00111 * 1 2 3 28 28 H 1.09001 * 109.46486 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47587 * 299.99813 * 1 2 3 30 30 H 1.09000 * 109.47395 * 240.00455 * 2 1 3 31 31 H 1.09000 * 109.47404 * 119.99991 * 2 1 3 32 32 H 0.96996 * 120.00250 * 179.97438 * 8 7 5 33 33 H 0.97004 * 120.00199 * 94.99728 * 13 3 2 34 34 H 1.08992 * 109.47571 * 59.99654 * 16 14 13 35 35 H 1.09009 * 109.47024 * 299.99464 * 16 14 13 36 36 H 1.07999 * 124.92141 * 0.26407 * 18 17 16 37 37 H 1.07999 * 120.09595 * 359.97438 * 21 20 19 38 38 H 1.08008 * 119.79999 * 180.02562 * 24 22 21 39 39 H 1.07998 * 120.12633 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6067 1.9811 -0.8428 5 6 3.5421 1.4443 -0.1212 6 1 4.1492 1.8092 0.6940 7 6 4.1413 0.9802 -1.2731 8 7 3.4098 0.7116 -2.3325 9 14 5.9919 0.7330 -1.3288 10 1 6.3290 -0.6063 -0.7833 11 1 6.4619 0.8278 -2.7343 12 1 6.6561 1.7812 -0.5130 13 7 1.6503 2.0983 1.2508 14 6 0.4327 2.6652 1.3636 15 8 -0.3404 2.6321 0.4298 16 6 0.0321 3.3401 2.6500 17 6 -1.3657 3.8872 2.5161 18 6 -1.7117 5.1346 2.1707 19 8 -3.0509 5.2567 2.1559 20 6 -3.6433 4.0930 2.4910 21 6 -4.9690 3.6982 2.6214 22 6 -5.2654 2.4013 2.9899 23 9 -6.5554 2.0199 3.1166 24 6 -4.2499 1.4843 3.2317 25 6 -2.9397 1.8547 3.1083 26 6 -2.6219 3.1607 2.7385 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8313 0.3855 -3.1429 33 1 2.2685 2.1244 1.9978 34 1 0.7231 4.1557 2.8630 35 1 0.0621 2.6164 3.4647 36 1 -1.0160 5.9261 1.9343 37 1 -5.7650 4.4040 2.4359 38 1 -4.4971 0.4729 3.5189 39 1 -2.1539 1.1383 3.2969 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358054236.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:28 Heat of formation + Delta-G solvation = -81.504746 kcal Electronic energy + Delta-G solvation = -24470.664755 eV Core-core repulsion = 20679.143465 eV Total energy + Delta-G solvation = -3791.521290 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.00420 -43.49509 -40.52841 -38.66010 -36.93232 -34.80383 -34.22440 -32.87385 -31.76972 -30.56795 -29.35992 -28.16864 -24.96220 -24.60829 -23.39693 -22.58880 -21.30297 -20.82704 -18.98363 -18.77473 -18.33592 -17.68216 -17.50114 -17.13927 -16.99696 -16.46326 -16.31396 -16.06586 -15.88799 -15.38043 -14.89366 -14.70133 -14.57926 -14.20483 -13.96515 -13.53343 -13.46925 -13.31163 -13.23300 -12.95704 -12.86622 -12.61245 -12.48273 -12.17232 -12.03940 -12.00957 -11.58742 -11.08626 -11.02907 -10.54055 -10.43466 -9.74512 -9.54777 -9.09774 -8.17028 -6.29686 -0.24385 0.16682 1.24820 1.45901 1.46984 1.56089 1.68281 1.99013 2.39233 2.47991 2.88127 3.14918 3.24247 3.43307 3.57431 3.83831 3.90775 4.11629 4.19863 4.37350 4.42482 4.48708 4.55982 4.64846 4.68489 4.76055 4.90021 4.95918 5.08026 5.10209 5.22949 5.26750 5.39719 5.45054 5.58031 5.58294 5.67036 5.78793 5.99532 6.06775 6.11968 6.81057 7.11358 7.37677 7.72621 8.91405 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.026345 B = 0.003238 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.580984 B = 8646.028332 C = 9225.380473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.112 4.112 3 C 0.278 3.722 4 H -0.001 1.001 5 C -0.547 4.547 6 H 0.074 0.926 7 C 0.016 3.984 8 N -0.918 5.918 9 Si 0.965 3.035 10 H -0.272 1.272 11 H -0.291 1.291 12 H -0.262 1.262 13 N -0.707 5.707 14 C 0.496 3.504 15 O -0.585 6.585 16 C -0.060 4.060 17 C -0.164 4.164 18 C 0.018 3.982 19 O -0.198 6.198 20 C 0.053 3.947 21 C -0.149 4.149 22 C 0.113 3.887 23 F -0.134 7.134 24 C -0.164 4.164 25 C -0.046 4.046 26 C -0.138 4.138 27 H 0.019 0.981 28 H 0.044 0.956 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.263 0.737 33 H 0.405 0.595 34 H 0.136 0.864 35 H 0.126 0.874 36 H 0.242 0.758 37 H 0.159 0.841 38 H 0.164 0.836 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.423 5.237 15.481 19.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.151 4.151 3 C 0.174 3.826 4 H 0.017 0.983 5 C -0.585 4.585 6 H 0.093 0.907 7 C -0.184 4.184 8 N -0.556 5.556 9 Si 0.790 3.210 10 H -0.197 1.197 11 H -0.217 1.217 12 H -0.186 1.186 13 N -0.356 5.356 14 C 0.284 3.716 15 O -0.465 6.465 16 C -0.100 4.100 17 C -0.166 4.166 18 C -0.046 4.046 19 O -0.099 6.099 20 C 0.006 3.994 21 C -0.168 4.168 22 C 0.094 3.906 23 F -0.113 7.113 24 C -0.182 4.182 25 C -0.064 4.064 26 C -0.139 4.139 27 H 0.038 0.962 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.240 0.760 34 H 0.154 0.846 35 H 0.144 0.856 36 H 0.258 0.742 37 H 0.176 0.824 38 H 0.182 0.818 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -11.147 5.367 14.570 19.114 hybrid contribution 0.943 -0.363 -0.515 1.134 sum -10.204 5.004 14.055 18.075 Atomic orbital electron populations 1.21657 0.96721 0.99075 1.00447 1.21701 0.93980 0.99275 1.00186 1.18294 0.93463 0.88910 0.81947 0.98271 1.21584 0.91547 1.43358 1.02001 0.90743 1.25772 1.02991 0.94980 0.94704 1.70141 1.37722 1.44991 1.02779 0.85471 0.79526 0.79049 0.76979 1.19702 1.21746 1.18588 1.46227 1.15760 1.56272 1.17377 1.21173 0.81527 0.78666 0.90268 1.90694 1.52502 1.60809 1.42518 1.20064 0.91973 1.02683 0.95236 1.20676 0.93997 0.93749 1.08152 1.24434 0.80578 0.99696 0.99858 1.83998 1.20428 1.32724 1.72793 1.19291 0.93942 0.84837 1.01371 1.19770 0.93421 0.96340 1.07285 1.17179 0.78745 0.92608 1.02106 1.91512 1.34777 1.91418 1.93558 1.20994 0.91359 1.01219 1.04656 1.20345 0.96712 0.93768 0.95556 1.20124 0.93119 0.95701 1.04925 0.96160 0.93692 0.92970 0.93548 0.93132 0.92800 0.75986 0.84605 0.85630 0.74193 0.82383 0.81815 0.83312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.28 8.51 71.98 0.61 -4.66 16 2 C -0.11 -5.28 5.50 30.60 0.17 -5.11 16 3 C 0.28 13.61 2.11 44.25 0.09 13.70 16 4 H 0.00 -0.04 7.52 -2.39 -0.02 -0.06 16 5 C -0.55 -27.87 8.66 25.60 0.22 -27.65 16 6 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 7 C 0.02 0.84 5.16 84.66 0.44 1.27 16 8 N -0.92 -52.78 12.16 21.45 0.26 -52.52 16 9 Si 0.96 41.23 29.55 68.60 2.03 43.25 16 10 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 11 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 12 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 13 N -0.71 -26.25 5.02 -446.10 -2.24 -28.49 16 14 C 0.50 17.34 6.39 87.66 0.56 17.90 16 15 O -0.58 -26.26 13.17 -3.02 -0.04 -26.30 16 16 C -0.06 -1.34 6.25 29.10 0.18 -1.16 16 17 C -0.16 -4.17 4.85 -18.59 -0.09 -4.26 16 18 C 0.02 0.42 11.89 66.85 0.79 1.22 16 19 O -0.20 -5.23 10.58 -9.29 -0.10 -5.33 16 20 C 0.05 1.44 7.41 22.98 0.17 1.61 16 21 C -0.15 -3.54 10.04 22.39 0.22 -3.31 16 22 C 0.11 2.60 7.28 22.39 0.16 2.76 16 23 F -0.13 -3.01 17.25 44.97 0.78 -2.23 16 24 C -0.16 -3.51 9.96 22.08 0.22 -3.29 16 25 C -0.05 -1.09 10.05 22.19 0.22 -0.87 16 26 C -0.14 -3.74 6.38 -20.21 -0.13 -3.87 16 27 H 0.02 0.96 7.84 -2.39 -0.02 0.94 16 28 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.05 2.12 5.65 -2.39 -0.01 2.11 16 30 H 0.05 2.47 6.80 -2.39 -0.02 2.45 16 31 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 33 H 0.41 12.15 8.53 -92.71 -0.79 11.36 16 34 H 0.14 2.09 8.14 -2.39 -0.02 2.08 16 35 H 0.13 2.14 8.14 -2.38 -0.02 2.12 16 36 H 0.24 3.52 8.06 -2.91 -0.02 3.50 16 37 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 38 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 39 H 0.15 3.05 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -70.34 336.67 4.84 -65.51 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: 0.30 Total: 21.83 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: 3.85 Total: -15.73 kcal Atomic # 7 Polarization: -79.03 SS G_CDS: -1.98 Total: -81.00 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -0.14 Total: -31.63 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.78 Total: -2.23 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.25 kcal Total: -70.34 4.84 -65.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358054236.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.998 kcal (2) G-P(sol) polarization free energy of solvation -70.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds