Wall clock time and date at job start Tue Mar 31 2020 08:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46925 * 2 1 4 4 H 1.08995 * 109.46999 * 304.99919 * 3 2 1 5 5 C 1.50697 * 109.46998 * 184.99988 * 3 2 1 6 6 H 1.08000 * 119.99596 * 240.00448 * 5 3 2 7 7 C 1.37877 * 120.00246 * 59.99934 * 5 3 2 8 8 N 1.31510 * 119.99662 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00021 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47216 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46909 * 120.00100 * 9 7 5 12 12 H 1.48497 * 109.47109 * 239.99799 * 9 7 5 13 13 N 1.46495 * 109.46944 * 64.99774 * 3 2 1 14 14 C 1.34780 * 120.00400 * 274.99714 * 13 3 2 15 15 O 1.21715 * 119.99543 * 0.02562 * 14 13 3 16 16 C 1.46231 * 120.00242 * 180.02562 * 14 13 3 17 17 C 1.35590 * 120.14534 * 180.02562 * 16 14 13 18 18 C 1.47117 * 117.87913 * 180.93896 * 17 16 14 19 19 C 1.39457 * 121.46261 * 196.11834 * 18 17 16 20 20 C 1.38139 * 119.49826 * 179.97438 * 19 18 17 21 21 F 1.35099 * 119.85782 * 180.02562 * 20 19 18 22 22 C 1.38763 * 120.29397 * 359.97438 * 20 19 18 23 23 C 1.38253 * 120.60769 * 0.02562 * 22 20 19 24 24 C 1.38334 * 119.88963 * 0.28769 * 23 22 20 25 25 O 1.35625 * 121.27834 * 180.24200 * 24 23 22 26 26 C 1.42788 * 117.42597 * 145.73913 * 25 24 23 27 27 H 1.09003 * 109.47223 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47470 * 300.00140 * 1 2 3 29 29 H 1.09006 * 109.47334 * 60.00057 * 1 2 3 30 30 H 1.08997 * 109.46985 * 239.99930 * 2 1 3 31 31 H 1.08993 * 109.46842 * 119.99541 * 2 1 3 32 32 H 0.97006 * 119.99798 * 179.97438 * 8 7 5 33 33 H 0.97006 * 119.99915 * 95.00074 * 13 3 2 34 34 H 1.07995 * 121.06099 * 0.95154 * 17 16 14 35 35 H 1.08002 * 120.25048 * 359.92557 * 19 18 17 36 36 H 1.08000 * 119.69494 * 180.02562 * 22 20 19 37 37 H 1.08002 * 120.05077 * 180.02562 * 23 22 20 38 38 H 1.09005 * 109.30298 * 287.77382 * 26 25 24 39 39 H 1.08996 * 109.13744 * 168.28701 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8889 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 3.4062 0.3367 -2.1728 9 14 6.0050 0.8802 -1.3810 10 1 6.5988 1.5443 -0.1929 11 1 6.4962 -0.5189 -1.4625 12 1 6.4000 1.6157 -2.6090 13 7 1.6523 2.0975 1.2518 14 6 0.4350 2.6644 1.3669 15 8 -0.3424 2.6318 0.4310 16 6 0.0483 3.3187 2.6162 17 6 -1.1758 3.8895 2.7354 18 6 -1.5049 4.5523 4.0069 19 6 -2.8208 4.8680 4.3440 20 6 -3.0837 5.4901 5.5490 21 9 -4.3559 5.7987 5.8831 22 6 -2.0471 5.7984 6.4185 23 6 -0.7396 5.4892 6.0927 24 6 -0.4570 4.8721 4.8873 25 8 0.8147 4.5518 4.5414 26 6 1.0083 3.3615 3.7769 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 3.8294 -0.0611 -2.9498 33 1 2.2719 2.1232 1.9978 34 1 -1.8866 3.8584 1.9230 35 1 -3.6280 4.6287 3.6676 36 1 -2.2638 6.2844 7.3583 37 1 0.0602 5.7329 6.7763 38 1 0.8427 2.4929 4.4144 39 1 2.0307 3.3416 3.3994 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358055237.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:13 Heat of formation + Delta-G solvation = -81.247286 kcal Electronic energy + Delta-G solvation = -24299.558132 eV Core-core repulsion = 20508.048006 eV Total energy + Delta-G solvation = -3791.510126 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.09869 -40.97011 -39.09449 -37.50063 -35.30131 -34.09471 -32.56533 -31.41244 -30.49842 -30.19249 -27.13830 -26.03135 -24.52904 -23.03560 -23.00913 -21.32653 -19.65173 -18.94463 -18.35170 -17.79694 -17.19084 -16.48436 -16.05029 -15.80319 -15.58471 -15.22854 -14.98200 -14.57113 -14.45299 -14.16155 -13.80454 -13.57041 -13.36133 -13.00924 -12.74933 -12.60747 -12.21714 -11.79596 -11.66079 -11.52894 -11.30989 -11.02162 -10.90215 -10.86106 -10.36152 -10.30957 -10.22531 -9.69433 -9.24006 -9.09937 -8.96293 -8.56032 -8.15179 -7.90533 -6.17539 -4.27361 0.21769 0.85225 1.72115 2.94970 3.20637 3.28888 3.31076 3.34268 3.75476 3.80740 4.03107 4.28914 4.30480 4.40416 4.50052 4.69875 4.88860 5.04431 5.10331 5.14418 5.24543 5.47558 5.51379 5.69642 5.75036 5.78913 6.18275 6.21263 6.34094 6.40053 6.40366 6.60287 6.98179 7.03869 7.13656 7.27922 7.34527 7.55486 7.65745 7.83276 8.11644 8.53394 8.69974 8.98166 9.39990 10.87826 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.027915 B = 0.003097 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.814747 B = 9037.931894 C = 9784.349520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.700 5.700 14 C 0.544 3.456 15 O -0.542 6.542 16 C -0.199 4.199 17 C -0.032 4.032 18 C -0.106 4.106 19 C -0.099 4.099 20 C 0.067 3.933 21 F -0.140 7.140 22 C -0.115 4.115 23 C -0.117 4.117 24 C 0.127 3.873 25 O -0.304 6.304 26 C 0.104 3.896 27 H 0.023 0.977 28 H 0.037 0.963 29 H 0.050 0.950 30 H 0.100 0.900 31 H 0.032 0.968 32 H 0.264 0.736 33 H 0.387 0.613 34 H 0.152 0.848 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.145 0.855 38 H 0.079 0.921 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.353 7.598 16.441 19.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.348 5.348 14 C 0.330 3.670 15 O -0.422 6.422 16 C -0.202 4.202 17 C -0.052 4.052 18 C -0.107 4.107 19 C -0.118 4.118 20 C 0.048 3.952 21 F -0.118 7.118 22 C -0.134 4.134 23 C -0.136 4.136 24 C 0.082 3.918 25 O -0.217 6.217 26 C 0.029 3.971 27 H 0.042 0.958 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.118 0.882 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.220 0.780 34 H 0.169 0.831 35 H 0.163 0.837 36 H 0.161 0.839 37 H 0.163 0.837 38 H 0.097 0.903 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.698 7.547 15.606 19.395 hybrid contribution 0.921 -0.120 0.094 0.934 sum -7.776 7.427 15.700 19.029 Atomic orbital electron populations 1.21848 0.98340 0.98136 1.01207 1.21941 0.92619 0.99660 1.02416 1.18853 0.94390 0.89247 0.80721 0.93076 1.21248 0.90569 1.39186 1.06427 0.91984 1.24884 0.98688 0.94717 0.95344 1.69900 1.35109 1.37493 1.09327 0.86394 0.84745 0.77800 0.78179 1.19696 1.20851 1.20855 1.46515 1.14237 1.55307 1.18708 1.17602 0.83243 0.79622 0.86543 1.90805 1.51530 1.60153 1.39748 1.22837 0.96274 1.03692 0.97423 1.22215 0.95621 0.92538 0.94781 1.19011 0.92813 1.03669 0.95248 1.21059 0.96549 0.98298 0.95927 1.17480 0.79240 1.02951 0.95564 1.91504 1.36478 1.91290 1.92568 1.21069 0.91258 1.00930 1.00135 1.20388 0.96521 1.02368 0.94275 1.19166 0.83836 0.96596 0.92235 1.85988 1.23251 1.43323 1.69169 1.21808 0.99808 0.85752 0.89706 0.95758 0.94362 0.93101 0.88151 0.94954 0.92547 0.77986 0.83069 0.83712 0.83931 0.83693 0.90330 0.85932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.51 37.16 0.32 -2.68 16 2 C -0.13 -3.01 5.45 -26.73 -0.15 -3.15 16 3 C 0.27 6.54 2.24 -69.08 -0.15 6.39 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 5 C -0.54 -13.70 8.73 -34.44 -0.30 -14.00 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.14 11.29 55.43 0.63 -23.52 16 9 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 10 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 N -0.70 -13.83 4.96 -56.39 -0.28 -14.11 16 14 C 0.54 10.43 6.29 -13.05 -0.08 10.35 16 15 O -0.54 -12.20 13.42 5.17 0.07 -12.13 16 16 C -0.20 -2.99 5.96 -102.37 -0.61 -3.60 16 17 C -0.03 -0.44 9.61 -36.93 -0.35 -0.80 16 18 C -0.11 -1.29 5.80 -104.97 -0.61 -1.90 16 19 C -0.10 -1.05 9.83 -39.16 -0.39 -1.44 16 20 C 0.07 0.67 7.29 -39.42 -0.29 0.39 16 21 F -0.14 -1.47 17.26 2.25 0.04 -1.43 16 22 C -0.12 -0.99 10.00 -39.38 -0.39 -1.38 16 23 C -0.12 -1.08 10.01 -39.54 -0.40 -1.48 16 24 C 0.13 1.50 6.48 -38.67 -0.25 1.25 16 25 O -0.30 -3.82 10.39 -18.57 -0.19 -4.02 16 26 C 0.10 1.27 6.57 36.00 0.24 1.50 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.04 0.80 5.64 -51.93 -0.29 0.51 16 29 H 0.05 1.18 7.84 -51.93 -0.41 0.77 16 30 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 33 H 0.39 6.50 6.59 -40.82 -0.27 6.23 16 34 H 0.15 2.10 7.61 -52.49 -0.40 1.70 16 35 H 0.15 1.30 8.06 -52.49 -0.42 0.87 16 36 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 37 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.12 1.37 6.61 -51.93 -0.34 1.02 16 LS Contribution 328.72 15.07 4.95 4.95 Total: -1.00 -29.71 328.72 -7.81 -37.52 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -4.49 Total: 6.50 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -3.51 Total: -8.89 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.35 Total: -37.63 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.12 Total: -16.15 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.71 -7.81 -37.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358055237.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.730 kcal (2) G-P(sol) polarization free energy of solvation -29.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds