Wall clock time and date at job start Tue Mar 31 2020 08:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46925 * 2 1 4 4 H 1.08995 * 109.46999 * 304.99919 * 3 2 1 5 5 C 1.50697 * 109.46998 * 184.99988 * 3 2 1 6 6 H 1.08000 * 119.99596 * 240.00448 * 5 3 2 7 7 C 1.37877 * 120.00246 * 59.99934 * 5 3 2 8 8 N 1.31510 * 119.99662 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00021 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47216 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46909 * 120.00100 * 9 7 5 12 12 H 1.48497 * 109.47109 * 239.99799 * 9 7 5 13 13 N 1.46495 * 109.46944 * 64.99774 * 3 2 1 14 14 C 1.34780 * 120.00400 * 274.99714 * 13 3 2 15 15 O 1.21715 * 119.99543 * 0.02562 * 14 13 3 16 16 C 1.46231 * 120.00242 * 180.02562 * 14 13 3 17 17 C 1.35590 * 120.14534 * 180.02562 * 16 14 13 18 18 C 1.47117 * 117.87913 * 180.93896 * 17 16 14 19 19 C 1.39457 * 121.46261 * 196.11834 * 18 17 16 20 20 C 1.38139 * 119.49826 * 179.97438 * 19 18 17 21 21 F 1.35099 * 119.85782 * 180.02562 * 20 19 18 22 22 C 1.38763 * 120.29397 * 359.97438 * 20 19 18 23 23 C 1.38253 * 120.60769 * 0.02562 * 22 20 19 24 24 C 1.38334 * 119.88963 * 0.28769 * 23 22 20 25 25 O 1.35625 * 121.27834 * 180.24200 * 24 23 22 26 26 C 1.42788 * 117.42597 * 145.73913 * 25 24 23 27 27 H 1.09003 * 109.47223 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47470 * 300.00140 * 1 2 3 29 29 H 1.09006 * 109.47334 * 60.00057 * 1 2 3 30 30 H 1.08997 * 109.46985 * 239.99930 * 2 1 3 31 31 H 1.08993 * 109.46842 * 119.99541 * 2 1 3 32 32 H 0.97006 * 119.99798 * 179.97438 * 8 7 5 33 33 H 0.97006 * 119.99915 * 95.00074 * 13 3 2 34 34 H 1.07995 * 121.06099 * 0.95154 * 17 16 14 35 35 H 1.08002 * 120.25048 * 359.92557 * 19 18 17 36 36 H 1.08000 * 119.69494 * 180.02562 * 22 20 19 37 37 H 1.08002 * 120.05077 * 180.02562 * 23 22 20 38 38 H 1.09005 * 109.30298 * 287.77382 * 26 25 24 39 39 H 1.08996 * 109.13744 * 168.28701 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8889 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 3.4062 0.3367 -2.1728 9 14 6.0050 0.8802 -1.3810 10 1 6.5988 1.5443 -0.1929 11 1 6.4962 -0.5189 -1.4625 12 1 6.4000 1.6157 -2.6090 13 7 1.6523 2.0975 1.2518 14 6 0.4350 2.6644 1.3669 15 8 -0.3424 2.6318 0.4310 16 6 0.0483 3.3187 2.6162 17 6 -1.1758 3.8895 2.7354 18 6 -1.5049 4.5523 4.0069 19 6 -2.8208 4.8680 4.3440 20 6 -3.0837 5.4901 5.5490 21 9 -4.3559 5.7987 5.8831 22 6 -2.0471 5.7984 6.4185 23 6 -0.7396 5.4892 6.0927 24 6 -0.4570 4.8721 4.8873 25 8 0.8147 4.5518 4.5414 26 6 1.0083 3.3615 3.7769 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 3.8294 -0.0611 -2.9498 33 1 2.2719 2.1232 1.9978 34 1 -1.8866 3.8584 1.9230 35 1 -3.6280 4.6287 3.6676 36 1 -2.2638 6.2844 7.3583 37 1 0.0602 5.7329 6.7763 38 1 0.8427 2.4929 4.4144 39 1 2.0307 3.3416 3.3994 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358055237.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:13 Heat of formation + Delta-G solvation = -98.820046 kcal Electronic energy + Delta-G solvation = -24300.320144 eV Core-core repulsion = 20508.048006 eV Total energy + Delta-G solvation = -3792.272138 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.89000 -41.93707 -40.58865 -38.35789 -37.06647 -35.23241 -34.36500 -32.99584 -31.63346 -31.09482 -28.98978 -26.99440 -25.82293 -24.72414 -23.83979 -22.68737 -21.42053 -20.26742 -19.28560 -18.92332 -18.25391 -17.78930 -17.40052 -16.99839 -16.74857 -16.42834 -16.27738 -16.10034 -15.64813 -15.27399 -14.99910 -14.68405 -14.47894 -14.30332 -14.08835 -13.81014 -13.51653 -13.46088 -13.18191 -12.89683 -12.72380 -12.71132 -12.52941 -12.16517 -12.06938 -11.83514 -11.60780 -11.18715 -11.05332 -10.81222 -10.54027 -9.86383 -9.66944 -9.03299 -8.16562 -6.33840 -0.73905 0.05915 0.71688 1.44656 1.46374 1.57693 2.00698 2.32535 2.35980 2.52119 2.56948 3.13170 3.15645 3.37652 3.48830 3.55135 3.91251 3.97916 4.11492 4.22304 4.32855 4.48629 4.52540 4.56378 4.72510 4.74427 4.76447 4.93495 5.03819 5.04945 5.13903 5.26407 5.28131 5.42316 5.53079 5.58682 5.59463 5.78142 5.90095 6.15526 6.16688 6.73536 6.89616 7.31294 7.48394 8.89047 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.027915 B = 0.003097 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.814747 B = 9037.931894 C = 9784.349520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.278 3.722 4 H 0.000 1.000 5 C -0.548 4.548 6 H 0.074 0.926 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.970 3.030 10 H -0.259 1.259 11 H -0.279 1.279 12 H -0.286 1.286 13 N -0.697 5.697 14 C 0.544 3.456 15 O -0.585 6.585 16 C -0.221 4.221 17 C -0.014 4.014 18 C -0.129 4.129 19 C -0.098 4.098 20 C 0.058 3.942 21 F -0.142 7.142 22 C -0.096 4.096 23 C -0.111 4.111 24 C 0.115 3.885 25 O -0.309 6.309 26 C 0.110 3.890 27 H 0.046 0.954 28 H 0.043 0.957 29 H 0.025 0.975 30 H 0.073 0.927 31 H 0.043 0.957 32 H 0.265 0.735 33 H 0.403 0.597 34 H 0.143 0.857 35 H 0.154 0.846 36 H 0.176 0.824 37 H 0.172 0.828 38 H 0.099 0.901 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.852 8.497 19.606 22.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.160 4.160 3 C 0.174 3.826 4 H 0.018 0.982 5 C -0.586 4.586 6 H 0.092 0.908 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.794 3.206 10 H -0.183 1.183 11 H -0.205 1.205 12 H -0.212 1.212 13 N -0.345 5.345 14 C 0.333 3.667 15 O -0.468 6.468 16 C -0.225 4.225 17 C -0.034 4.034 18 C -0.130 4.130 19 C -0.117 4.117 20 C 0.038 3.962 21 F -0.121 7.121 22 C -0.114 4.114 23 C -0.129 4.129 24 C 0.069 3.931 25 O -0.223 6.223 26 C 0.035 3.965 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.044 0.956 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.239 0.761 34 H 0.161 0.839 35 H 0.171 0.829 36 H 0.193 0.807 37 H 0.190 0.810 38 H 0.116 0.884 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.192 8.460 18.820 22.201 hybrid contribution 0.604 -0.290 -0.827 1.064 sum -7.588 8.170 17.993 21.168 Atomic orbital electron populations 1.21687 0.97063 0.99189 1.00213 1.21790 0.93679 0.99022 1.01508 1.18423 0.93813 0.89247 0.81080 0.98236 1.21602 0.91277 1.38927 1.06792 0.90829 1.25756 1.03261 0.94367 0.95034 1.70052 1.37003 1.38344 1.09882 0.85332 0.79188 0.77805 0.78226 1.18284 1.20483 1.21201 1.46223 1.15093 1.55409 1.17810 1.18147 0.82296 0.78777 0.87493 1.90779 1.52575 1.61711 1.41702 1.22572 0.97776 1.05384 0.96733 1.22346 0.94844 0.90745 0.95420 1.18927 0.93777 1.05442 0.94844 1.21181 0.96245 0.97795 0.96496 1.17631 0.79582 1.03223 0.95724 1.91504 1.36754 1.91321 1.92536 1.21452 0.90361 0.98940 1.00663 1.20715 0.97552 1.01107 0.93563 1.19504 0.83350 0.97134 0.93070 1.85972 1.23778 1.43530 1.69024 1.21830 0.99226 0.86510 0.88921 0.93519 0.93840 0.95572 0.90894 0.93779 0.92602 0.76082 0.83927 0.82860 0.80672 0.81021 0.88368 0.85254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.53 8.51 71.98 0.61 -4.92 16 2 C -0.12 -5.85 5.45 30.60 0.17 -5.69 16 3 C 0.28 13.95 2.24 44.25 0.10 14.05 16 4 H 0.00 -0.02 7.58 -2.39 -0.02 -0.03 16 5 C -0.55 -28.29 8.73 25.60 0.22 -28.07 16 6 H 0.07 3.54 7.74 -2.91 -0.02 3.51 16 7 C 0.02 0.85 5.29 84.66 0.45 1.29 16 8 N -0.91 -51.63 11.29 21.45 0.24 -51.38 16 9 Si 0.97 41.34 29.54 68.60 2.03 43.37 16 10 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 11 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 12 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 13 N -0.70 -27.96 4.96 -450.52 -2.24 -30.20 16 14 C 0.54 21.41 6.29 86.32 0.54 21.95 16 15 O -0.58 -27.61 13.42 -4.40 -0.06 -27.67 16 16 C -0.22 -6.63 5.96 -18.40 -0.11 -6.74 16 17 C -0.01 -0.38 9.61 23.99 0.23 -0.15 16 18 C -0.13 -2.96 5.80 -20.09 -0.12 -3.08 16 19 C -0.10 -1.92 9.83 22.54 0.22 -1.70 16 20 C 0.06 1.01 7.29 22.37 0.16 1.17 16 21 F -0.14 -2.65 17.26 44.97 0.78 -1.87 16 22 C -0.10 -1.26 10.00 22.40 0.22 -1.04 16 23 C -0.11 -1.64 10.01 22.30 0.22 -1.42 16 24 C 0.11 2.44 6.48 22.86 0.15 2.59 16 25 O -0.31 -7.14 10.39 -89.37 -0.93 -8.07 16 26 C 0.11 2.51 6.57 71.23 0.47 2.98 16 27 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.04 1.86 5.64 -2.39 -0.01 1.85 16 29 H 0.03 1.25 7.84 -2.38 -0.02 1.23 16 30 H 0.07 3.96 5.95 -2.39 -0.01 3.95 16 31 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.26 14.15 8.31 -92.70 -0.77 13.38 16 33 H 0.40 13.36 6.59 -92.70 -0.61 12.75 16 34 H 0.14 4.10 7.61 -2.91 -0.02 4.08 16 35 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 36 H 0.18 1.18 8.06 -2.91 -0.02 1.16 16 37 H 0.17 1.63 8.06 -2.91 -0.02 1.60 16 38 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 39 H 0.13 2.69 6.61 -2.39 -0.02 2.68 16 Total: -1.00 -66.33 328.72 3.85 -62.47 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: 0.49 Total: 22.11 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: 3.54 Total: -8.76 kcal Atomic # 7 Polarization: -79.59 SS G_CDS: -1.99 Total: -81.58 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -0.99 Total: -35.73 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.78 Total: -1.87 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -66.33 3.85 -62.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358055237.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.346 kcal (2) G-P(sol) polarization free energy of solvation -66.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds