Wall clock time and date at job start Tue Mar 31 2020 08:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.08007 * 119.99884 * 114.30746 * 5 3 2 7 7 C 1.37876 * 120.00513 * 294.30890 * 5 3 2 8 8 N 1.31509 * 120.00365 * 153.95580 * 7 5 3 9 9 Si 1.86803 * 119.99588 * 333.95194 * 7 5 3 10 10 H 1.48508 * 109.46963 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47436 * 299.99993 * 9 7 5 12 12 H 1.48504 * 109.47124 * 60.00159 * 9 7 5 13 13 N 1.46495 * 109.47062 * 294.28295 * 3 2 1 14 14 C 1.34776 * 120.00180 * 85.00612 * 13 3 2 15 15 O 1.21720 * 120.00225 * 359.97438 * 14 13 3 16 16 C 1.46240 * 119.99884 * 179.97438 * 14 13 3 17 17 C 1.35596 * 120.14247 * 179.97438 * 16 14 13 18 18 C 1.47118 * 117.87506 * 180.88150 * 17 16 14 19 19 C 1.39459 * 121.46010 * 196.13291 * 18 17 16 20 20 C 1.38147 * 119.49006 * 179.97438 * 19 18 17 21 21 F 1.35105 * 119.84931 * 180.02562 * 20 19 18 22 22 C 1.38751 * 120.29679 * 0.03023 * 20 19 18 23 23 C 1.38249 * 120.61380 * 0.02562 * 22 20 19 24 24 C 1.38339 * 119.88548 * 359.97438 * 23 22 20 25 25 O 1.35616 * 121.28102 * 179.97438 * 24 23 22 26 26 C 1.43086 * 117.16250 * 145.88643 * 25 24 23 27 27 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 28 28 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 30 30 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 31 31 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 32 32 H 0.96999 * 119.99871 * 354.95683 * 8 7 5 33 33 H 0.97005 * 120.00069 * 264.99241 * 13 3 2 34 34 H 1.07999 * 121.05950 * 0.85606 * 17 16 14 35 35 H 1.07990 * 120.25105 * 359.95142 * 19 18 17 36 36 H 1.08003 * 119.69478 * 179.97438 * 22 20 19 37 37 H 1.07998 * 120.06074 * 180.02562 * 23 22 20 38 38 H 1.08999 * 109.50230 * 288.35271 * 26 25 24 39 39 H 1.09007 * 109.25906 * 168.87614 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1586 1.8024 -0.6686 7 6 4.1236 0.9911 1.3055 8 7 5.3469 0.5087 1.2832 9 14 3.1765 1.0613 2.9140 10 1 4.0192 0.5166 4.0089 11 1 2.8199 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6671 2.0923 -1.2590 14 6 0.4513 2.6587 -1.3908 15 8 -0.3373 2.6300 -0.4640 16 6 0.0794 3.3077 -2.6475 17 6 -1.1432 3.8780 -2.7835 18 6 -1.4723 4.4997 -4.0756 19 6 -2.5433 5.3833 -4.2064 20 6 -2.8156 5.9442 -5.4392 21 9 -3.8510 6.8016 -5.5740 22 6 -2.0305 5.6310 -6.5395 23 6 -0.9675 4.7552 -6.4195 24 6 -0.6801 4.1840 -5.1927 25 8 0.3553 3.3210 -5.0430 26 6 1.0547 3.3501 -3.7951 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 5.8117 0.4042 0.4383 33 1 2.2954 2.1150 -1.9977 34 1 -1.8529 3.8755 -1.9694 35 1 -3.1553 5.6269 -3.3506 36 1 -2.2523 6.0748 -7.4988 37 1 -0.3620 4.5179 -7.2817 38 1 1.6468 4.2630 -3.7309 39 1 1.7193 2.4882 -3.7352 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358055238.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:15 Heat of formation + Delta-G solvation = -81.675464 kcal Electronic energy + Delta-G solvation = -24372.176181 eV Core-core repulsion = 20580.647488 eV Total energy + Delta-G solvation = -3791.528693 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.13988 -41.02982 -39.26464 -37.54843 -35.48745 -34.18959 -32.63016 -31.78740 -30.66709 -30.27214 -27.36040 -26.10242 -24.54288 -23.08067 -22.46927 -21.54033 -19.80943 -19.11897 -18.43303 -17.96375 -17.45267 -16.94030 -16.30368 -15.92808 -15.69025 -15.42864 -14.94698 -14.68096 -14.49316 -13.91926 -13.87177 -13.51792 -13.41715 -13.14309 -12.69050 -12.58366 -12.55399 -12.37773 -11.94343 -11.80012 -11.61414 -10.97026 -10.85467 -10.74595 -10.48452 -10.35153 -9.91156 -9.84767 -9.42062 -9.23736 -9.02499 -8.30885 -8.28901 -8.10961 -6.66833 -4.26390 0.14768 0.80199 1.64146 2.88600 3.28490 3.37418 3.42748 3.56692 3.61953 3.70592 3.96362 4.23505 4.33333 4.39318 4.41189 4.64004 4.81764 4.97363 5.01959 5.03684 5.19303 5.38925 5.45289 5.61683 5.69643 5.73810 6.03016 6.05534 6.08110 6.14019 6.24111 6.33951 6.64698 6.75386 6.88877 6.96690 6.99278 7.28584 7.32126 7.59150 8.18656 8.34088 8.61218 8.83374 9.38485 10.71303 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.028841 B = 0.003169 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.595909 B = 8834.312506 C = 9227.964516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.132 4.132 3 C 0.250 3.750 4 H 0.042 0.958 5 C -0.632 4.632 6 H 0.063 0.937 7 C 0.050 3.950 8 N -0.884 5.884 9 Si 1.029 2.971 10 H -0.282 1.282 11 H -0.280 1.280 12 H -0.273 1.273 13 N -0.694 5.694 14 C 0.545 3.455 15 O -0.544 6.544 16 C -0.201 4.201 17 C -0.027 4.027 18 C -0.108 4.108 19 C -0.099 4.099 20 C 0.067 3.933 21 F -0.139 7.139 22 C -0.114 4.114 23 C -0.117 4.117 24 C 0.127 3.873 25 O -0.303 6.303 26 C 0.103 3.897 27 H 0.048 0.952 28 H 0.031 0.969 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.272 0.728 33 H 0.391 0.609 34 H 0.152 0.848 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.081 0.919 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.668 8.431 -15.004 21.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.170 4.170 3 C 0.147 3.853 4 H 0.060 0.940 5 C -0.669 4.669 6 H 0.081 0.919 7 C -0.159 4.159 8 N -0.515 5.515 9 Si 0.856 3.144 10 H -0.208 1.208 11 H -0.206 1.206 12 H -0.199 1.199 13 N -0.341 5.341 14 C 0.331 3.669 15 O -0.425 6.425 16 C -0.205 4.205 17 C -0.047 4.047 18 C -0.109 4.109 19 C -0.118 4.118 20 C 0.048 3.952 21 F -0.118 7.118 22 C -0.133 4.133 23 C -0.135 4.135 24 C 0.082 3.918 25 O -0.217 6.217 26 C 0.029 3.971 27 H 0.067 0.933 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.225 0.775 34 H 0.170 0.830 35 H 0.163 0.837 36 H 0.161 0.839 37 H 0.163 0.837 38 H 0.099 0.901 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.964 7.969 -12.824 19.900 hybrid contribution 0.000 0.500 -1.845 1.912 sum -12.964 8.468 -14.670 21.330 Atomic orbital electron populations 1.21900 0.97400 0.98969 1.01930 1.22235 0.93694 0.99590 1.01522 1.19068 0.95918 0.88553 0.81746 0.93983 1.21959 0.89578 1.50375 1.04975 0.91898 1.25599 0.96586 0.91588 1.02078 1.70872 1.13862 1.36188 1.30613 0.84234 0.76082 0.77675 0.76456 1.20793 1.20636 1.19877 1.46281 1.14059 1.55434 1.18342 1.17658 0.83114 0.79436 0.86651 1.90796 1.50724 1.60350 1.40620 1.22756 0.97630 1.03334 0.96738 1.22230 0.96004 0.92026 0.94448 1.18997 0.96954 1.00806 0.94136 1.21059 0.97204 0.96580 0.96916 1.17480 0.88715 0.94440 0.94552 1.91509 1.55836 1.67906 1.96541 1.21079 0.94881 0.98823 0.98493 1.20396 0.99232 0.97080 0.96803 1.19159 0.88312 0.90679 0.93699 1.86074 1.43262 1.55618 1.36722 1.21826 0.91840 1.04572 0.78872 0.93346 0.95009 0.92971 0.93093 0.91722 0.91810 0.77483 0.83027 0.83690 0.83874 0.83652 0.90141 0.86065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.53 37.16 0.32 -2.58 16 2 C -0.13 -2.88 5.37 -26.73 -0.14 -3.03 16 3 C 0.25 5.79 1.84 -69.08 -0.13 5.66 16 4 H 0.04 1.06 6.12 -51.93 -0.32 0.75 16 5 C -0.63 -16.49 8.92 -34.44 -0.31 -16.80 16 6 H 0.06 1.70 7.96 -52.48 -0.42 1.29 16 7 C 0.05 1.37 5.15 -17.82 -0.09 1.28 16 8 N -0.88 -25.52 13.70 55.43 0.76 -24.76 16 9 Si 1.03 24.47 26.56 -169.99 -4.51 19.95 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.27 -6.16 6.34 56.52 0.36 -5.80 16 13 N -0.69 -13.37 4.97 -56.38 -0.28 -13.65 16 14 C 0.55 10.03 6.32 -13.05 -0.08 9.94 16 15 O -0.54 -11.57 13.42 5.17 0.07 -11.50 16 16 C -0.20 -2.92 5.96 -102.37 -0.61 -3.53 16 17 C -0.03 -0.36 9.61 -36.92 -0.35 -0.72 16 18 C -0.11 -1.27 5.80 -104.97 -0.61 -1.87 16 19 C -0.10 -1.01 9.83 -39.16 -0.39 -1.39 16 20 C 0.07 0.66 7.29 -39.43 -0.29 0.37 16 21 F -0.14 -1.42 17.26 2.25 0.04 -1.39 16 22 C -0.11 -0.95 10.00 -39.39 -0.39 -1.34 16 23 C -0.12 -1.05 10.01 -39.54 -0.40 -1.44 16 24 C 0.13 1.46 6.46 -38.67 -0.25 1.21 16 25 O -0.30 -3.72 10.42 -18.54 -0.19 -3.92 16 26 C 0.10 1.24 6.58 35.99 0.24 1.48 16 27 H 0.05 0.96 5.63 -51.93 -0.29 0.67 16 28 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 1.09 7.88 -51.93 -0.41 0.68 16 30 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.06 1.49 5.77 -51.93 -0.30 1.19 16 32 H 0.27 7.73 8.73 -40.82 -0.36 7.38 16 33 H 0.39 6.59 6.57 -40.82 -0.27 6.32 16 34 H 0.15 1.98 7.61 -52.49 -0.40 1.59 16 35 H 0.15 1.24 8.06 -52.49 -0.42 0.81 16 36 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 37 H 0.15 1.00 8.06 -52.49 -0.42 0.57 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.12 1.33 6.59 -51.93 -0.34 0.99 16 LS Contribution 326.02 15.07 4.91 4.91 Total: -1.00 -30.32 326.02 -7.17 -37.49 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -4.48 Total: 5.62 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -3.48 Total: -12.76 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.48 Total: -38.41 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.12 Total: -15.42 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 24.47 SS G_CDS: -4.51 Total: 19.95 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.32 -7.17 -37.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358055238.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.181 kcal (2) G-P(sol) polarization free energy of solvation -30.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds