Wall clock time and date at job start Tue Mar 31 2020 08:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47061 * 2 1 4 4 H 1.09001 * 109.47857 * 54.99670 * 3 2 1 5 5 C 1.50701 * 109.47166 * 174.99929 * 3 2 1 6 6 H 1.07992 * 120.00302 * 120.00274 * 5 3 2 7 7 C 1.37878 * 119.99614 * 299.98980 * 5 3 2 8 8 N 1.31516 * 119.99939 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99806 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47132 * 90.00723 * 9 7 5 11 11 H 1.48501 * 109.46773 * 210.00534 * 9 7 5 12 12 H 1.48504 * 109.47200 * 330.00403 * 9 7 5 13 13 N 1.46501 * 109.47079 * 294.99417 * 3 2 1 14 14 C 1.34773 * 120.00036 * 84.99939 * 13 3 2 15 15 O 1.21605 * 119.99927 * 0.02562 * 14 13 3 16 16 C 1.47481 * 120.00081 * 180.02562 * 14 13 3 17 17 C 1.39837 * 120.06196 * 179.97438 * 16 14 13 18 18 C 1.37095 * 119.93319 * 179.97438 * 17 16 14 19 19 C 1.39302 * 120.06562 * 0.02744 * 18 17 16 20 20 S 1.76193 * 119.93501 * 179.97438 * 19 18 17 21 21 C 1.81406 * 102.99678 * 180.02562 * 20 19 18 22 22 C 1.52999 * 117.49567 * 243.74382 * 21 20 19 23 23 C 1.53000 * 117.49506 * 175.08565 * 21 20 19 24 24 C 1.39300 * 120.12344 * 359.97438 * 19 18 17 25 25 C 1.37087 * 120.07025 * 359.97438 * 24 19 18 26 26 H 1.08998 * 109.47773 * 300.00727 * 1 2 3 27 27 H 1.09000 * 109.47028 * 60.00858 * 1 2 3 28 28 H 1.09000 * 109.47156 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47417 * 239.99271 * 2 1 3 30 30 H 1.09000 * 109.46335 * 119.99427 * 2 1 3 31 31 H 0.97001 * 119.99405 * 179.97438 * 8 7 5 32 32 H 0.96996 * 120.00125 * 265.00332 * 13 3 2 33 33 H 1.08002 * 120.03823 * 0.25884 * 17 16 14 34 34 H 1.08000 * 119.96410 * 180.02562 * 18 17 16 35 35 H 1.08991 * 115.55245 * 29.41746 * 21 20 19 36 36 H 1.08999 * 117.50302 * 0.02562 * 22 21 20 37 37 H 1.09005 * 117.49715 * 145.02061 * 22 21 20 38 38 H 1.09001 * 117.49624 * 214.97845 * 23 21 20 39 39 H 1.08995 * 117.50358 * 359.97438 * 23 21 20 40 40 H 1.08005 * 119.96601 * 179.97438 * 24 19 18 41 41 H 1.07997 * 120.03307 * 180.02562 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8786 1.2281 8 7 3.4060 0.3369 2.1731 9 14 6.0048 0.8814 1.3821 10 1 6.4415 2.1144 2.0851 11 1 6.4393 -0.3096 2.1553 12 1 6.6136 0.8417 0.0281 13 7 1.6525 2.0974 -1.2519 14 6 0.4352 2.6642 -1.3672 15 8 -0.3413 2.6325 -0.4319 16 6 0.0450 3.3231 -2.6276 17 6 -1.2179 3.9112 -2.7488 18 6 -1.5778 4.5233 -3.9215 19 6 -0.6870 4.5594 -4.9919 20 16 -1.1533 5.3465 -6.4977 21 6 0.3121 5.1261 -7.5441 22 6 1.0592 6.3855 -7.9876 23 6 0.2202 5.5976 -8.9967 24 6 0.5717 3.9743 -4.8740 25 6 0.9374 3.3617 -3.7034 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8898 30 1 1.8932 -0.5138 0.8901 31 1 3.8291 -0.0614 2.9497 32 1 2.2720 2.1230 -1.9978 33 1 -1.9075 3.8872 -1.9179 34 1 -2.5528 4.9781 -4.0155 35 1 0.9050 4.2345 -7.3409 36 1 0.6706 7.3464 -7.6503 37 1 2.1438 6.3222 -8.0765 38 1 0.7531 5.0162 -9.7492 39 1 -0.7208 6.0397 -9.3238 40 1 1.2602 4.0034 -5.7056 41 1 1.9135 2.9086 -3.6125 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358058166.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:20 Heat of formation + Delta-G solvation = -4.796130 kcal Electronic energy + Delta-G solvation = -21846.988934 eV Core-core repulsion = 18625.007155 eV Total energy + Delta-G solvation = -3221.981779 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.19779 -39.38132 -37.70757 -36.93142 -34.42954 -33.23143 -32.23193 -31.75325 -28.93688 -25.67463 -24.87107 -24.25527 -23.33084 -22.83885 -22.06357 -21.16059 -19.54544 -18.51031 -17.90316 -17.38549 -17.25933 -16.50365 -16.28762 -15.91451 -15.71913 -15.42469 -14.77474 -14.60481 -14.57089 -14.36128 -14.10944 -13.69826 -13.45983 -13.18818 -12.89276 -12.80738 -12.69252 -12.50050 -12.26051 -12.17110 -12.16560 -12.06931 -11.60257 -11.50499 -11.23850 -11.06622 -10.78258 -10.68185 -10.53167 -10.15646 -9.67511 -8.38038 -8.16551 -6.34229 -0.33659 0.31833 0.44212 1.32980 1.44982 1.45342 1.55969 1.87684 2.34367 2.60113 2.68769 2.82789 3.13125 3.66279 3.72456 3.79234 3.91125 3.93807 4.02604 4.26059 4.40139 4.47595 4.52739 4.55947 4.73614 4.74124 4.76397 4.91858 5.01475 5.04061 5.10412 5.14758 5.18636 5.22786 5.35506 5.42671 5.54261 5.59568 5.69677 5.78824 5.91841 6.15350 6.72965 6.94189 7.31842 7.52055 8.89001 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.019548 B = 0.003065 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.018413 B = 9132.154385 C =10203.036959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 C 0.278 3.722 4 H -0.001 1.001 5 C -0.549 4.549 6 H 0.072 0.928 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.971 3.029 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.259 1.259 13 N -0.698 5.698 14 C 0.540 3.460 15 O -0.585 6.585 16 C -0.151 4.151 17 C -0.052 4.052 18 C -0.112 4.112 19 C -0.071 4.071 20 S -0.064 6.064 21 C -0.185 4.185 22 C -0.153 4.153 23 C -0.132 4.132 24 C -0.136 4.136 25 C -0.064 4.064 26 H 0.026 0.974 27 H 0.041 0.959 28 H 0.046 0.954 29 H 0.041 0.959 30 H 0.074 0.926 31 H 0.265 0.735 32 H 0.402 0.598 33 H 0.131 0.869 34 H 0.150 0.850 35 H 0.134 0.866 36 H 0.104 0.896 37 H 0.117 0.883 38 H 0.125 0.875 39 H 0.104 0.896 40 H 0.155 0.845 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.597 9.689 -23.228 25.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.175 3.825 4 H 0.017 0.983 5 C -0.587 4.587 6 H 0.090 0.910 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.183 1.183 13 N -0.347 5.347 14 C 0.328 3.672 15 O -0.468 6.468 16 C -0.157 4.157 17 C -0.073 4.073 18 C -0.136 4.136 19 C -0.184 4.184 20 S 0.184 5.816 21 C -0.314 4.314 22 C -0.193 4.193 23 C -0.172 4.172 24 C -0.160 4.160 25 C -0.084 4.084 26 H 0.045 0.955 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.238 0.762 33 H 0.149 0.851 34 H 0.168 0.832 35 H 0.152 0.848 36 H 0.122 0.878 37 H 0.135 0.865 38 H 0.143 0.857 39 H 0.122 0.878 40 H 0.172 0.828 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.149 10.142 -22.784 25.686 hybrid contribution 2.107 -0.912 1.028 2.515 sum -4.043 9.229 -21.757 23.977 Atomic orbital electron populations 1.21682 0.97086 0.99174 1.00192 1.21784 0.93674 0.99078 1.01409 1.18416 0.93818 0.89204 0.81103 0.98300 1.21564 0.91257 1.39069 1.06833 0.90967 1.25778 1.03388 0.94303 0.94975 1.70051 1.37120 1.38266 1.09861 0.85365 0.79010 0.77408 0.78674 1.20481 1.20952 1.18299 1.46200 1.15175 1.55605 1.17720 1.18652 0.82116 0.78559 0.87827 1.90722 1.52542 1.61685 1.41871 1.20096 0.97165 1.04207 0.94237 1.21099 0.94708 0.93753 0.97768 1.20735 1.00297 1.01173 0.91358 1.22265 0.97275 1.00453 0.98455 1.85115 1.22394 1.69451 1.04661 1.24587 1.01533 1.04197 1.01066 1.23391 1.00077 0.94270 1.01570 1.23112 1.02581 1.02096 0.89363 1.21209 0.95887 1.00017 0.98852 1.21293 0.99052 0.96373 0.91700 0.95467 0.94042 0.93475 0.93980 0.90798 0.92558 0.76245 0.85072 0.83200 0.84816 0.87803 0.86480 0.85710 0.87761 0.82752 0.83736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.75 8.51 71.98 0.61 -5.13 16 2 C -0.12 -6.03 5.45 30.59 0.17 -5.86 16 3 C 0.28 14.44 2.24 44.24 0.10 14.54 16 4 H 0.00 -0.05 7.58 -2.39 -0.02 -0.07 16 5 C -0.55 -29.07 8.73 25.60 0.22 -28.85 16 6 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 7 C 0.02 0.85 5.29 84.65 0.45 1.29 16 8 N -0.91 -52.44 11.29 21.45 0.24 -52.19 16 9 Si 0.97 41.86 29.54 68.60 2.03 43.89 16 10 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 11 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 12 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 13 N -0.70 -29.70 4.97 -449.32 -2.23 -31.93 16 14 C 0.54 22.68 6.33 86.68 0.55 23.22 16 15 O -0.59 -29.01 13.47 -4.05 -0.05 -29.06 16 16 C -0.15 -4.95 5.88 -20.07 -0.12 -5.06 16 17 C -0.05 -1.56 9.56 22.39 0.21 -1.34 16 18 C -0.11 -2.69 9.75 22.26 0.22 -2.47 16 19 C -0.07 -1.57 6.13 22.78 0.14 -1.43 16 20 S -0.06 -1.13 22.13 -56.49 -1.25 -2.38 16 21 C -0.19 -2.33 5.48 30.59 0.17 -2.16 16 22 C -0.15 -1.46 10.30 30.62 0.32 -1.14 16 23 C -0.13 -1.12 10.30 30.62 0.32 -0.81 16 24 C -0.14 -2.92 9.29 22.25 0.21 -2.71 16 25 C -0.06 -1.64 9.51 22.39 0.21 -1.43 16 26 H 0.03 1.34 7.84 -2.39 -0.02 1.33 16 27 H 0.04 1.87 5.65 -2.39 -0.01 1.86 16 28 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.07 4.11 5.95 -2.39 -0.01 4.09 16 31 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 32 H 0.40 14.39 6.56 -92.71 -0.61 13.78 16 33 H 0.13 4.05 7.64 -2.91 -0.02 4.03 16 34 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 35 H 0.13 1.55 6.13 -2.39 -0.01 1.53 16 36 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.12 0.82 8.14 -2.38 -0.02 0.80 16 38 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.10 0.87 8.14 -2.39 -0.02 0.86 16 40 H 0.16 2.42 5.41 -2.91 -0.02 2.41 16 41 H 0.15 3.24 6.39 -2.91 -0.02 3.22 16 Total: -1.00 -66.97 347.57 2.94 -64.02 By element: Atomic # 1 Polarization: 26.57 SS G_CDS: 0.44 Total: 27.01 kcal Atomic # 6 Polarization: -23.12 SS G_CDS: 3.77 Total: -19.35 kcal Atomic # 7 Polarization: -82.13 SS G_CDS: -1.99 Total: -84.12 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -0.05 Total: -29.06 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Atomic # 16 Polarization: -1.13 SS G_CDS: -1.25 Total: -2.38 kcal Total: -66.97 2.94 -64.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358058166.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.226 kcal (2) G-P(sol) polarization free energy of solvation -66.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds