Wall clock time and date at job start Tue Mar 31 2020 08:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47203 * 2 1 4 4 H 1.08994 * 109.47470 * 305.72735 * 3 2 1 5 5 C 1.50703 * 109.47261 * 185.72671 * 3 2 1 6 6 H 1.07995 * 119.99973 * 265.08741 * 5 3 2 7 7 C 1.37878 * 120.00051 * 85.08360 * 5 3 2 8 8 N 1.31510 * 120.00344 * 185.01313 * 7 5 3 9 9 Si 1.86799 * 119.99597 * 5.01193 * 7 5 3 10 10 H 1.48508 * 109.46970 * 94.93217 * 9 7 5 11 11 H 1.48507 * 109.47183 * 214.92834 * 9 7 5 12 12 H 1.48497 * 109.47442 * 334.92861 * 9 7 5 13 13 N 1.46505 * 109.46947 * 65.73033 * 3 2 1 14 14 C 1.34775 * 119.99752 * 275.00125 * 13 3 2 15 15 O 1.21282 * 120.00071 * 354.63823 * 14 13 3 16 16 C 1.50703 * 119.99986 * 174.64253 * 14 13 3 17 17 H 1.08996 * 108.61858 * 337.12136 * 16 14 13 18 18 C 1.51870 * 108.66051 * 219.19938 * 16 14 13 19 19 C 1.53528 * 108.98381 * 178.44081 * 18 16 14 20 20 S 1.81610 * 107.30994 * 72.57929 * 19 18 16 21 21 C 1.76465 * 102.62623 * 313.55244 * 20 19 18 22 22 C 1.39623 * 117.72043 * 192.72316 * 21 20 19 23 23 C 1.37740 * 120.62368 * 181.40026 * 22 21 20 24 24 C 1.38345 * 119.51075 * 359.97214 * 23 22 21 25 25 C 1.37757 * 120.00815 * 359.62241 * 24 23 22 26 26 C 1.38169 * 122.29374 * 13.41680 * 21 20 19 27 27 H 1.08992 * 109.47042 * 60.00282 * 1 2 3 28 28 H 1.09004 * 109.46758 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47412 * 300.00031 * 1 2 3 30 30 H 1.08997 * 109.47233 * 239.99445 * 2 1 3 31 31 H 1.09002 * 109.47210 * 120.00271 * 2 1 3 32 32 H 0.96996 * 120.00172 * 180.02562 * 8 7 5 33 33 H 0.97000 * 120.00307 * 94.72659 * 13 3 2 34 34 H 1.09000 * 109.55423 * 298.29128 * 18 16 14 35 35 H 1.09007 * 109.55571 * 58.59057 * 18 16 14 36 36 H 1.09007 * 109.88866 * 313.12959 * 19 18 16 37 37 H 1.08998 * 109.89353 * 192.03403 * 19 18 16 38 38 H 1.08006 * 119.69313 * 1.38288 * 22 21 20 39 39 H 1.08008 * 120.24424 * 179.97438 * 23 22 21 40 40 H 1.08000 * 119.99273 * 179.62625 * 24 23 22 41 41 H 1.08005 * 119.47032 * 180.09321 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5954 1.9851 -0.8342 5 6 3.5403 1.4448 -0.1418 6 1 4.1657 1.4947 0.7373 7 6 4.1146 1.3832 -1.3938 8 7 5.4205 1.2858 -1.5142 9 14 3.0375 1.4381 -2.9190 10 1 2.9518 2.8355 -3.4144 11 1 3.6277 0.5745 -3.9731 12 1 1.6768 0.9480 -2.5820 13 7 1.6675 2.0921 1.2592 14 6 0.4517 2.6584 1.3913 15 8 -0.2970 2.7166 0.4389 16 6 0.0224 3.2196 2.7225 17 1 0.6030 2.7354 3.5077 18 6 -1.4456 2.8944 2.9363 19 6 -1.8808 3.4288 4.3082 20 16 -1.9744 5.2379 4.1785 21 6 -0.4650 5.6445 3.3597 22 6 -0.0799 6.9864 3.3364 23 6 1.0723 7.3745 2.6892 24 6 1.8530 6.4227 2.0579 25 6 1.4802 5.0968 2.0862 26 6 0.3203 4.6900 2.7424 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 5.8245 1.2428 -2.3949 33 1 2.2944 2.1111 1.9992 34 1 -2.0414 3.3666 2.1552 35 1 -1.5885 1.8143 2.9035 36 1 -1.1478 3.1488 5.0649 37 1 -2.8585 3.0248 4.5705 38 1 -0.6913 7.7271 3.8303 39 1 1.3643 8.4143 2.6747 40 1 2.7548 6.7191 1.5430 41 1 2.0969 4.3608 1.5918 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358080859.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:40 Heat of formation + Delta-G solvation = -23.719848 kcal Electronic energy + Delta-G solvation = -23309.896833 eV Core-core repulsion = 20087.094460 eV Total energy + Delta-G solvation = -3222.802373 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.31247 -38.54018 -35.82289 -34.82477 -32.46406 -31.78580 -30.82202 -30.73972 -28.13190 -26.98356 -23.24073 -22.93674 -22.62745 -21.62168 -19.96306 -19.65058 -17.77013 -17.54062 -16.21734 -16.00760 -15.91213 -15.41506 -15.03061 -14.70426 -14.14589 -13.76906 -13.54763 -13.36774 -13.25800 -12.98030 -12.83630 -12.67732 -12.53404 -12.13023 -11.88896 -11.84886 -11.45495 -11.34816 -10.98070 -10.77910 -10.76816 -10.67523 -10.20981 -10.04429 -9.86304 -9.71788 -9.29232 -9.22190 -8.74397 -8.68032 -8.10840 -7.45021 -6.26753 -4.29957 1.18154 1.33833 1.50625 2.27696 3.11568 3.22442 3.31950 3.39425 3.59861 3.89764 4.29440 4.45622 4.62559 4.71524 4.92034 5.00263 5.09310 5.13271 5.23422 5.28014 5.39055 5.50610 5.53940 5.71359 5.78603 5.96811 5.99495 6.00717 6.07061 6.16713 6.25026 6.41779 6.57137 6.58756 6.70297 6.89416 6.90957 6.92511 7.21579 7.29260 7.48342 8.06816 8.47665 8.71926 8.86954 9.35118 10.84924 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.018121 B = 0.004853 C = 0.004131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.838150 B = 5767.917013 C = 6776.601867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.127 4.127 3 C 0.238 3.762 4 H 0.052 0.948 5 C -0.533 4.533 6 H 0.078 0.922 7 C 0.083 3.917 8 N -0.889 5.889 9 Si 0.867 3.133 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.254 1.254 13 N -0.703 5.703 14 C 0.515 3.485 15 O -0.541 6.541 16 C -0.074 4.074 17 H 0.097 0.903 18 C -0.107 4.107 19 C -0.101 4.101 20 S -0.132 6.132 21 C -0.070 4.070 22 C -0.105 4.105 23 C -0.106 4.106 24 C -0.115 4.115 25 C -0.104 4.104 26 C -0.068 4.068 27 H 0.050 0.950 28 H 0.032 0.968 29 H 0.046 0.954 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.267 0.733 33 H 0.393 0.607 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.114 0.886 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.204 6.611 12.060 17.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.166 4.166 3 C 0.135 3.865 4 H 0.070 0.930 5 C -0.571 4.571 6 H 0.096 0.904 7 C -0.121 4.121 8 N -0.525 5.525 9 Si 0.693 3.307 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.178 1.178 13 N -0.351 5.351 14 C 0.299 3.701 15 O -0.419 6.419 16 C -0.096 4.096 17 H 0.115 0.885 18 C -0.146 4.146 19 C -0.249 4.249 20 S 0.110 5.890 21 C -0.182 4.182 22 C -0.128 4.128 23 C -0.126 4.126 24 C -0.135 4.135 25 C -0.124 4.124 26 C -0.075 4.075 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.227 0.773 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.111 0.889 37 H 0.132 0.868 38 H 0.143 0.857 39 H 0.145 0.855 40 H 0.146 0.854 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -12.538 7.229 11.665 18.588 hybrid contribution 1.056 -0.793 -0.969 1.638 sum -11.481 6.436 10.696 16.960 Atomic orbital electron populations 1.21885 0.97613 0.99044 1.01741 1.22132 0.93537 0.99645 1.01316 1.19191 0.95704 0.88908 0.82718 0.93032 1.20988 0.88548 1.52867 0.94719 0.90359 1.24854 0.94815 0.93638 0.98824 1.69879 1.09713 1.48595 1.24293 0.87004 0.81935 0.78807 0.82969 1.20100 1.21032 1.17760 1.46571 1.14314 1.55989 1.18272 1.20013 0.82701 0.78339 0.89063 1.90673 1.53370 1.57844 1.40038 1.20043 0.98526 0.92879 0.98110 0.88462 1.21477 0.94458 1.02772 0.95847 1.23789 1.06374 0.93871 1.00903 1.85339 1.23055 1.07668 1.72912 1.21206 0.98060 0.96127 1.02834 1.20819 0.97441 0.93593 1.00914 1.21046 0.94535 0.99558 0.97474 1.21126 1.00128 0.92909 0.99323 1.21635 0.95850 0.97357 0.97550 1.19134 0.95978 0.93116 0.99233 0.93041 0.94870 0.93535 0.92076 0.92887 0.92269 0.77296 0.88868 0.89502 0.88925 0.86812 0.85678 0.85495 0.85432 0.84531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 8.60 37.16 0.32 -2.46 16 2 C -0.13 -2.66 5.16 -26.73 -0.14 -2.80 16 3 C 0.24 5.36 1.77 -69.08 -0.12 5.24 16 4 H 0.05 1.30 5.08 -51.93 -0.26 1.03 16 5 C -0.53 -13.78 9.06 -34.44 -0.31 -14.10 16 6 H 0.08 2.13 8.02 -52.49 -0.42 1.71 16 7 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 8 N -0.89 -25.65 13.96 55.43 0.77 -24.87 16 9 Si 0.87 20.99 26.34 -169.99 -4.48 16.51 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.25 -6.01 5.98 56.52 0.34 -5.67 16 13 N -0.70 -13.19 4.02 -54.93 -0.22 -13.41 16 14 C 0.51 9.24 3.75 -10.98 -0.04 9.20 16 15 O -0.54 -11.62 13.91 5.56 0.08 -11.55 16 16 C -0.07 -1.04 2.32 -93.82 -0.22 -1.26 16 17 H 0.10 1.17 8.08 -51.93 -0.42 0.75 16 18 C -0.11 -1.32 4.74 -27.03 -0.13 -1.45 16 19 C -0.10 -1.00 6.53 37.43 0.24 -0.75 16 20 S -0.13 -1.56 21.99 -107.50 -2.36 -3.93 16 21 C -0.07 -0.96 6.05 -39.09 -0.24 -1.20 16 22 C -0.10 -1.30 9.65 -39.25 -0.38 -1.68 16 23 C -0.11 -1.27 10.06 -39.72 -0.40 -1.67 16 24 C -0.11 -1.56 10.03 -39.72 -0.40 -1.96 16 25 C -0.10 -1.62 8.95 -39.35 -0.35 -1.97 16 26 C -0.07 -1.01 5.53 -104.56 -0.58 -1.59 16 27 H 0.05 1.06 7.96 -51.93 -0.41 0.65 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.85 5.74 -51.93 -0.30 0.56 16 30 H 0.06 1.34 6.92 -51.93 -0.36 0.98 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.39 6.57 8.47 -40.82 -0.35 6.22 16 34 H 0.09 1.35 7.76 -51.93 -0.40 0.95 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.09 0.82 8.08 -51.92 -0.42 0.40 16 37 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.13 1.31 8.05 -52.48 -0.42 0.89 16 39 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 40 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 41 H 0.14 2.31 6.03 -52.48 -0.32 1.99 16 LS Contribution 335.26 15.07 5.05 5.05 Total: -1.00 -30.37 335.26 -9.81 -40.19 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -5.82 Total: 8.28 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: -2.84 Total: -16.28 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.55 Total: -38.28 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.08 Total: -11.55 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.48 Total: 16.51 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.36 Total: -3.93 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.37 -9.81 -40.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358080859.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.468 kcal (2) G-P(sol) polarization free energy of solvation -30.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds