Wall clock time and date at job start Tue Mar 31 2020 08:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46920 * 2 1 4 4 H 1.09004 * 109.46956 * 55.00484 * 3 2 1 5 5 C 1.50701 * 109.46924 * 174.99807 * 3 2 1 6 6 H 1.08005 * 119.99135 * 120.00474 * 5 3 2 7 7 C 1.37872 * 120.00681 * 300.00282 * 5 3 2 8 8 N 1.31520 * 119.99493 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00274 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46727 * 60.00554 * 9 7 5 11 11 H 1.48505 * 109.47120 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47297 * 300.00260 * 9 7 5 13 13 N 1.46494 * 109.47535 * 295.00382 * 3 2 1 14 14 C 1.34777 * 119.99907 * 84.99699 * 13 3 2 15 15 O 1.21280 * 120.00488 * 4.94274 * 14 13 3 16 16 C 1.50699 * 119.99882 * 184.94301 * 14 13 3 17 17 H 1.08997 * 108.51242 * 333.39417 * 16 14 13 18 18 C 1.51883 * 108.66415 * 215.40109 * 16 14 13 19 19 C 1.53531 * 108.96146 * 178.44169 * 18 16 14 20 20 S 1.81614 * 107.30715 * 72.62084 * 19 18 16 21 21 C 1.76456 * 102.62844 * 313.59926 * 20 19 18 22 22 C 1.39630 * 117.72265 * 192.79172 * 21 20 19 23 23 C 1.37737 * 120.62610 * 180.61554 * 22 21 20 24 24 C 1.38341 * 119.51511 * 0.28077 * 23 22 21 25 25 C 1.37769 * 120.00525 * 359.69315 * 24 23 22 26 26 C 1.38174 * 122.29963 * 13.21301 * 21 20 19 27 27 H 1.08992 * 109.47481 * 59.99803 * 1 2 3 28 28 H 1.09001 * 109.47154 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46999 * 299.99268 * 1 2 3 30 30 H 1.08998 * 109.47049 * 240.00887 * 2 1 3 31 31 H 1.08992 * 109.47481 * 120.00197 * 2 1 3 32 32 H 0.97001 * 119.99356 * 180.02562 * 8 7 5 33 33 H 0.96997 * 120.00134 * 265.00387 * 13 3 2 34 34 H 1.08996 * 109.55346 * 58.60355 * 18 16 14 35 35 H 1.08996 * 109.55649 * 298.28318 * 18 16 14 36 36 H 1.09005 * 109.89220 * 313.17376 * 19 18 16 37 37 H 1.09002 * 109.88952 * 192.07467 * 19 18 16 38 38 H 1.07997 * 119.68768 * 0.33035 * 22 21 20 39 39 H 1.08003 * 120.24769 * 180.26210 * 23 22 21 40 40 H 1.07995 * 120.00131 * 179.66462 * 24 23 22 41 41 H 1.08005 * 119.46833 * 179.87364 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8419 5 6 3.5419 1.4444 0.1239 6 1 4.1471 1.8891 -0.6523 7 6 4.1433 0.8785 1.2279 8 7 3.4062 0.3366 2.1728 9 14 6.0050 0.8801 1.3810 10 1 6.5003 2.2801 1.3808 11 1 6.3979 0.2157 2.6497 12 1 6.5966 0.1455 0.2342 13 7 1.6524 2.0976 -1.2517 14 6 0.4350 2.6645 -1.3667 15 8 -0.3052 2.7117 -0.4072 16 6 -0.0065 3.2397 -2.6878 17 1 0.8793 3.5365 -3.2494 18 6 -0.8503 4.4745 -2.4226 19 6 -1.2714 5.0887 -3.7652 20 16 -2.5302 3.9970 -4.4877 21 6 -1.8186 2.3960 -4.2782 22 6 -2.4005 1.3311 -4.9689 23 6 -1.9011 0.0540 -4.8391 24 6 -0.8162 -0.1727 -4.0111 25 6 -0.2394 0.8758 -3.3287 26 6 -0.7287 2.1739 -3.4584 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.8294 -0.0612 2.9497 33 1 2.2718 2.1233 -1.9977 34 1 -0.2667 5.2004 -1.8564 35 1 -1.7378 4.1949 -1.8550 36 1 -0.4101 5.1525 -4.4303 37 1 -1.6904 6.0819 -3.6035 38 1 -3.2530 1.5097 -5.6073 39 1 -2.3533 -0.7645 -5.3794 40 1 -0.4218 -1.1718 -3.8993 41 1 0.6060 0.6887 -2.6830 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358080861.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:42 Heat of formation + Delta-G solvation = -23.395257 kcal Electronic energy + Delta-G solvation = -23425.061989 eV Core-core repulsion = 20202.273692 eV Total energy + Delta-G solvation = -3222.788298 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.27635 -38.40323 -35.73211 -34.71178 -32.50474 -31.18706 -30.90809 -30.68413 -27.80860 -26.66128 -23.34700 -23.02123 -22.59739 -21.43047 -19.88407 -19.43408 -17.78092 -17.31683 -16.04242 -15.93667 -15.66782 -15.33016 -14.95778 -14.54885 -14.30680 -13.76539 -13.39235 -13.33367 -13.19580 -12.80179 -12.73945 -12.60881 -12.25777 -12.05699 -11.51086 -11.39436 -11.29929 -11.23684 -11.02445 -10.86393 -10.65691 -10.37269 -10.24892 -10.14136 -9.77409 -9.61457 -9.17222 -9.08832 -8.65324 -8.51724 -7.88966 -7.42428 -6.15930 -4.25827 1.19635 1.34907 1.53926 2.30881 3.22403 3.25304 3.28514 3.29308 3.63713 3.98696 4.32409 4.51789 4.68186 4.78658 4.94828 5.03588 5.15486 5.18421 5.26032 5.33055 5.40134 5.55423 5.60125 5.78797 5.82083 6.01151 6.14583 6.26606 6.33860 6.40528 6.42897 6.57302 6.60590 6.92013 6.97328 7.14981 7.30515 7.38031 7.56174 7.67166 7.85069 8.13376 8.57830 8.72624 9.03902 9.41562 10.89208 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.021304 B = 0.004258 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.019580 B = 6574.871089 C = 7179.673684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.709 5.709 14 C 0.513 3.487 15 O -0.538 6.538 16 C -0.076 4.076 17 H 0.096 0.904 18 C -0.106 4.106 19 C -0.101 4.101 20 S -0.133 6.133 21 C -0.069 4.069 22 C -0.105 4.105 23 C -0.107 4.107 24 C -0.117 4.117 25 C -0.106 4.106 26 C -0.067 4.067 27 H 0.044 0.956 28 H 0.024 0.976 29 H 0.048 0.952 30 H 0.031 0.969 31 H 0.100 0.900 32 H 0.265 0.735 33 H 0.388 0.612 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.113 0.887 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.160 3.877 -14.422 17.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.357 5.357 14 C 0.297 3.703 15 O -0.416 6.416 16 C -0.098 4.098 17 H 0.114 0.886 18 C -0.145 4.145 19 C -0.249 4.249 20 S 0.109 5.891 21 C -0.182 4.182 22 C -0.128 4.128 23 C -0.127 4.127 24 C -0.137 4.137 25 C -0.125 4.125 26 C -0.073 4.073 27 H 0.063 0.937 28 H 0.043 0.957 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.118 0.882 32 H 0.075 0.925 33 H 0.221 0.779 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.132 0.868 38 H 0.143 0.857 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.714 4.241 -13.992 17.553 hybrid contribution 2.547 -0.510 0.313 2.616 sum -7.167 3.731 -13.679 15.887 Atomic orbital electron populations 1.21945 0.98418 0.98412 1.01514 1.21942 0.92499 0.99776 1.02358 1.18808 0.94274 0.89098 0.81031 0.93166 1.21176 0.90653 1.39228 1.06348 0.92168 1.24874 0.98566 0.94760 0.95362 1.69885 1.35230 1.37428 1.09323 0.86524 0.84881 0.78314 0.77478 1.20202 1.21118 1.20168 1.46656 1.14444 1.55906 1.18733 1.19933 0.82814 0.78822 0.88706 1.90680 1.53715 1.57880 1.39296 1.20051 0.99394 0.94649 0.95665 0.88585 1.21471 1.01955 0.95545 0.95565 1.23802 1.00625 1.00711 0.99768 1.85321 1.29676 0.97449 1.76615 1.21220 0.98888 0.97048 1.00997 1.20812 1.00305 0.91806 0.99882 1.21026 0.96668 0.96200 0.98762 1.21092 0.96479 0.99192 0.96922 1.21714 1.00609 0.91668 0.98545 1.19137 0.96209 0.94794 0.97178 0.93676 0.95676 0.93237 0.95046 0.88176 0.92478 0.77923 0.89394 0.88872 0.88982 0.86832 0.85713 0.85571 0.85640 0.84270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 8.58 37.16 0.32 -2.86 16 2 C -0.13 -2.97 5.45 -26.73 -0.15 -3.12 16 3 C 0.27 6.51 2.25 -69.08 -0.16 6.36 16 4 H 0.05 1.43 7.51 -51.93 -0.39 1.04 16 5 C -0.54 -13.69 8.73 -34.44 -0.30 -13.99 16 6 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.20 11.29 55.43 0.63 -23.58 16 9 Si 0.90 20.21 29.54 -169.99 -5.02 15.19 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 13 N -0.71 -13.91 3.72 -54.93 -0.20 -14.12 16 14 C 0.51 9.71 4.13 -10.99 -0.05 9.66 16 15 O -0.54 -12.22 13.78 5.56 0.08 -12.15 16 16 C -0.08 -1.12 2.32 -93.81 -0.22 -1.33 16 17 H 0.10 1.21 8.07 -51.93 -0.42 0.79 16 18 C -0.11 -1.40 4.69 -27.02 -0.13 -1.52 16 19 C -0.10 -1.04 6.53 37.43 0.24 -0.80 16 20 S -0.13 -1.61 21.99 -107.50 -2.36 -3.98 16 21 C -0.07 -0.96 6.05 -39.09 -0.24 -1.20 16 22 C -0.11 -1.31 9.65 -39.25 -0.38 -1.69 16 23 C -0.11 -1.26 10.06 -39.73 -0.40 -1.66 16 24 C -0.12 -1.55 10.03 -39.72 -0.40 -1.95 16 25 C -0.11 -1.61 7.68 -39.35 -0.30 -1.91 16 26 C -0.07 -1.00 5.52 -104.56 -0.58 -1.58 16 27 H 0.04 0.94 3.59 -51.93 -0.19 0.75 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 1.17 7.92 -51.92 -0.41 0.76 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 32 H 0.27 6.96 8.31 -40.82 -0.34 6.63 16 33 H 0.39 6.65 8.49 -40.82 -0.35 6.31 16 34 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.09 1.42 7.75 -51.93 -0.40 1.02 16 36 H 0.09 0.85 8.08 -51.93 -0.42 0.43 16 37 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.12 1.31 8.05 -52.49 -0.42 0.89 16 39 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 40 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 41 H 0.14 2.30 5.21 -52.48 -0.27 2.03 16 LS Contribution 333.94 15.07 5.03 5.03 Total: -1.00 -29.40 333.94 -10.33 -39.72 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -5.66 Total: 9.78 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -2.82 Total: -15.90 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.42 Total: -37.69 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.08 Total: -12.15 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.36 Total: -3.98 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.40 -10.33 -39.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358080861.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.329 kcal (2) G-P(sol) polarization free energy of solvation -29.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds