Wall clock time and date at job start Tue Mar 31 2020 08:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46920 * 2 1 4 4 H 1.09004 * 109.46956 * 55.00484 * 3 2 1 5 5 C 1.50701 * 109.46924 * 174.99807 * 3 2 1 6 6 H 1.08005 * 119.99135 * 120.00474 * 5 3 2 7 7 C 1.37872 * 120.00681 * 300.00282 * 5 3 2 8 8 N 1.31520 * 119.99493 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00274 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46727 * 60.00554 * 9 7 5 11 11 H 1.48505 * 109.47120 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47297 * 300.00260 * 9 7 5 13 13 N 1.46494 * 109.47535 * 295.00382 * 3 2 1 14 14 C 1.34777 * 119.99907 * 84.99699 * 13 3 2 15 15 O 1.21280 * 120.00488 * 4.94274 * 14 13 3 16 16 C 1.50699 * 119.99882 * 184.94301 * 14 13 3 17 17 H 1.08997 * 108.51242 * 333.39417 * 16 14 13 18 18 C 1.51883 * 108.66415 * 215.40109 * 16 14 13 19 19 C 1.53531 * 108.96146 * 178.44169 * 18 16 14 20 20 S 1.81614 * 107.30715 * 72.62084 * 19 18 16 21 21 C 1.76456 * 102.62844 * 313.59926 * 20 19 18 22 22 C 1.39630 * 117.72265 * 192.79172 * 21 20 19 23 23 C 1.37737 * 120.62610 * 180.61554 * 22 21 20 24 24 C 1.38341 * 119.51511 * 0.28077 * 23 22 21 25 25 C 1.37769 * 120.00525 * 359.69315 * 24 23 22 26 26 C 1.38174 * 122.29963 * 13.21301 * 21 20 19 27 27 H 1.08992 * 109.47481 * 59.99803 * 1 2 3 28 28 H 1.09001 * 109.47154 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46999 * 299.99268 * 1 2 3 30 30 H 1.08998 * 109.47049 * 240.00887 * 2 1 3 31 31 H 1.08992 * 109.47481 * 120.00197 * 2 1 3 32 32 H 0.97001 * 119.99356 * 180.02562 * 8 7 5 33 33 H 0.96997 * 120.00134 * 265.00387 * 13 3 2 34 34 H 1.08996 * 109.55346 * 58.60355 * 18 16 14 35 35 H 1.08996 * 109.55649 * 298.28318 * 18 16 14 36 36 H 1.09005 * 109.89220 * 313.17376 * 19 18 16 37 37 H 1.09002 * 109.88952 * 192.07467 * 19 18 16 38 38 H 1.07997 * 119.68768 * 0.33035 * 22 21 20 39 39 H 1.08003 * 120.24769 * 180.26210 * 23 22 21 40 40 H 1.07995 * 120.00131 * 179.66462 * 24 23 22 41 41 H 1.08005 * 119.46833 * 179.87364 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8419 5 6 3.5419 1.4444 0.1239 6 1 4.1471 1.8891 -0.6523 7 6 4.1433 0.8785 1.2279 8 7 3.4062 0.3366 2.1728 9 14 6.0050 0.8801 1.3810 10 1 6.5003 2.2801 1.3808 11 1 6.3979 0.2157 2.6497 12 1 6.5966 0.1455 0.2342 13 7 1.6524 2.0976 -1.2517 14 6 0.4350 2.6645 -1.3667 15 8 -0.3052 2.7117 -0.4072 16 6 -0.0065 3.2397 -2.6878 17 1 0.8793 3.5365 -3.2494 18 6 -0.8503 4.4745 -2.4226 19 6 -1.2714 5.0887 -3.7652 20 16 -2.5302 3.9970 -4.4877 21 6 -1.8186 2.3960 -4.2782 22 6 -2.4005 1.3311 -4.9689 23 6 -1.9011 0.0540 -4.8391 24 6 -0.8162 -0.1727 -4.0111 25 6 -0.2394 0.8758 -3.3287 26 6 -0.7287 2.1739 -3.4584 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.8294 -0.0612 2.9497 33 1 2.2718 2.1233 -1.9977 34 1 -0.2667 5.2004 -1.8564 35 1 -1.7378 4.1949 -1.8550 36 1 -0.4101 5.1525 -4.4303 37 1 -1.6904 6.0819 -3.6035 38 1 -3.2530 1.5097 -5.6073 39 1 -2.3533 -0.7645 -5.3794 40 1 -0.4218 -1.1718 -3.8993 41 1 0.6060 0.6887 -2.6830 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358080861.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:42 Heat of formation + Delta-G solvation = -39.168560 kcal Electronic energy + Delta-G solvation = -23425.745971 eV Core-core repulsion = 20202.273692 eV Total energy + Delta-G solvation = -3223.472279 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.61522 -39.67046 -37.28104 -36.12479 -34.35928 -32.84278 -32.09716 -31.70744 -29.30579 -28.20219 -25.10829 -24.09685 -23.67502 -22.83825 -21.45369 -21.04034 -19.04651 -18.73070 -17.65008 -17.28671 -16.95809 -16.61393 -16.28970 -16.03158 -15.70470 -15.11366 -14.70956 -14.57345 -14.43518 -14.17446 -13.97566 -13.81522 -13.61547 -13.41817 -13.27065 -13.12520 -12.90059 -12.66544 -12.43595 -12.28710 -12.19108 -12.06883 -11.67426 -11.61776 -11.17990 -11.07120 -10.79335 -10.56662 -10.51391 -9.72702 -9.65100 -8.36769 -8.16246 -6.33759 0.18312 0.32487 0.62047 1.38585 1.44767 1.45904 1.53743 1.75221 2.31539 2.51250 2.75591 3.13249 3.42939 3.62479 3.72003 3.97717 4.08729 4.12794 4.18999 4.37597 4.43783 4.46325 4.52295 4.55282 4.65696 4.72927 4.74561 4.80664 5.00058 5.04695 5.08339 5.24472 5.26608 5.40692 5.42970 5.54321 5.55885 5.60234 5.77604 5.90329 5.93767 6.16155 6.73686 6.92757 7.32479 7.52356 8.88636 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.021304 B = 0.004258 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.019580 B = 6574.871089 C = 7179.673684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.117 4.117 3 C 0.279 3.721 4 H -0.002 1.002 5 C -0.548 4.548 6 H 0.071 0.929 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.968 3.032 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.265 1.265 13 N -0.704 5.704 14 C 0.515 3.485 15 O -0.581 6.581 16 C -0.065 4.065 17 H 0.120 0.880 18 C -0.105 4.105 19 C -0.091 4.091 20 S -0.133 6.133 21 C -0.082 4.082 22 C -0.109 4.109 23 C -0.099 4.099 24 C -0.124 4.124 25 C -0.128 4.128 26 C -0.085 4.085 27 H 0.054 0.946 28 H 0.044 0.956 29 H 0.020 0.980 30 H 0.043 0.957 31 H 0.071 0.929 32 H 0.264 0.736 33 H 0.402 0.598 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.111 0.889 37 H 0.139 0.861 38 H 0.146 0.854 39 H 0.160 0.840 40 H 0.139 0.861 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.021 4.209 -17.111 19.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.156 4.156 3 C 0.176 3.824 4 H 0.016 0.984 5 C -0.586 4.586 6 H 0.089 0.911 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.793 3.207 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.189 1.189 13 N -0.353 5.353 14 C 0.301 3.699 15 O -0.461 6.461 16 C -0.087 4.087 17 H 0.138 0.862 18 C -0.144 4.144 19 C -0.239 4.239 20 S 0.109 5.891 21 C -0.195 4.195 22 C -0.132 4.132 23 C -0.118 4.118 24 C -0.144 4.144 25 C -0.148 4.148 26 C -0.091 4.091 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.039 0.961 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.237 0.763 34 H 0.112 0.888 35 H 0.086 0.914 36 H 0.129 0.871 37 H 0.157 0.843 38 H 0.163 0.837 39 H 0.177 0.823 40 H 0.157 0.843 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.569 4.586 -16.728 19.810 hybrid contribution 2.426 -0.608 1.141 2.749 sum -7.143 3.978 -15.586 17.601 Atomic orbital electron populations 1.21803 0.97312 0.99331 1.00568 1.21752 0.93378 0.99103 1.01369 1.18361 0.93630 0.89094 0.81340 0.98433 1.21534 0.91405 1.38996 1.06702 0.91070 1.25732 1.03117 0.94376 0.95029 1.70046 1.37081 1.38283 1.09842 0.85462 0.79329 0.78407 0.77525 1.19725 1.21314 1.18938 1.46403 1.15351 1.55839 1.17659 1.20662 0.81716 0.77636 0.89887 1.90662 1.54714 1.59401 1.41366 1.20022 1.00680 0.95043 0.92926 0.86200 1.21429 1.00697 0.95121 0.97149 1.23865 1.00946 1.01062 0.98000 1.85299 1.30447 0.96932 1.76439 1.21463 0.98515 0.98517 1.00967 1.21177 1.00629 0.91743 0.99629 1.21399 0.95650 0.96990 0.97805 1.21339 0.96916 0.99334 0.96853 1.21682 1.00899 0.92673 0.99510 1.19149 0.97181 0.94620 0.98182 0.92708 0.93687 0.96053 0.93844 0.91066 0.92641 0.76266 0.88830 0.91422 0.87077 0.84288 0.83653 0.82279 0.84286 0.86142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.98 8.58 71.98 0.62 -5.36 16 2 C -0.12 -5.65 5.45 30.60 0.17 -5.48 16 3 C 0.28 13.99 2.25 44.25 0.10 14.09 16 4 H 0.00 -0.13 7.51 -2.38 -0.02 -0.15 16 5 C -0.55 -28.38 8.73 25.60 0.22 -28.16 16 6 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 7 C 0.02 0.94 5.29 84.65 0.45 1.39 16 8 N -0.91 -51.79 11.29 21.45 0.24 -51.55 16 9 Si 0.97 41.48 29.54 68.60 2.03 43.50 16 10 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 11 H -0.29 -12.31 7.11 99.48 0.71 -11.61 16 12 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 13 N -0.70 -28.09 3.72 -446.09 -1.66 -29.75 16 14 C 0.51 19.83 4.13 87.66 0.36 20.19 16 15 O -0.58 -27.56 13.78 -3.03 -0.04 -27.60 16 16 C -0.07 -1.87 2.32 -12.86 -0.03 -1.90 16 17 H 0.12 2.79 8.07 -2.39 -0.02 2.77 16 18 C -0.10 -2.65 4.69 30.40 0.14 -2.50 16 19 C -0.09 -1.64 6.53 72.16 0.47 -1.17 16 20 S -0.13 -2.95 21.99 -56.49 -1.24 -4.19 16 21 C -0.08 -2.14 6.05 22.59 0.14 -2.00 16 22 C -0.11 -2.44 9.65 22.49 0.22 -2.22 16 23 C -0.10 -2.05 10.06 22.18 0.22 -1.83 16 24 C -0.12 -3.08 10.03 22.18 0.22 -2.86 16 25 C -0.13 -3.80 7.68 22.42 0.17 -3.63 16 26 C -0.08 -2.45 5.52 -19.82 -0.11 -2.56 16 27 H 0.05 2.34 3.59 -2.39 -0.01 2.33 16 28 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.02 1.03 7.92 -2.38 -0.02 1.01 16 30 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.07 3.89 5.95 -2.39 -0.01 3.87 16 32 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 33 H 0.40 13.70 8.49 -92.71 -0.79 12.91 16 34 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.07 2.07 7.75 -2.39 -0.02 2.05 16 36 H 0.11 1.66 8.08 -2.38 -0.02 1.64 16 37 H 0.14 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.15 2.59 8.05 -2.91 -0.02 2.57 16 39 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 40 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 41 H 0.12 3.98 5.21 -2.91 -0.02 3.96 16 Total: -1.00 -66.18 333.94 2.95 -63.24 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: 0.26 Total: 30.36 kcal Atomic # 6 Polarization: -27.37 SS G_CDS: 3.36 Total: -24.01 kcal Atomic # 7 Polarization: -79.87 SS G_CDS: -1.42 Total: -81.29 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -0.04 Total: -27.60 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.50 kcal Atomic # 16 Polarization: -2.95 SS G_CDS: -1.24 Total: -4.19 kcal Total: -66.18 2.95 -63.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358080861.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.067 kcal (2) G-P(sol) polarization free energy of solvation -66.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds