Wall clock time and date at job start Tue Mar 31 2020 08:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46936 * 2 1 4 4 H 1.09005 * 109.47116 * 304.99921 * 3 2 1 5 5 C 1.50702 * 109.47343 * 184.99848 * 3 2 1 6 6 H 1.07997 * 120.00363 * 239.99813 * 5 3 2 7 7 C 1.37880 * 119.99798 * 59.99584 * 5 3 2 8 8 N 1.31524 * 120.00048 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99969 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47099 * 90.00269 * 9 7 5 11 11 H 1.48497 * 109.47158 * 210.00058 * 9 7 5 12 12 H 1.48496 * 109.47079 * 330.00124 * 9 7 5 13 13 N 1.46498 * 109.47630 * 64.99802 * 3 2 1 14 14 C 1.34786 * 119.99847 * 275.00476 * 13 3 2 15 15 O 1.21281 * 120.00132 * 4.42433 * 14 13 3 16 16 C 1.50703 * 119.99615 * 184.42837 * 14 13 3 17 17 H 1.08996 * 108.62371 * 22.97307 * 16 14 13 18 18 C 1.51875 * 108.55952 * 140.97312 * 16 14 13 19 19 C 1.53519 * 108.96939 * 181.53500 * 18 16 14 20 20 S 1.81606 * 107.31973 * 287.41795 * 19 18 16 21 21 C 1.76459 * 102.63457 * 46.40452 * 20 19 18 22 22 C 1.39630 * 117.72769 * 167.34371 * 21 20 19 23 23 C 1.37737 * 120.62432 * 178.56886 * 22 21 20 24 24 C 1.38348 * 119.51497 * 0.05490 * 23 22 21 25 25 C 1.37760 * 120.00645 * 0.36644 * 24 23 22 26 26 C 1.38178 * 122.29475 * 346.63783 * 21 20 19 27 27 H 1.09002 * 109.46873 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47194 * 300.00185 * 1 2 3 29 29 H 1.08994 * 109.47276 * 60.00622 * 1 2 3 30 30 H 1.08992 * 109.47209 * 239.99511 * 2 1 3 31 31 H 1.09004 * 109.47239 * 119.99336 * 2 1 3 32 32 H 0.96991 * 119.99755 * 179.97438 * 8 7 5 33 33 H 0.96997 * 120.00237 * 94.99994 * 13 3 2 34 34 H 1.09006 * 109.55615 * 301.38269 * 18 16 14 35 35 H 1.09004 * 109.55973 * 61.68555 * 18 16 14 36 36 H 1.08998 * 109.89007 * 167.96302 * 19 18 16 37 37 H 1.09003 * 109.95105 * 46.90284 * 19 18 16 38 38 H 1.08002 * 119.68499 * 358.57717 * 22 21 20 39 39 H 1.07997 * 120.24581 * 180.02562 * 23 22 21 40 40 H 1.08002 * 119.99492 * 180.33964 * 24 23 22 41 41 H 1.08004 * 119.47089 * 179.91332 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8890 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8801 -1.3811 10 1 6.5539 -0.3518 -0.7597 11 1 6.3835 0.9215 -2.8164 12 1 6.5575 2.0721 -0.6889 13 7 1.6524 2.0976 1.2517 14 6 0.4350 2.6645 1.3668 15 8 -0.3690 2.5630 0.4645 16 6 0.0728 3.4244 2.6168 17 1 0.9914 3.7542 3.1021 18 6 -0.7346 4.6485 2.2215 19 6 -1.0759 5.4507 3.4852 20 16 -2.3424 4.5174 4.3924 21 6 -1.6997 2.8741 4.3716 22 6 -2.2927 1.9339 5.2167 23 6 -1.8578 0.6271 5.2272 24 6 -0.8227 0.2465 4.3919 25 6 -0.2297 1.1735 3.5632 26 6 -0.6563 2.4998 3.5467 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5137 0.8901 32 1 3.8293 -0.0604 -2.9501 33 1 2.2718 2.1233 1.9977 34 1 -0.1486 5.2686 1.5429 35 1 -1.6549 4.3351 1.7287 36 1 -1.4645 6.4307 3.2086 37 1 -0.1860 5.5661 4.1040 38 1 -3.1001 2.2343 5.8681 39 1 -2.3211 -0.0951 5.8830 40 1 -0.4792 -0.7775 4.3899 41 1 0.5786 0.8673 2.9157 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358080863.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:44 Heat of formation + Delta-G solvation = -23.074854 kcal Electronic energy + Delta-G solvation = -23339.196965 eV Core-core repulsion = 20116.422561 eV Total energy + Delta-G solvation = -3222.774404 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.25971 -38.43685 -35.71392 -34.69334 -32.49172 -31.25896 -30.83737 -30.70077 -27.79405 -26.65796 -23.34193 -23.00858 -22.63203 -21.45057 -19.89213 -19.39937 -17.77148 -17.32418 -16.03797 -15.95124 -15.67370 -15.30975 -14.96212 -14.58200 -14.29951 -13.75358 -13.42556 -13.37132 -13.21667 -12.81322 -12.71992 -12.64372 -12.27578 -11.91780 -11.51166 -11.40536 -11.31928 -11.24102 -11.02674 -10.86202 -10.66201 -10.37112 -10.23717 -10.12891 -9.73593 -9.61778 -9.14148 -9.08239 -8.66177 -8.52575 -7.87958 -7.43368 -6.16264 -4.26186 1.18220 1.32951 1.53106 2.30235 3.20998 3.25246 3.28771 3.30370 3.61996 3.98958 4.32077 4.51337 4.68044 4.78491 4.93382 5.02189 5.15185 5.18089 5.24319 5.32912 5.38549 5.53690 5.59937 5.78087 5.80891 5.98727 6.14120 6.24736 6.38050 6.40681 6.46416 6.54641 6.65731 6.89669 7.02228 7.17814 7.32955 7.40240 7.57610 7.68543 7.85476 8.14248 8.58497 8.72312 9.04484 9.41343 10.88874 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.020934 B = 0.004181 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.236506 B = 6695.649200 C = 7254.808664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.048 0.952 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.708 5.708 14 C 0.511 3.489 15 O -0.536 6.536 16 C -0.076 4.076 17 H 0.097 0.903 18 C -0.107 4.107 19 C -0.101 4.101 20 S -0.132 6.132 21 C -0.069 4.069 22 C -0.104 4.104 23 C -0.107 4.107 24 C -0.116 4.116 25 C -0.104 4.104 26 C -0.065 4.065 27 H 0.020 0.980 28 H 0.045 0.955 29 H 0.048 0.952 30 H 0.098 0.902 31 H 0.030 0.970 32 H 0.265 0.735 33 H 0.388 0.612 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.114 0.886 37 H 0.092 0.908 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.848 5.108 14.360 17.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.728 3.272 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.357 5.357 14 C 0.295 3.705 15 O -0.413 6.413 16 C -0.097 4.097 17 H 0.114 0.886 18 C -0.146 4.146 19 C -0.249 4.249 20 S 0.110 5.890 21 C -0.182 4.182 22 C -0.127 4.127 23 C -0.127 4.127 24 C -0.137 4.137 25 C -0.124 4.124 26 C -0.071 4.071 27 H 0.039 0.961 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.117 0.883 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.220 0.780 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.132 0.868 37 H 0.110 0.890 38 H 0.143 0.857 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.396 5.503 13.935 17.685 hybrid contribution 2.523 -0.628 -0.307 2.618 sum -6.873 4.875 13.628 16.023 Atomic orbital electron populations 1.21914 0.98178 0.97986 1.01659 1.21934 0.92686 0.99717 1.02225 1.18805 0.94189 0.89264 0.80784 0.93421 1.21220 0.90659 1.39168 1.06331 0.92113 1.24881 0.98570 0.94771 0.95366 1.69896 1.35134 1.37487 1.09320 0.86466 0.84897 0.78452 0.77407 1.20534 1.21065 1.19883 1.46663 1.14497 1.55942 1.18557 1.19925 0.83011 0.79968 0.87568 1.90688 1.49205 1.60286 1.41134 1.20065 0.99675 0.95234 0.94772 0.88554 1.21472 1.02502 0.94480 0.96097 1.23796 1.00641 1.01208 0.99255 1.85326 1.32551 1.00006 1.71119 1.21229 0.99415 0.97245 1.00300 1.20820 1.00351 0.92830 0.98719 1.21022 0.97119 0.95433 0.99133 1.21084 0.96625 0.99665 0.96292 1.21590 1.00283 0.92135 0.98412 1.19164 0.96702 0.94876 0.96405 0.96051 0.93647 0.93246 0.88335 0.95133 0.92534 0.77956 0.89366 0.88865 0.86821 0.88961 0.85689 0.85554 0.85642 0.84770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.47 37.16 0.31 -2.79 16 2 C -0.13 -3.00 5.45 -26.73 -0.15 -3.15 16 3 C 0.27 6.56 2.24 -69.08 -0.15 6.41 16 4 H 0.05 1.35 7.65 -51.93 -0.40 0.95 16 5 C -0.54 -13.68 8.73 -34.44 -0.30 -13.98 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 7 C 0.07 1.77 5.29 -17.81 -0.09 1.67 16 8 N -0.88 -24.22 11.30 55.43 0.63 -23.59 16 9 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 13 N -0.71 -13.88 4.00 -54.93 -0.22 -14.10 16 14 C 0.51 9.62 4.09 -10.98 -0.04 9.58 16 15 O -0.54 -12.05 13.11 5.56 0.07 -11.98 16 16 C -0.08 -1.11 2.32 -93.81 -0.22 -1.33 16 17 H 0.10 1.22 8.08 -51.93 -0.42 0.80 16 18 C -0.11 -1.40 4.73 -27.03 -0.13 -1.53 16 19 C -0.10 -1.05 6.52 37.43 0.24 -0.80 16 20 S -0.13 -1.60 21.99 -107.50 -2.36 -3.96 16 21 C -0.07 -0.96 6.05 -39.08 -0.24 -1.19 16 22 C -0.10 -1.28 9.65 -39.25 -0.38 -1.66 16 23 C -0.11 -1.24 10.06 -39.72 -0.40 -1.64 16 24 C -0.12 -1.51 10.03 -39.72 -0.40 -1.91 16 25 C -0.10 -1.57 8.44 -39.35 -0.33 -1.90 16 26 C -0.07 -0.96 5.53 -104.56 -0.58 -1.54 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.04 0.98 4.60 -51.93 -0.24 0.74 16 29 H 0.05 1.18 7.80 -51.93 -0.41 0.77 16 30 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 31 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 33 H 0.39 6.66 8.45 -40.82 -0.34 6.31 16 34 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.09 1.42 7.75 -51.93 -0.40 1.01 16 36 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.09 0.86 8.08 -51.93 -0.42 0.44 16 38 H 0.13 1.30 8.05 -52.49 -0.42 0.88 16 39 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 40 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 41 H 0.13 2.16 5.63 -52.48 -0.30 1.87 16 LS Contribution 335.62 15.07 5.06 5.06 Total: -1.00 -29.37 335.62 -10.43 -39.80 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -5.73 Total: 9.37 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -2.85 Total: -15.76 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: 0.41 Total: -37.70 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.07 Total: -11.98 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.36 Total: -3.96 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.37 -10.43 -39.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358080863.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.723 kcal (2) G-P(sol) polarization free energy of solvation -29.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds