Wall clock time and date at job start Tue Mar 31 2020 08:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46936 * 2 1 4 4 H 1.09005 * 109.47116 * 304.99921 * 3 2 1 5 5 C 1.50702 * 109.47343 * 184.99848 * 3 2 1 6 6 H 1.07997 * 120.00363 * 239.99813 * 5 3 2 7 7 C 1.37880 * 119.99798 * 59.99584 * 5 3 2 8 8 N 1.31524 * 120.00048 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99969 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47099 * 90.00269 * 9 7 5 11 11 H 1.48497 * 109.47158 * 210.00058 * 9 7 5 12 12 H 1.48496 * 109.47079 * 330.00124 * 9 7 5 13 13 N 1.46498 * 109.47630 * 64.99802 * 3 2 1 14 14 C 1.34786 * 119.99847 * 275.00476 * 13 3 2 15 15 O 1.21281 * 120.00132 * 4.42433 * 14 13 3 16 16 C 1.50703 * 119.99615 * 184.42837 * 14 13 3 17 17 H 1.08996 * 108.62371 * 22.97307 * 16 14 13 18 18 C 1.51875 * 108.55952 * 140.97312 * 16 14 13 19 19 C 1.53519 * 108.96939 * 181.53500 * 18 16 14 20 20 S 1.81606 * 107.31973 * 287.41795 * 19 18 16 21 21 C 1.76459 * 102.63457 * 46.40452 * 20 19 18 22 22 C 1.39630 * 117.72769 * 167.34371 * 21 20 19 23 23 C 1.37737 * 120.62432 * 178.56886 * 22 21 20 24 24 C 1.38348 * 119.51497 * 0.05490 * 23 22 21 25 25 C 1.37760 * 120.00645 * 0.36644 * 24 23 22 26 26 C 1.38178 * 122.29475 * 346.63783 * 21 20 19 27 27 H 1.09002 * 109.46873 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47194 * 300.00185 * 1 2 3 29 29 H 1.08994 * 109.47276 * 60.00622 * 1 2 3 30 30 H 1.08992 * 109.47209 * 239.99511 * 2 1 3 31 31 H 1.09004 * 109.47239 * 119.99336 * 2 1 3 32 32 H 0.96991 * 119.99755 * 179.97438 * 8 7 5 33 33 H 0.96997 * 120.00237 * 94.99994 * 13 3 2 34 34 H 1.09006 * 109.55615 * 301.38269 * 18 16 14 35 35 H 1.09004 * 109.55973 * 61.68555 * 18 16 14 36 36 H 1.08998 * 109.89007 * 167.96302 * 19 18 16 37 37 H 1.09003 * 109.95105 * 46.90284 * 19 18 16 38 38 H 1.08002 * 119.68499 * 358.57717 * 22 21 20 39 39 H 1.07997 * 120.24581 * 180.02562 * 23 22 21 40 40 H 1.08002 * 119.99492 * 180.33964 * 24 23 22 41 41 H 1.08004 * 119.47089 * 179.91332 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8890 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8801 -1.3811 10 1 6.5539 -0.3518 -0.7597 11 1 6.3835 0.9215 -2.8164 12 1 6.5575 2.0721 -0.6889 13 7 1.6524 2.0976 1.2517 14 6 0.4350 2.6645 1.3668 15 8 -0.3690 2.5630 0.4645 16 6 0.0728 3.4244 2.6168 17 1 0.9914 3.7542 3.1021 18 6 -0.7346 4.6485 2.2215 19 6 -1.0759 5.4507 3.4852 20 16 -2.3424 4.5174 4.3924 21 6 -1.6997 2.8741 4.3716 22 6 -2.2927 1.9339 5.2167 23 6 -1.8578 0.6271 5.2272 24 6 -0.8227 0.2465 4.3919 25 6 -0.2297 1.1735 3.5632 26 6 -0.6563 2.4998 3.5467 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5137 0.8901 32 1 3.8293 -0.0604 -2.9501 33 1 2.2718 2.1233 1.9977 34 1 -0.1486 5.2686 1.5429 35 1 -1.6549 4.3351 1.7287 36 1 -1.4645 6.4307 3.2086 37 1 -0.1860 5.5661 4.1040 38 1 -3.1001 2.2343 5.8681 39 1 -2.3211 -0.0951 5.8830 40 1 -0.4792 -0.7775 4.3899 41 1 0.5786 0.8673 2.9157 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358080863.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:43 Heat of formation + Delta-G solvation = -38.763997 kcal Electronic energy + Delta-G solvation = -23339.877298 eV Core-core repulsion = 20116.422561 eV Total energy + Delta-G solvation = -3223.454736 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.59028 -39.69838 -37.24639 -36.12283 -34.34094 -32.88179 -32.05210 -31.71836 -29.29405 -28.20523 -25.09443 -24.10090 -23.69638 -22.85553 -21.44109 -21.02920 -19.02959 -18.72946 -17.63141 -17.29631 -16.97575 -16.59991 -16.26680 -16.06300 -15.71632 -15.11004 -14.69053 -14.62362 -14.47612 -14.18183 -13.91446 -13.81951 -13.58187 -13.41022 -13.26475 -13.13042 -12.89944 -12.67883 -12.44328 -12.30628 -12.18851 -12.05215 -11.68219 -11.57765 -11.17440 -11.06131 -10.78173 -10.56929 -10.50133 -9.74106 -9.64410 -8.37146 -8.16595 -6.34051 0.18232 0.31961 0.61718 1.38221 1.44381 1.45037 1.55122 1.76144 2.31847 2.51065 2.75494 3.13030 3.42804 3.63054 3.71904 3.96898 4.08309 4.12450 4.18037 4.37358 4.43437 4.47847 4.51607 4.57543 4.65285 4.73017 4.76292 4.80224 4.98934 5.06066 5.07693 5.25388 5.26703 5.41063 5.44155 5.54652 5.55007 5.60377 5.77999 5.90683 5.93264 6.16172 6.73731 6.93579 7.32461 7.52851 8.88556 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.020934 B = 0.004181 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.236506 B = 6695.649200 C = 7254.808664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.118 4.118 3 C 0.281 3.719 4 H -0.003 1.003 5 C -0.547 4.547 6 H 0.072 0.928 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.968 3.032 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.703 5.703 14 C 0.513 3.487 15 O -0.577 6.577 16 C -0.065 4.065 17 H 0.119 0.881 18 C -0.105 4.105 19 C -0.091 4.091 20 S -0.133 6.133 21 C -0.083 4.083 22 C -0.108 4.108 23 C -0.100 4.100 24 C -0.123 4.123 25 C -0.127 4.127 26 C -0.083 4.083 27 H 0.040 0.960 28 H 0.050 0.950 29 H 0.022 0.978 30 H 0.070 0.930 31 H 0.040 0.960 32 H 0.264 0.736 33 H 0.402 0.598 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.139 0.861 37 H 0.110 0.890 38 H 0.146 0.854 39 H 0.160 0.840 40 H 0.141 0.859 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.621 5.647 16.950 19.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.157 4.157 3 C 0.178 3.822 4 H 0.015 0.985 5 C -0.585 4.585 6 H 0.090 0.910 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.793 3.207 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.189 1.189 13 N -0.352 5.352 14 C 0.299 3.701 15 O -0.457 6.457 16 C -0.086 4.086 17 H 0.137 0.863 18 C -0.144 4.144 19 C -0.239 4.239 20 S 0.109 5.891 21 C -0.195 4.195 22 C -0.131 4.131 23 C -0.119 4.119 24 C -0.143 4.143 25 C -0.147 4.147 26 C -0.090 4.090 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.041 0.959 30 H 0.088 0.912 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.237 0.763 34 H 0.111 0.889 35 H 0.087 0.913 36 H 0.157 0.843 37 H 0.129 0.871 38 H 0.164 0.836 39 H 0.178 0.822 40 H 0.159 0.841 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.164 6.059 16.569 19.880 hybrid contribution 2.372 -0.799 -1.102 2.735 sum -6.791 5.260 15.468 17.693 Atomic orbital electron populations 1.21749 0.97118 0.98815 1.00601 1.21764 0.93507 0.99239 1.01196 1.18357 0.93584 0.89125 0.81177 0.98487 1.21563 0.91366 1.38930 1.06659 0.91033 1.25741 1.03129 0.94384 0.95034 1.70052 1.37020 1.38347 1.09864 0.85401 0.79320 0.78852 0.77103 1.19785 1.21371 1.18870 1.46409 1.15390 1.55925 1.17501 1.20640 0.81861 0.79119 0.88443 1.90669 1.50255 1.61679 1.43090 1.20026 1.01058 0.95099 0.92452 0.86342 1.21429 1.01144 0.94281 0.97566 1.23854 1.01042 1.01360 0.97635 1.85299 1.33345 0.99309 1.71107 1.21469 0.99086 0.98587 1.00401 1.21184 1.00534 0.92940 0.98458 1.21402 0.96093 0.95843 0.98562 1.21343 0.96886 1.00076 0.96034 1.21580 1.00753 0.92951 0.99378 1.19167 0.97720 0.94860 0.97230 0.94134 0.93060 0.95880 0.91160 0.94085 0.92644 0.76330 0.88929 0.91345 0.84315 0.87115 0.83643 0.82237 0.84144 0.86571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.74 8.47 71.98 0.61 -5.13 16 2 C -0.12 -5.77 5.45 30.59 0.17 -5.60 16 3 C 0.28 14.07 2.24 44.25 0.10 14.17 16 4 H 0.00 -0.17 7.65 -2.38 -0.02 -0.18 16 5 C -0.55 -28.26 8.73 25.60 0.22 -28.03 16 6 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 7 C 0.02 0.92 5.29 84.65 0.45 1.37 16 8 N -0.91 -51.77 11.30 21.45 0.24 -51.53 16 9 Si 0.97 41.42 29.54 68.60 2.03 43.45 16 10 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 11 H -0.29 -12.36 7.11 99.48 0.71 -11.66 16 12 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 13 N -0.70 -28.04 4.00 -446.07 -1.78 -29.83 16 14 C 0.51 19.69 4.09 87.66 0.36 20.04 16 15 O -0.58 -27.05 13.11 -3.03 -0.04 -27.09 16 16 C -0.07 -1.86 2.32 -12.86 -0.03 -1.89 16 17 H 0.12 2.80 8.08 -2.39 -0.02 2.78 16 18 C -0.11 -2.67 4.73 30.40 0.14 -2.52 16 19 C -0.09 -1.66 6.52 72.16 0.47 -1.19 16 20 S -0.13 -2.94 21.99 -56.49 -1.24 -4.18 16 21 C -0.08 -2.14 6.05 22.59 0.14 -2.01 16 22 C -0.11 -2.39 9.65 22.49 0.22 -2.18 16 23 C -0.10 -2.02 10.06 22.18 0.22 -1.80 16 24 C -0.12 -2.99 10.03 22.18 0.22 -2.76 16 25 C -0.13 -3.72 8.44 22.42 0.19 -3.53 16 26 C -0.08 -2.39 5.53 -19.82 -0.11 -2.50 16 27 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.05 2.27 4.60 -2.38 -0.01 2.25 16 29 H 0.02 1.13 7.80 -2.39 -0.02 1.11 16 30 H 0.07 3.86 5.95 -2.39 -0.01 3.85 16 31 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 33 H 0.40 13.72 8.45 -92.71 -0.78 12.93 16 34 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 35 H 0.07 2.09 7.75 -2.38 -0.02 2.07 16 36 H 0.14 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.11 1.68 8.08 -2.39 -0.02 1.66 16 38 H 0.15 2.56 8.05 -2.91 -0.02 2.54 16 39 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 40 H 0.14 2.86 8.06 -2.91 -0.02 2.84 16 41 H 0.12 3.76 5.63 -2.91 -0.02 3.74 16 Total: -1.00 -65.78 335.62 2.83 -62.95 By element: Atomic # 1 Polarization: 29.54 SS G_CDS: 0.26 Total: 29.80 kcal Atomic # 6 Polarization: -26.94 SS G_CDS: 3.37 Total: -23.57 kcal Atomic # 7 Polarization: -79.82 SS G_CDS: -1.54 Total: -81.36 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.04 Total: -27.09 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Atomic # 16 Polarization: -2.94 SS G_CDS: -1.24 Total: -4.18 kcal Total: -65.78 2.83 -62.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358080863.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.183 kcal (2) G-P(sol) polarization free energy of solvation -65.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds