Wall clock time and date at job start Tue Mar 31 2020 08:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47297 * 2 1 4 4 H 1.09002 * 109.46903 * 307.13444 * 3 2 1 5 5 S 1.81400 * 109.47378 * 67.13910 * 3 2 1 6 6 C 1.76203 * 102.99794 * 187.74971 * 5 3 2 7 7 C 1.38965 * 120.08227 * 5.17965 * 6 5 3 8 8 C 1.38083 * 119.91956 * 179.76412 * 7 6 5 9 9 C 1.38304 * 120.07615 * 0.49040 * 8 7 6 10 10 C 1.38294 * 120.16147 * 359.76380 * 9 8 7 11 11 C 1.38076 * 120.08524 * 0.02562 * 10 9 8 12 12 C 1.50704 * 109.47124 * 187.14329 * 3 2 1 13 13 O 1.21294 * 119.99377 * 265.00080 * 12 3 2 14 14 N 1.34777 * 120.00285 * 84.99426 * 12 3 2 15 15 C 1.37096 * 120.00006 * 180.02562 * 14 12 3 16 16 H 1.07995 * 119.99931 * 217.74668 * 15 14 12 17 17 C 1.38946 * 119.99875 * 37.73839 * 15 14 12 18 18 N 1.31416 * 120.00316 * 211.37082 * 17 15 14 19 19 Si 1.86805 * 119.99873 * 31.37808 * 17 15 14 20 20 H 1.48502 * 109.47111 * 94.64489 * 19 17 15 21 21 H 1.48502 * 109.47082 * 214.63959 * 19 17 15 22 22 H 1.48495 * 109.47384 * 334.63960 * 19 17 15 23 23 C 1.46502 * 120.00034 * 0.02562 * 14 12 3 24 24 C 1.52996 * 117.49678 * 190.83204 * 23 14 12 25 25 C 1.52997 * 117.49843 * 122.17171 * 23 14 12 26 26 H 1.09001 * 109.46763 * 54.45687 * 1 2 3 27 27 H 1.08997 * 109.46663 * 294.45813 * 1 2 3 28 28 H 1.08998 * 109.47214 * 174.46054 * 1 2 3 29 29 H 1.09000 * 109.46857 * 119.99995 * 2 1 3 30 30 H 1.08998 * 109.46800 * 239.99768 * 2 1 3 31 31 H 1.08002 * 120.04349 * 0.02562 * 7 6 5 32 32 H 1.08006 * 119.96227 * 180.22813 * 8 7 6 33 33 H 1.08004 * 119.91503 * 179.74410 * 9 8 7 34 34 H 1.08002 * 119.95664 * 179.97438 * 10 9 8 35 35 H 1.07995 * 120.04508 * 179.97438 * 11 10 9 36 36 H 0.96995 * 120.00264 * 180.02562 * 18 17 15 37 37 H 1.09003 * 115.54658 * 336.50288 * 23 14 12 38 38 H 1.08999 * 117.50046 * 0.02562 * 24 23 14 39 39 H 1.09000 * 117.49451 * 145.02300 * 24 23 14 40 40 H 1.08998 * 117.49994 * 214.98496 * 25 23 14 41 41 H 1.09003 * 117.49649 * 359.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5763 1.9918 -0.8193 5 16 1.6153 2.2341 1.5759 6 6 2.0638 3.9169 1.3076 7 6 2.4994 4.3304 0.0545 8 6 2.8453 5.6509 -0.1532 9 6 2.7683 6.5594 0.8867 10 6 2.3403 6.1504 2.1365 11 6 1.9886 4.8324 2.3505 12 6 3.5367 1.4461 -0.1767 13 8 4.2618 1.4956 0.7944 14 7 4.0695 1.3942 -1.4136 15 6 5.4310 1.3969 -1.5742 16 1 5.8765 1.9362 -2.3970 17 6 6.2376 0.7061 -0.6784 18 7 7.4467 1.1451 -0.4092 19 14 5.6035 -0.8471 0.1434 20 1 6.0450 -2.0335 -0.6329 21 1 6.1418 -0.9312 1.5249 22 1 4.1198 -0.8112 0.1917 23 6 3.1936 1.3347 -2.5865 24 6 3.8417 1.0232 -3.9370 25 6 3.3421 2.4384 -3.6356 26 1 -0.3633 0.5974 -0.8362 27 1 -0.3632 0.4255 0.9354 28 1 -0.3633 -1.0228 -0.0992 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 2.5633 3.6207 -0.7571 32 1 3.1805 5.9738 -1.1279 33 1 3.0435 7.5908 0.7224 34 1 2.2818 6.8625 2.9463 35 1 1.6548 4.5136 3.3269 36 1 8.0099 0.6626 0.2159 37 1 2.1925 0.9430 -2.4062 38 1 4.9196 0.8621 -3.9527 39 1 3.2667 0.4269 -4.6454 40 1 2.4387 2.7726 -4.1459 41 1 4.0911 3.2089 -3.4530 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413246858.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:04 Heat of formation + Delta-G solvation = 17.730963 kcal Electronic energy + Delta-G solvation = -23775.446751 eV Core-core repulsion = 20554.441820 eV Total energy + Delta-G solvation = -3221.004931 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.10596 -39.76205 -38.07607 -35.86445 -34.87109 -33.33359 -32.06040 -31.85577 -29.44886 -26.56710 -23.95024 -23.62320 -23.42246 -23.05179 -22.50997 -21.52488 -18.94422 -18.63745 -17.91489 -17.74149 -16.98135 -16.58971 -16.00578 -15.89113 -15.60575 -15.24695 -15.16581 -15.01869 -14.64103 -14.37719 -14.04807 -13.85145 -13.77417 -13.41445 -13.05154 -12.80627 -12.70907 -12.54081 -12.33351 -12.29163 -12.14941 -12.05014 -11.84210 -11.61215 -11.30287 -11.20026 -10.81186 -10.65824 -10.24847 -9.92074 -9.44090 -8.52612 -8.31797 -6.07921 0.23593 0.42804 0.51203 1.13908 1.29401 1.32944 1.36054 1.93942 2.41568 2.52375 2.78715 2.90661 3.21407 3.56778 3.71560 3.81582 3.93039 4.02041 4.04703 4.12491 4.22264 4.26312 4.29515 4.41375 4.50528 4.58272 4.74990 4.81033 4.85701 4.91861 5.02923 5.05420 5.07703 5.20104 5.32948 5.35664 5.44167 5.45087 5.55490 5.63751 5.82278 6.00796 6.72069 6.90306 7.34398 7.89579 8.57559 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.012324 B = 0.006867 C = 0.006476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.406455 B = 4076.510911 C = 4322.605473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 C -0.087 4.087 4 H 0.124 0.876 5 S -0.083 6.083 6 C -0.100 4.100 7 C -0.143 4.143 8 C -0.111 4.111 9 C -0.129 4.129 10 C -0.103 4.103 11 C -0.119 4.119 12 C 0.464 3.536 13 O -0.581 6.581 14 N -0.435 5.435 15 C -0.354 4.354 16 H 0.070 0.930 17 C 0.062 3.938 18 N -0.888 5.888 19 Si 0.953 3.047 20 H -0.290 1.290 21 H -0.311 1.311 22 H -0.254 1.254 23 C 0.031 3.969 24 C -0.166 4.166 25 C -0.180 4.180 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.079 0.921 29 H 0.054 0.946 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.135 0.865 33 H 0.154 0.846 34 H 0.159 0.841 35 H 0.135 0.865 36 H 0.271 0.729 37 H 0.145 0.855 38 H 0.079 0.921 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.380 4.446 -2.593 18.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.141 4.141 3 C -0.219 4.219 4 H 0.142 0.858 5 S 0.163 5.837 6 C -0.213 4.213 7 C -0.167 4.167 8 C -0.131 4.131 9 C -0.149 4.149 10 C -0.122 4.122 11 C -0.142 4.142 12 C 0.252 3.748 13 O -0.465 6.465 14 N -0.154 5.154 15 C -0.480 4.480 16 H 0.088 0.912 17 C -0.145 4.145 18 N -0.523 5.523 19 Si 0.782 3.218 20 H -0.218 1.218 21 H -0.239 1.239 22 H -0.178 1.178 23 C -0.074 4.074 24 C -0.204 4.204 25 C -0.219 4.219 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.098 0.902 29 H 0.073 0.927 30 H 0.104 0.896 31 H 0.129 0.871 32 H 0.153 0.847 33 H 0.171 0.829 34 H 0.176 0.824 35 H 0.153 0.847 36 H 0.080 0.920 37 H 0.162 0.838 38 H 0.097 0.903 39 H 0.147 0.853 40 H 0.149 0.851 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.338 3.810 -1.080 17.784 hybrid contribution 1.528 -0.196 -0.583 1.647 sum -15.810 3.614 -1.663 16.303 Atomic orbital electron populations 1.21815 0.91169 1.03585 1.03345 1.21420 0.99201 0.90362 1.03146 1.23871 0.95559 1.02829 0.99625 0.85820 1.84746 1.75732 1.00279 1.22949 1.21991 1.04374 0.97446 0.97481 1.21276 1.01752 0.97733 0.95906 1.21315 0.98546 0.92601 1.00628 1.21523 0.99858 1.00765 0.92767 1.21432 0.97545 0.95102 0.98170 1.21010 1.02021 0.93597 0.97619 1.20433 0.90050 0.80534 0.83770 1.90477 1.62113 1.54133 1.39759 1.43170 1.04705 1.63940 1.03607 1.18398 0.80217 1.33710 1.15698 0.91199 1.25742 0.94407 0.99312 0.95017 1.69978 1.12046 1.37596 1.32700 0.85596 0.80576 0.79345 0.76329 1.21781 1.23917 1.17772 1.22267 0.95863 1.05842 0.83383 1.23219 1.01470 0.98799 0.96877 1.23319 1.03808 0.92111 1.02619 0.90527 0.91988 0.90188 0.92685 0.89585 0.87138 0.84742 0.82852 0.82360 0.84706 0.91964 0.83797 0.90277 0.85260 0.85111 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.67 71.98 0.70 -2.23 16 2 C -0.10 -3.05 4.42 30.60 0.14 -2.92 16 3 C -0.09 -3.05 1.00 29.85 0.03 -3.02 16 4 H 0.12 3.76 5.70 -2.39 -0.01 3.75 16 5 S -0.08 -2.95 19.67 -56.49 -1.11 -4.06 16 6 C -0.10 -3.62 6.04 22.62 0.14 -3.48 16 7 C -0.14 -5.19 8.80 22.41 0.20 -4.99 16 8 C -0.11 -3.46 10.04 22.25 0.22 -3.24 16 9 C -0.13 -3.35 10.04 22.30 0.22 -3.12 16 10 C -0.10 -2.65 10.04 22.24 0.22 -2.42 16 11 C -0.12 -3.67 9.79 22.41 0.22 -3.45 16 12 C 0.46 21.63 2.88 87.66 0.25 21.88 16 13 O -0.58 -33.15 12.32 -3.07 -0.04 -33.19 16 14 N -0.43 -20.00 2.56 -613.14 -1.57 -21.57 16 15 C -0.35 -19.80 8.33 84.04 0.70 -19.10 16 16 H 0.07 4.15 7.41 -2.91 -0.02 4.13 16 17 C 0.06 3.72 4.48 84.92 0.38 4.10 16 18 N -0.89 -56.31 13.96 21.66 0.30 -56.01 16 19 Si 0.95 50.68 25.83 68.60 1.77 52.45 16 20 H -0.29 -14.50 7.11 99.48 0.71 -13.80 16 21 H -0.31 -17.62 7.11 99.48 0.71 -16.92 16 22 H -0.25 -12.66 5.00 99.48 0.50 -12.16 16 23 C 0.03 1.03 5.62 44.99 0.25 1.28 16 24 C -0.17 -5.06 9.79 30.62 0.30 -4.76 16 25 C -0.18 -5.26 10.20 30.62 0.31 -4.94 16 26 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.06 1.33 7.43 -2.39 -0.02 1.31 16 28 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.05 1.88 8.03 -2.39 -0.02 1.86 16 30 H 0.09 2.48 7.27 -2.39 -0.02 2.46 16 31 H 0.11 4.18 5.08 -2.91 -0.01 4.17 16 32 H 0.13 3.67 8.06 -2.91 -0.02 3.65 16 33 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 34 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 35 H 0.14 3.69 8.06 -2.91 -0.02 3.66 16 36 H 0.27 16.39 8.31 -92.71 -0.77 15.62 16 37 H 0.14 3.82 5.76 -2.39 -0.01 3.80 16 38 H 0.08 2.98 6.82 -2.39 -0.02 2.97 16 39 H 0.13 2.87 8.14 -2.39 -0.02 2.85 16 40 H 0.13 2.72 8.14 -2.39 -0.02 2.70 16 41 H 0.07 2.41 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -76.51 339.42 4.45 -72.05 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.82 Total: 20.74 kcal Atomic # 6 Polarization: -34.69 SS G_CDS: 4.28 Total: -30.41 kcal Atomic # 7 Polarization: -76.32 SS G_CDS: -1.27 Total: -77.58 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: -0.04 Total: -33.19 kcal Atomic # 14 Polarization: 50.68 SS G_CDS: 1.77 Total: 52.45 kcal Atomic # 16 Polarization: -2.95 SS G_CDS: -1.11 Total: -4.06 kcal Total: -76.51 4.45 -72.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413246858.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.782 kcal (2) G-P(sol) polarization free energy of solvation -76.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds