Wall clock time and date at job start Tue Mar 31 2020 08:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50702 * 120.00164 * 2 1 4 4 C 1.52993 * 109.47193 * 125.00037 * 3 2 1 5 5 H 1.09000 * 109.47028 * 304.99312 * 4 3 2 6 6 C 1.53003 * 109.46822 * 184.99951 * 4 3 2 7 7 C 1.50704 * 109.46967 * 174.99894 * 6 4 3 8 8 C 1.38237 * 120.00078 * 269.72620 * 7 6 4 9 9 C 1.38234 * 120.00306 * 179.76736 * 8 7 6 10 10 C 1.38237 * 119.99503 * 0.50670 * 9 8 7 11 11 C 1.38238 * 120.00335 * 359.74386 * 10 9 8 12 12 C 1.38230 * 119.99701 * 0.02562 * 11 10 9 13 13 N 1.46503 * 109.47379 * 64.99910 * 4 3 2 14 14 C 1.34774 * 119.99578 * 274.99926 * 13 4 3 15 15 O 1.21277 * 120.00383 * 359.97438 * 14 13 4 16 16 C 1.50707 * 119.99504 * 179.97438 * 14 13 4 17 17 S 1.81001 * 109.46781 * 179.97438 * 16 14 13 18 18 C 1.76204 * 99.99751 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99996 * 0.02562 * 18 17 16 20 20 C 1.38798 * 119.99865 * 179.97438 * 18 17 16 21 21 N 1.31628 * 120.00333 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99705 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47186 * 90.00469 * 22 20 18 24 24 H 1.48505 * 109.46836 * 209.99926 * 22 20 18 25 25 H 1.48501 * 109.47306 * 330.00198 * 22 20 18 26 26 H 1.07999 * 120.00108 * 179.72930 * 1 2 3 27 27 H 1.08000 * 119.99390 * 359.72719 * 1 2 3 28 28 H 1.08005 * 119.99846 * 180.27284 * 2 1 3 29 29 H 1.09003 * 109.46806 * 245.00403 * 3 2 1 30 30 H 1.08997 * 109.46799 * 4.99500 * 3 2 1 31 31 H 1.08998 * 109.47154 * 294.99656 * 6 4 3 32 32 H 1.09003 * 109.47211 * 55.00194 * 6 4 3 33 33 H 1.07997 * 119.99516 * 359.97438 * 8 7 6 34 34 H 1.07992 * 120.00295 * 180.23099 * 9 8 7 35 35 H 1.08002 * 119.99606 * 179.72613 * 10 9 8 36 36 H 1.07995 * 120.00219 * 179.97438 * 11 10 9 37 37 H 1.08006 * 120.00075 * 179.97438 * 12 11 10 38 38 H 0.96994 * 119.99733 * 94.99807 * 13 4 3 39 39 H 1.08995 * 109.47157 * 299.99891 * 16 14 13 40 40 H 1.08999 * 109.46888 * 59.99892 * 16 14 13 41 41 H 0.96999 * 120.00331 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 1 2.4883 1.1470 2.1060 6 6 3.7092 2.7046 1.2551 7 6 4.5726 2.7745 2.4883 8 6 4.0415 3.2348 3.6787 9 6 4.8320 3.2943 4.8111 10 6 6.1566 2.9035 4.7506 11 6 6.6892 2.4481 3.5590 12 6 5.8973 2.3841 2.4278 13 7 4.0547 0.2968 1.0001 14 6 3.8092 -0.9671 1.3986 15 8 2.7446 -1.2465 1.9077 16 6 4.8579 -2.0331 1.2114 17 16 4.2336 -3.6107 1.8420 18 6 5.6201 -4.6448 1.5056 19 1 6.5024 -4.2306 1.0405 20 6 5.5786 -5.9914 1.8393 21 7 4.5034 -6.4962 2.4066 22 14 7.0487 -7.0875 1.4833 23 1 7.9652 -7.0814 2.6517 24 1 6.5820 -8.4740 1.2276 25 1 7.7676 -6.5787 0.2876 26 1 -0.5400 -0.9353 -0.0044 27 1 -0.5399 0.9354 0.0045 28 1 1.8500 -0.9354 -0.0045 29 1 2.6213 1.4026 -0.9314 30 1 1.3587 2.1316 0.0895 31 1 4.3275 2.8535 0.3699 32 1 2.9468 3.4823 1.3008 33 1 3.0079 3.5446 3.7247 34 1 4.4161 3.6504 5.7420 35 1 6.7754 2.9543 5.6343 36 1 7.7241 2.1432 3.5116 37 1 6.3135 2.0287 1.4967 38 1 4.9063 0.5204 0.5933 39 1 5.0906 -2.1317 0.1512 40 1 5.7597 -1.7554 1.7570 41 1 4.4746 -7.4372 2.6402 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413980717.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:00 Heat of formation + Delta-G solvation = -5.025470 kcal Electronic energy + Delta-G solvation = -22042.326963 eV Core-core repulsion = 18820.335239 eV Total energy + Delta-G solvation = -3221.991724 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.98052 -38.94064 -36.28011 -33.76717 -32.47780 -32.40517 -30.98486 -30.07890 -28.30759 -26.28179 -25.46749 -22.72448 -22.41219 -20.99046 -20.22737 -19.57502 -17.78937 -16.92499 -16.45050 -16.00431 -15.76003 -15.14454 -15.00579 -14.79292 -14.44659 -14.01081 -13.74703 -13.52893 -13.44338 -13.09736 -12.95462 -12.66302 -12.47922 -12.19999 -12.07844 -11.84461 -11.18359 -11.16907 -11.07519 -11.04344 -11.00861 -10.75237 -10.56216 -9.79654 -9.41256 -9.22366 -9.05275 -9.01440 -8.84602 -8.56046 -8.21338 -6.47724 -6.20477 -3.90488 1.24989 1.31276 2.58692 3.07124 3.16157 3.22870 3.28800 3.33410 3.67439 3.75868 4.21785 4.53172 4.68471 4.74197 4.90293 5.00931 5.06882 5.14716 5.18674 5.22405 5.27233 5.35214 5.39616 5.51683 5.56888 5.59609 5.69753 5.78694 5.90984 5.92768 5.93568 6.09122 6.16821 6.24357 6.36215 6.42367 6.47668 6.72467 6.90671 6.94475 7.07906 7.60649 7.77840 8.36347 8.69204 9.24962 10.86936 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.012553 B = 0.003985 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.981430 B = 7025.412020 C = 8629.292075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.134 4.134 3 C -0.104 4.104 4 C 0.157 3.843 5 H 0.091 0.909 6 C -0.088 4.088 7 C -0.079 4.079 8 C -0.117 4.117 9 C -0.118 4.118 10 C -0.125 4.125 11 C -0.116 4.116 12 C -0.112 4.112 13 N -0.730 5.730 14 C 0.532 3.468 15 O -0.510 6.510 16 C -0.154 4.154 17 S -0.059 6.059 18 C -0.535 4.535 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.917 3.083 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 H 0.095 0.905 27 H 0.087 0.913 28 H 0.118 0.882 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.395 0.605 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.654 22.370 -2.233 22.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.152 4.152 3 C -0.142 4.142 4 C 0.051 3.949 5 H 0.109 0.891 6 C -0.126 4.126 7 C -0.079 4.079 8 C -0.135 4.135 9 C -0.136 4.136 10 C -0.143 4.143 11 C -0.134 4.134 12 C -0.130 4.130 13 N -0.384 5.384 14 C 0.318 3.682 15 O -0.384 6.384 16 C -0.305 4.305 17 S 0.168 5.832 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.744 3.256 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 H 0.113 0.887 27 H 0.106 0.894 28 H 0.136 0.864 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.228 0.772 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.229 21.742 -1.303 21.815 hybrid contribution 2.636 -0.396 -0.891 2.811 sum 1.408 21.346 -2.194 21.505 Atomic orbital electron populations 1.23674 0.95932 1.01128 1.03692 1.23044 0.96093 0.98613 0.97432 1.21241 0.98071 0.96335 0.98592 1.20863 0.88866 0.85932 0.99199 0.89131 1.20937 0.98832 0.97054 0.95792 1.19770 0.94268 0.98692 0.95149 1.21031 0.99662 1.00222 0.92549 1.21128 0.94222 1.00032 0.98245 1.21148 0.95625 0.99599 0.97896 1.21151 0.99959 0.99308 0.93019 1.20998 0.93545 0.99855 0.98609 1.46035 1.18730 1.08674 1.64950 1.20222 0.88357 0.82467 0.77160 1.90716 1.25375 1.80783 1.41482 1.23538 1.00762 1.01042 1.05109 1.85378 1.23346 0.95082 1.79411 1.22870 1.02349 0.96190 1.46946 0.91015 1.24976 0.96839 0.97078 0.94617 1.70015 1.27273 1.14105 1.38924 0.86190 0.81436 0.79263 0.78747 1.20283 1.20753 1.19703 0.88695 0.89439 0.86417 0.90899 0.90975 0.90341 0.89498 0.86189 0.86223 0.86278 0.86105 0.86337 0.77156 0.89457 0.89455 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.82 14.32 29.01 0.42 -2.40 16 2 C -0.13 -1.94 7.93 -36.03 -0.29 -2.23 16 3 C -0.10 -1.13 5.34 -27.89 -0.15 -1.28 16 4 C 0.16 1.78 2.24 -67.93 -0.15 1.63 16 5 H 0.09 1.29 7.58 -51.93 -0.39 0.90 16 6 C -0.09 -0.74 4.89 -27.88 -0.14 -0.87 16 7 C -0.08 -0.80 4.95 -104.62 -0.52 -1.32 16 8 C -0.12 -1.20 9.70 -39.58 -0.38 -1.59 16 9 C -0.12 -1.21 10.05 -39.58 -0.40 -1.60 16 10 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 11 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 12 C -0.11 -1.14 9.10 -39.58 -0.36 -1.50 16 13 N -0.73 -9.44 4.49 -53.80 -0.24 -9.68 16 14 C 0.53 9.66 6.63 -10.98 -0.07 9.59 16 15 O -0.51 -11.13 13.05 5.56 0.07 -11.06 16 16 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 17 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 18 C -0.54 -15.29 9.50 30.94 0.29 -14.99 16 19 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 20 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 21 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 22 Si 0.92 21.48 29.55 -169.99 -5.02 16.45 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 H 0.09 1.33 8.06 -52.49 -0.42 0.91 16 27 H 0.09 0.99 7.84 -52.49 -0.41 0.58 16 28 H 0.12 2.10 5.72 -52.48 -0.30 1.80 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.65 7.79 -51.93 -0.40 0.25 16 31 H 0.08 0.54 8.09 -51.93 -0.42 0.12 16 32 H 0.09 0.59 8.08 -51.93 -0.42 0.17 16 33 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 35 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.12 0.99 7.57 -52.48 -0.40 0.60 16 38 H 0.39 4.07 7.83 -40.82 -0.32 3.75 16 39 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 40 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 41 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 359.94 15.07 5.42 5.42 Total: -1.00 -34.16 359.94 -9.66 -43.81 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -5.99 Total: 5.09 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: -2.42 Total: -20.70 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: 0.49 Total: -35.22 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.07 Total: -11.06 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.16 -9.66 -43.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413980717.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.789 kcal (2) G-P(sol) polarization free energy of solvation -34.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds