Wall clock time and date at job start Tue Mar 31 2020 08:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50702 * 120.00164 * 2 1 4 4 C 1.52993 * 109.47193 * 125.00037 * 3 2 1 5 5 H 1.09000 * 109.47028 * 304.99312 * 4 3 2 6 6 C 1.53003 * 109.46822 * 184.99951 * 4 3 2 7 7 C 1.50704 * 109.46967 * 174.99894 * 6 4 3 8 8 C 1.38237 * 120.00078 * 269.72620 * 7 6 4 9 9 C 1.38234 * 120.00306 * 179.76736 * 8 7 6 10 10 C 1.38237 * 119.99503 * 0.50670 * 9 8 7 11 11 C 1.38238 * 120.00335 * 359.74386 * 10 9 8 12 12 C 1.38230 * 119.99701 * 0.02562 * 11 10 9 13 13 N 1.46503 * 109.47379 * 64.99910 * 4 3 2 14 14 C 1.34774 * 119.99578 * 274.99926 * 13 4 3 15 15 O 1.21277 * 120.00383 * 359.97438 * 14 13 4 16 16 C 1.50707 * 119.99504 * 179.97438 * 14 13 4 17 17 S 1.81001 * 109.46781 * 179.97438 * 16 14 13 18 18 C 1.76204 * 99.99751 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99996 * 0.02562 * 18 17 16 20 20 C 1.38798 * 119.99865 * 179.97438 * 18 17 16 21 21 N 1.31628 * 120.00333 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99705 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47186 * 90.00469 * 22 20 18 24 24 H 1.48505 * 109.46836 * 209.99926 * 22 20 18 25 25 H 1.48501 * 109.47306 * 330.00198 * 22 20 18 26 26 H 1.07999 * 120.00108 * 179.72930 * 1 2 3 27 27 H 1.08000 * 119.99390 * 359.72719 * 1 2 3 28 28 H 1.08005 * 119.99846 * 180.27284 * 2 1 3 29 29 H 1.09003 * 109.46806 * 245.00403 * 3 2 1 30 30 H 1.08997 * 109.46799 * 4.99500 * 3 2 1 31 31 H 1.08998 * 109.47154 * 294.99656 * 6 4 3 32 32 H 1.09003 * 109.47211 * 55.00194 * 6 4 3 33 33 H 1.07997 * 119.99516 * 359.97438 * 8 7 6 34 34 H 1.07992 * 120.00295 * 180.23099 * 9 8 7 35 35 H 1.08002 * 119.99606 * 179.72613 * 10 9 8 36 36 H 1.07995 * 120.00219 * 179.97438 * 11 10 9 37 37 H 1.08006 * 120.00075 * 179.97438 * 12 11 10 38 38 H 0.96994 * 119.99733 * 94.99807 * 13 4 3 39 39 H 1.08995 * 109.47157 * 299.99891 * 16 14 13 40 40 H 1.08999 * 109.46888 * 59.99892 * 16 14 13 41 41 H 0.96999 * 120.00331 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 1 2.4883 1.1470 2.1060 6 6 3.7092 2.7046 1.2551 7 6 4.5726 2.7745 2.4883 8 6 4.0415 3.2348 3.6787 9 6 4.8320 3.2943 4.8111 10 6 6.1566 2.9035 4.7506 11 6 6.6892 2.4481 3.5590 12 6 5.8973 2.3841 2.4278 13 7 4.0547 0.2968 1.0001 14 6 3.8092 -0.9671 1.3986 15 8 2.7446 -1.2465 1.9077 16 6 4.8579 -2.0331 1.2114 17 16 4.2336 -3.6107 1.8420 18 6 5.6201 -4.6448 1.5056 19 1 6.5024 -4.2306 1.0405 20 6 5.5786 -5.9914 1.8393 21 7 4.5034 -6.4962 2.4066 22 14 7.0487 -7.0875 1.4833 23 1 7.9652 -7.0814 2.6517 24 1 6.5820 -8.4740 1.2276 25 1 7.7676 -6.5787 0.2876 26 1 -0.5400 -0.9353 -0.0044 27 1 -0.5399 0.9354 0.0045 28 1 1.8500 -0.9354 -0.0045 29 1 2.6213 1.4026 -0.9314 30 1 1.3587 2.1316 0.0895 31 1 4.3275 2.8535 0.3699 32 1 2.9468 3.4823 1.3008 33 1 3.0079 3.5446 3.7247 34 1 4.4161 3.6504 5.7420 35 1 6.7754 2.9543 5.6343 36 1 7.7241 2.1432 3.5116 37 1 6.3135 2.0287 1.4967 38 1 4.9063 0.5204 0.5933 39 1 5.0906 -2.1317 0.1512 40 1 5.7597 -1.7554 1.7570 41 1 4.4746 -7.4372 2.6402 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413980717.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:00 Heat of formation + Delta-G solvation = -25.264480 kcal Electronic energy + Delta-G solvation = -22043.204593 eV Core-core repulsion = 18820.335239 eV Total energy + Delta-G solvation = -3222.869353 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.07315 -39.91195 -37.38935 -34.82305 -34.58785 -33.50004 -31.71745 -31.27305 -29.60253 -27.65300 -27.08783 -23.47552 -23.37921 -21.88768 -21.47654 -20.63472 -19.78946 -17.86031 -17.64652 -17.21883 -16.88909 -16.87473 -16.08317 -16.00422 -15.69076 -15.58018 -14.82259 -14.53721 -14.52974 -14.28041 -14.22307 -13.83721 -13.51978 -13.19620 -13.16914 -13.11368 -12.89883 -12.77837 -12.58514 -12.11445 -11.95457 -11.79433 -11.72104 -11.54620 -11.14544 -10.84036 -10.41251 -10.26329 -9.84850 -9.74001 -9.49209 -8.65401 -8.34899 -6.12267 0.49200 0.55723 1.27799 1.41431 1.47291 1.50326 1.58022 1.72213 2.26660 2.37468 2.91370 2.99273 3.33614 3.75463 3.88764 3.99794 4.08608 4.19890 4.23546 4.28559 4.32236 4.37416 4.40632 4.51509 4.57098 4.62100 4.69580 4.82551 4.87963 4.95186 5.13119 5.16090 5.22460 5.25165 5.41135 5.56627 5.61845 5.68165 5.76553 5.82266 6.03009 6.18542 6.19310 6.60146 7.06506 7.36323 8.74307 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.012553 B = 0.003985 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.981430 B = 7025.412020 C = 8629.292075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.096 4.096 4 C 0.159 3.841 5 H 0.060 0.940 6 C -0.077 4.077 7 C -0.090 4.090 8 C -0.131 4.131 9 C -0.134 4.134 10 C -0.140 4.140 11 C -0.133 4.133 12 C -0.124 4.124 13 N -0.705 5.705 14 C 0.534 3.466 15 O -0.553 6.553 16 C -0.130 4.130 17 S -0.148 6.148 18 C -0.547 4.547 19 H 0.081 0.919 20 C 0.015 3.985 21 N -0.912 5.912 22 Si 0.997 3.003 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.258 1.258 26 H 0.078 0.922 27 H 0.118 0.882 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.110 0.890 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.137 0.863 38 H 0.411 0.589 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.166 24.473 -3.664 24.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.169 4.169 3 C -0.134 4.134 4 C 0.055 3.945 5 H 0.079 0.921 6 C -0.114 4.114 7 C -0.090 4.090 8 C -0.149 4.149 9 C -0.151 4.151 10 C -0.158 4.158 11 C -0.151 4.151 12 C -0.142 4.142 13 N -0.359 5.359 14 C 0.320 3.680 15 O -0.430 6.430 16 C -0.281 4.281 17 S 0.079 5.921 18 C -0.695 4.695 19 H 0.099 0.901 20 C -0.190 4.190 21 N -0.548 5.548 22 Si 0.818 3.182 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.182 1.182 26 H 0.097 0.903 27 H 0.136 0.864 28 H 0.096 0.904 29 H 0.111 0.889 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.129 0.871 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.154 0.846 38 H 0.248 0.752 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.309 23.901 -2.756 24.061 hybrid contribution 2.127 -0.943 -0.431 2.366 sum 2.435 22.958 -3.187 23.306 Atomic orbital electron populations 1.23825 0.95859 1.01850 1.03000 1.23085 0.96578 0.98982 0.98248 1.21235 0.98209 0.94980 0.98932 1.20962 0.88556 0.86758 0.98271 0.92132 1.20923 0.99351 0.95175 0.95960 1.20027 0.94591 0.98570 0.95797 1.21340 1.00425 1.00325 0.92822 1.21419 0.94457 1.00198 0.99072 1.21429 0.96058 0.99699 0.98587 1.21441 1.00805 0.99547 0.93333 1.21307 0.93780 0.99770 0.99296 1.45800 1.19867 1.07092 1.63112 1.19886 0.87155 0.83704 0.77294 1.90709 1.26817 1.81669 1.43828 1.23377 1.01482 0.97538 1.05747 1.85548 1.25491 1.00315 1.80757 1.23208 1.02459 0.96812 1.46982 0.90100 1.26103 1.00117 0.98739 0.94054 1.70182 1.29836 1.14601 1.40221 0.84981 0.77203 0.76804 0.79169 1.19317 1.20272 1.18159 0.90316 0.86429 0.90427 0.88932 0.88113 0.87815 0.87137 0.84936 0.84931 0.85096 0.85009 0.84555 0.75182 0.87668 0.87953 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -5.56 14.32 67.78 0.97 -4.59 16 2 C -0.15 -4.32 7.93 25.64 0.20 -4.11 16 3 C -0.10 -1.80 5.34 29.85 0.16 -1.64 16 4 C 0.16 3.25 2.24 44.99 0.10 3.35 16 5 H 0.06 1.67 7.58 -2.39 -0.02 1.65 16 6 C -0.08 -0.99 4.89 29.85 0.15 -0.85 16 7 C -0.09 -1.60 4.95 -19.86 -0.10 -1.70 16 8 C -0.13 -2.50 9.70 22.27 0.22 -2.28 16 9 C -0.13 -2.60 10.05 22.27 0.22 -2.38 16 10 C -0.14 -2.76 10.05 22.27 0.22 -2.53 16 11 C -0.13 -2.59 10.05 22.27 0.22 -2.37 16 12 C -0.12 -2.24 9.10 22.27 0.20 -2.04 16 13 N -0.70 -16.95 4.49 -442.53 -1.99 -18.93 16 14 C 0.53 19.38 6.63 87.66 0.58 19.97 16 15 O -0.55 -24.99 13.05 -3.02 -0.04 -25.03 16 16 C -0.13 -5.20 6.16 71.24 0.44 -4.76 16 17 S -0.15 -8.31 20.57 -56.49 -1.16 -9.47 16 18 C -0.55 -31.54 9.50 67.95 0.65 -30.89 16 19 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 20 C 0.01 0.84 5.49 84.86 0.47 1.30 16 21 N -0.91 -56.58 13.22 21.65 0.29 -56.30 16 22 Si 1.00 43.93 29.55 68.60 2.03 45.95 16 23 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 24 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 25 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 26 H 0.08 2.29 8.06 -2.91 -0.02 2.27 16 27 H 0.12 2.38 7.84 -2.91 -0.02 2.36 16 28 H 0.08 2.88 5.72 -2.91 -0.02 2.86 16 29 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.10 1.38 7.79 -2.39 -0.02 1.36 16 31 H 0.10 0.88 8.09 -2.39 -0.02 0.86 16 32 H 0.11 1.00 8.08 -2.39 -0.02 0.98 16 33 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 34 H 0.13 2.08 8.06 -2.91 -0.02 2.06 16 35 H 0.13 2.11 8.06 -2.91 -0.02 2.09 16 36 H 0.13 2.13 8.06 -2.91 -0.02 2.11 16 37 H 0.14 1.85 7.57 -2.91 -0.02 1.83 16 38 H 0.41 7.22 7.83 -92.71 -0.73 6.49 16 39 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 40 H 0.10 3.77 8.14 -2.40 -0.02 3.75 16 41 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -78.17 359.94 4.12 -74.06 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: 0.29 Total: 25.26 kcal Atomic # 6 Polarization: -40.25 SS G_CDS: 4.70 Total: -35.54 kcal Atomic # 7 Polarization: -73.53 SS G_CDS: -1.70 Total: -75.23 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.04 Total: -25.03 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: -8.31 SS G_CDS: -1.16 Total: -9.47 kcal Total: -78.17 4.12 -74.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413980717.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.794 kcal (2) G-P(sol) polarization free energy of solvation -78.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds