Wall clock time and date at job start Tue Mar 31 2020 08:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32573 * 119.99705 * 2 1 4 4 C 1.47804 * 120.00151 * 171.81814 * 3 2 1 5 5 C 1.39539 * 120.14154 * 322.39884 * 4 3 2 6 6 C 1.37981 * 119.85313 * 179.74301 * 5 4 3 7 7 C 1.38342 * 120.14426 * 0.50401 * 6 5 4 8 8 C 1.38344 * 120.28437 * 359.76780 * 7 6 5 9 9 C 1.37980 * 120.14518 * 359.97438 * 8 7 6 10 10 C 1.50697 * 120.00479 * 180.02562 * 2 1 3 11 11 N 1.46498 * 109.47325 * 56.56950 * 10 2 1 12 12 C 1.46499 * 119.99781 * 264.97911 * 11 10 2 13 13 C 1.34771 * 120.00285 * 84.97703 * 11 10 2 14 14 O 1.21284 * 119.99556 * 0.02562 * 13 11 10 15 15 C 1.50695 * 120.00345 * 179.97438 * 13 11 10 16 16 S 1.80995 * 109.47233 * 180.02562 * 15 13 11 17 17 C 1.76201 * 99.99891 * 180.02562 * 16 15 13 18 18 H 1.07996 * 120.00086 * 359.97438 * 17 16 15 19 19 C 1.38802 * 120.00235 * 180.02562 * 17 16 15 20 20 N 1.31630 * 119.99723 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00526 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46918 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47518 * 119.99540 * 21 19 17 24 24 H 1.48497 * 109.47297 * 239.99926 * 21 19 17 25 25 H 1.09005 * 109.47392 * 90.00475 * 1 2 3 26 26 H 1.09001 * 109.46890 * 209.99472 * 1 2 3 27 27 H 1.09001 * 109.47568 * 329.99638 * 1 2 3 28 28 H 1.08002 * 119.99615 * 351.54248 * 3 2 1 29 29 H 1.07994 * 120.06923 * 359.97438 * 5 4 3 30 30 H 1.08002 * 119.92618 * 180.24914 * 6 5 4 31 31 H 1.07994 * 119.85470 * 179.74525 * 7 6 5 32 32 H 1.07999 * 119.92689 * 179.97438 * 8 7 6 33 33 H 1.07998 * 120.07209 * 180.02562 * 9 8 7 34 34 H 1.09001 * 109.47215 * 176.57182 * 10 2 1 35 35 H 1.09004 * 109.46455 * 296.56709 * 10 2 1 36 36 H 1.09005 * 109.47161 * 95.07463 * 12 11 10 37 37 H 1.08998 * 109.47368 * 215.07821 * 12 11 10 38 38 H 1.09000 * 109.47466 * 335.08271 * 12 11 10 39 39 H 1.09000 * 109.47131 * 300.00726 * 15 13 11 40 40 H 1.09008 * 109.46670 * 60.00236 * 15 13 11 41 41 H 0.97001 * 120.00488 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1698 1.1482 0.0000 4 6 3.6365 1.1548 0.1822 5 6 4.2370 0.2567 1.0654 6 6 5.6073 0.2645 1.2268 7 6 6.3846 1.1671 0.5233 8 6 5.7949 2.0638 -0.3496 9 6 4.4262 2.0628 -0.5242 10 6 2.2606 -1.3050 -0.0006 11 7 1.8458 -2.1079 -1.1536 12 6 0.7951 -3.1176 -1.0032 13 6 2.4309 -1.9177 -2.3527 14 8 3.3011 -1.0821 -2.4771 15 6 2.0047 -2.7441 -3.5387 16 16 2.9686 -2.2570 -4.9911 17 6 2.2837 -3.3485 -6.1929 18 1 1.5042 -4.0410 -5.9115 19 6 2.7467 -3.3191 -7.5011 20 7 3.6972 -2.4754 -7.8440 21 14 2.0212 -4.4767 -8.7750 22 1 0.9761 -5.3191 -8.1401 23 1 1.4175 -3.6848 -9.8767 24 1 3.0936 -5.3468 -9.3209 25 1 -0.3634 -0.0001 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 1.6385 2.0783 -0.1376 29 1 3.6308 -0.4454 1.6184 30 1 6.0736 -0.4328 1.9071 31 1 7.4563 1.1718 0.6564 32 1 6.4072 2.7662 -0.8956 33 1 3.9671 2.7631 -1.2062 34 1 3.3306 -1.1067 -0.0619 35 1 2.0441 -1.8498 0.9184 36 1 -0.1653 -2.6878 -1.2879 37 1 1.0161 -3.9705 -1.6450 38 1 0.7525 -3.4458 0.0354 39 1 2.1759 -3.7994 -3.3265 40 1 0.9448 -2.5799 -3.7338 41 1 4.0206 -2.4545 -8.7582 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427226281.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:28:02 Heat of formation + Delta-G solvation = 9.739859 kcal Electronic energy + Delta-G solvation = -22192.083919 eV Core-core repulsion = 18970.732468 eV Total energy + Delta-G solvation = -3221.351451 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.84585 -38.87761 -36.26913 -34.41063 -32.41154 -31.08332 -30.89256 -29.59999 -27.52689 -26.48060 -25.66235 -25.20600 -22.40058 -21.86212 -19.47405 -18.45533 -17.63006 -16.79526 -16.33844 -15.91593 -15.50267 -15.11458 -14.81622 -14.79078 -14.12218 -13.94107 -13.76011 -13.29808 -13.28973 -12.95255 -12.85738 -12.59160 -12.52832 -12.42183 -12.20810 -11.99878 -11.58621 -11.50161 -11.06250 -10.99660 -10.98186 -10.78452 -10.74122 -9.78993 -9.63811 -9.22655 -9.05704 -8.81028 -8.44355 -8.18624 -8.04522 -6.47119 -6.19989 -3.89926 1.08551 1.50162 2.30137 3.08182 3.16362 3.22250 3.28915 3.33450 3.69552 3.95325 4.22126 4.70412 4.82473 4.90151 4.96814 5.02874 5.10774 5.15035 5.16458 5.23991 5.35250 5.42406 5.48005 5.54766 5.59770 5.63144 5.65686 5.72830 5.86523 5.88088 5.96437 6.04419 6.12207 6.17260 6.37734 6.49431 6.58207 6.64199 6.69650 6.88398 7.08621 7.60604 7.62591 8.37061 8.66425 9.25375 10.87502 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.016655 B = 0.003678 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.738826 B = 7609.989596 C = 8638.155561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.131 4.131 3 C -0.110 4.110 4 C -0.042 4.042 5 C -0.116 4.116 6 C -0.123 4.123 7 C -0.123 4.123 8 C -0.117 4.117 9 C -0.100 4.100 10 C 0.138 3.862 11 N -0.621 5.621 12 C 0.080 3.920 13 C 0.530 3.470 14 O -0.505 6.505 15 C -0.149 4.149 16 S -0.061 6.061 17 C -0.534 4.534 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.119 0.881 29 H 0.122 0.878 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.105 0.895 35 H 0.078 0.922 36 H 0.053 0.947 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.751 4.273 20.533 21.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.132 4.132 3 C -0.129 4.129 4 C -0.042 4.042 5 C -0.134 4.134 6 C -0.141 4.141 7 C -0.141 4.141 8 C -0.135 4.135 9 C -0.118 4.118 10 C 0.016 3.984 11 N -0.357 5.357 12 C -0.063 4.063 13 C 0.318 3.682 14 O -0.378 6.378 15 C -0.299 4.299 16 S 0.165 5.835 17 C -0.682 4.682 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.744 3.256 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.137 0.863 31 H 0.136 0.864 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.123 0.877 35 H 0.096 0.904 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.343 5.555 20.200 21.080 hybrid contribution -1.621 -1.779 -0.838 2.549 sum -3.965 3.775 19.362 20.121 Atomic orbital electron populations 1.20726 0.91749 1.01987 1.02218 1.22390 0.95929 0.95135 0.99763 1.21450 0.91918 0.97693 1.01835 1.18949 0.93104 0.95747 0.96395 1.21294 0.94947 0.98230 0.98940 1.21012 0.93781 0.99100 1.00174 1.21140 0.99626 0.96092 0.97205 1.21070 0.94853 0.99202 0.98363 1.21221 0.93725 0.98544 0.98268 1.21000 1.00476 0.88912 0.88045 1.47888 1.39875 1.38459 1.09446 1.21793 0.90654 0.91660 1.02212 1.20314 0.81364 0.83498 0.83050 1.90719 1.29937 1.33795 1.83314 1.23549 1.05263 1.02057 0.99054 1.85404 1.49238 1.51514 0.97306 1.22908 1.25322 1.23852 0.96156 0.90964 1.24985 0.94877 0.96004 0.97694 1.70031 1.26332 1.34905 1.19040 0.86131 0.78889 0.80060 0.80504 1.19624 1.20574 1.20571 0.91435 0.91877 0.91887 0.86289 0.86064 0.86260 0.86367 0.86135 0.86080 0.87747 0.90426 0.92886 0.90944 0.91397 0.89441 0.89500 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 9.74 36.00 0.35 -0.75 16 2 C -0.13 -1.61 5.58 -101.26 -0.56 -2.18 16 3 C -0.11 -1.41 9.39 -37.58 -0.35 -1.77 16 4 C -0.04 -0.58 5.20 -105.02 -0.55 -1.12 16 5 C -0.12 -1.45 7.27 -39.19 -0.28 -1.73 16 6 C -0.12 -1.45 10.03 -39.64 -0.40 -1.85 16 7 C -0.12 -1.48 10.04 -39.50 -0.40 -1.88 16 8 C -0.12 -1.50 10.03 -39.64 -0.40 -1.90 16 9 C -0.10 -1.39 9.79 -39.19 -0.38 -1.77 16 10 C 0.14 1.77 4.03 -5.20 -0.02 1.75 16 11 N -0.62 -9.03 2.73 -182.96 -0.50 -9.53 16 12 C 0.08 0.85 10.04 59.85 0.60 1.45 16 13 C 0.53 10.39 7.65 -10.99 -0.08 10.31 16 14 O -0.50 -11.79 15.52 5.55 0.09 -11.70 16 15 C -0.15 -3.10 4.77 36.00 0.17 -2.93 16 16 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 17 C -0.53 -15.38 9.50 30.94 0.29 -15.09 16 18 H 0.07 1.97 7.80 -52.49 -0.41 1.57 16 19 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 20 N -0.87 -26.42 13.22 55.49 0.73 -25.68 16 21 Si 0.92 21.55 29.55 -169.99 -5.02 16.53 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.53 8.12 -51.93 -0.42 0.11 16 27 H 0.06 0.54 8.07 -51.93 -0.42 0.12 16 28 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 29 H 0.12 1.27 6.35 -52.49 -0.33 0.94 16 30 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 31 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 34 H 0.10 1.57 3.99 -51.93 -0.21 1.36 16 35 H 0.08 0.76 7.75 -51.93 -0.40 0.35 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.78 6.65 -51.93 -0.35 0.44 16 38 H 0.07 0.53 7.79 -51.93 -0.40 0.13 16 39 H 0.09 1.70 7.41 -51.92 -0.38 1.31 16 40 H 0.09 1.70 8.11 -51.91 -0.42 1.28 16 41 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 358.42 15.07 5.40 5.40 Total: -1.00 -35.16 358.42 -9.47 -44.62 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -5.84 Total: 1.71 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -2.11 Total: -17.44 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: 0.23 Total: -35.21 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.09 Total: -11.70 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.16 -9.47 -44.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427226281.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.362 kcal (2) G-P(sol) polarization free energy of solvation -35.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds