Wall clock time and date at job start Tue Mar 31 2020 08:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32573 * 119.99705 * 2 1 4 4 C 1.47804 * 120.00151 * 171.81814 * 3 2 1 5 5 C 1.39539 * 120.14154 * 322.39884 * 4 3 2 6 6 C 1.37981 * 119.85313 * 179.74301 * 5 4 3 7 7 C 1.38342 * 120.14426 * 0.50401 * 6 5 4 8 8 C 1.38344 * 120.28437 * 359.76780 * 7 6 5 9 9 C 1.37980 * 120.14518 * 359.97438 * 8 7 6 10 10 C 1.50697 * 120.00479 * 180.02562 * 2 1 3 11 11 N 1.46498 * 109.47325 * 56.56950 * 10 2 1 12 12 C 1.46499 * 119.99781 * 264.97911 * 11 10 2 13 13 C 1.34771 * 120.00285 * 84.97703 * 11 10 2 14 14 O 1.21284 * 119.99556 * 0.02562 * 13 11 10 15 15 C 1.50695 * 120.00345 * 179.97438 * 13 11 10 16 16 S 1.80995 * 109.47233 * 180.02562 * 15 13 11 17 17 C 1.76201 * 99.99891 * 180.02562 * 16 15 13 18 18 H 1.07996 * 120.00086 * 359.97438 * 17 16 15 19 19 C 1.38802 * 120.00235 * 180.02562 * 17 16 15 20 20 N 1.31630 * 119.99723 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00526 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46918 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47518 * 119.99540 * 21 19 17 24 24 H 1.48497 * 109.47297 * 239.99926 * 21 19 17 25 25 H 1.09005 * 109.47392 * 90.00475 * 1 2 3 26 26 H 1.09001 * 109.46890 * 209.99472 * 1 2 3 27 27 H 1.09001 * 109.47568 * 329.99638 * 1 2 3 28 28 H 1.08002 * 119.99615 * 351.54248 * 3 2 1 29 29 H 1.07994 * 120.06923 * 359.97438 * 5 4 3 30 30 H 1.08002 * 119.92618 * 180.24914 * 6 5 4 31 31 H 1.07994 * 119.85470 * 179.74525 * 7 6 5 32 32 H 1.07999 * 119.92689 * 179.97438 * 8 7 6 33 33 H 1.07998 * 120.07209 * 180.02562 * 9 8 7 34 34 H 1.09001 * 109.47215 * 176.57182 * 10 2 1 35 35 H 1.09004 * 109.46455 * 296.56709 * 10 2 1 36 36 H 1.09005 * 109.47161 * 95.07463 * 12 11 10 37 37 H 1.08998 * 109.47368 * 215.07821 * 12 11 10 38 38 H 1.09000 * 109.47466 * 335.08271 * 12 11 10 39 39 H 1.09000 * 109.47131 * 300.00726 * 15 13 11 40 40 H 1.09008 * 109.46670 * 60.00236 * 15 13 11 41 41 H 0.97001 * 120.00488 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1698 1.1482 0.0000 4 6 3.6365 1.1548 0.1822 5 6 4.2370 0.2567 1.0654 6 6 5.6073 0.2645 1.2268 7 6 6.3846 1.1671 0.5233 8 6 5.7949 2.0638 -0.3496 9 6 4.4262 2.0628 -0.5242 10 6 2.2606 -1.3050 -0.0006 11 7 1.8458 -2.1079 -1.1536 12 6 0.7951 -3.1176 -1.0032 13 6 2.4309 -1.9177 -2.3527 14 8 3.3011 -1.0821 -2.4771 15 6 2.0047 -2.7441 -3.5387 16 16 2.9686 -2.2570 -4.9911 17 6 2.2837 -3.3485 -6.1929 18 1 1.5042 -4.0410 -5.9115 19 6 2.7467 -3.3191 -7.5011 20 7 3.6972 -2.4754 -7.8440 21 14 2.0212 -4.4767 -8.7750 22 1 0.9761 -5.3191 -8.1401 23 1 1.4175 -3.6848 -9.8767 24 1 3.0936 -5.3468 -9.3209 25 1 -0.3634 -0.0001 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 1.6385 2.0783 -0.1376 29 1 3.6308 -0.4454 1.6184 30 1 6.0736 -0.4328 1.9071 31 1 7.4563 1.1718 0.6564 32 1 6.4072 2.7662 -0.8956 33 1 3.9671 2.7631 -1.2062 34 1 3.3306 -1.1067 -0.0619 35 1 2.0441 -1.8498 0.9184 36 1 -0.1653 -2.6878 -1.2879 37 1 1.0161 -3.9705 -1.6450 38 1 0.7525 -3.4458 0.0354 39 1 2.1759 -3.7994 -3.3265 40 1 0.9448 -2.5799 -3.7338 41 1 4.0206 -2.4545 -8.7582 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427226281.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:28:02 Heat of formation + Delta-G solvation = -10.366593 kcal Electronic energy + Delta-G solvation = -22192.955800 eV Core-core repulsion = 18970.732468 eV Total energy + Delta-G solvation = -3222.223332 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.04766 -40.00364 -37.42324 -35.55416 -34.59041 -32.07320 -31.82095 -31.04650 -28.55030 -27.70814 -27.37094 -26.50552 -23.38819 -22.81231 -20.87133 -19.67262 -19.34790 -18.06256 -17.54114 -17.13489 -16.88739 -16.61139 -16.26282 -15.96185 -15.70048 -15.13855 -14.81410 -14.51396 -14.49020 -14.24963 -13.97479 -13.82927 -13.55273 -13.45213 -13.28360 -13.15523 -13.04860 -12.92150 -12.63793 -12.50429 -12.47847 -11.91482 -11.73501 -11.69374 -11.16257 -10.89636 -10.48339 -10.25543 -9.81018 -9.59800 -9.00713 -8.67169 -8.35119 -6.13217 0.12107 0.52987 1.21957 1.34918 1.40790 1.49488 1.59852 1.67294 2.25138 2.30921 2.97157 2.99074 3.28865 3.76538 3.80461 3.93171 4.04946 4.11137 4.20498 4.22595 4.29344 4.34156 4.43742 4.48660 4.58568 4.66007 4.72137 4.77164 4.83036 4.87431 4.94393 5.05896 5.14529 5.18233 5.41119 5.45687 5.52988 5.59923 5.64242 5.69499 5.92082 6.14826 6.19356 6.34005 7.06108 7.22932 8.74470 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.016655 B = 0.003678 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.738826 B = 7609.989596 C = 8638.155561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.131 4.131 3 C -0.127 4.127 4 C -0.060 4.060 5 C -0.122 4.122 6 C -0.129 4.129 7 C -0.133 4.133 8 C -0.132 4.132 9 C -0.130 4.130 10 C 0.132 3.868 11 N -0.605 5.605 12 C 0.069 3.931 13 C 0.527 3.473 14 O -0.553 6.553 15 C -0.122 4.122 16 S -0.153 6.153 17 C -0.545 4.545 18 H 0.082 0.918 19 C 0.014 3.986 20 N -0.912 5.912 21 Si 0.999 3.001 22 H -0.256 1.256 23 H -0.274 1.274 24 H -0.274 1.274 25 H 0.053 0.947 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.125 0.875 29 H 0.141 0.859 30 H 0.146 0.854 31 H 0.141 0.859 32 H 0.133 0.867 33 H 0.117 0.883 34 H 0.082 0.918 35 H 0.120 0.880 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.672 2.098 22.136 22.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.132 4.132 3 C -0.146 4.146 4 C -0.060 4.060 5 C -0.140 4.140 6 C -0.147 4.147 7 C -0.151 4.151 8 C -0.150 4.150 9 C -0.148 4.148 10 C 0.011 3.989 11 N -0.339 5.339 12 C -0.073 4.073 13 C 0.314 3.686 14 O -0.431 6.431 15 C -0.273 4.273 16 S 0.074 5.926 17 C -0.693 4.693 18 H 0.100 0.900 19 C -0.191 4.191 20 N -0.549 5.549 21 Si 0.821 3.179 22 H -0.179 1.179 23 H -0.199 1.199 24 H -0.199 1.199 25 H 0.072 0.928 26 H 0.105 0.895 27 H 0.095 0.905 28 H 0.143 0.857 29 H 0.159 0.841 30 H 0.164 0.836 31 H 0.159 0.841 32 H 0.151 0.849 33 H 0.135 0.865 34 H 0.100 0.900 35 H 0.138 0.862 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.304 3.362 21.855 22.527 hybrid contribution -1.048 -1.097 -1.192 1.929 sum -5.352 2.265 20.663 21.465 Atomic orbital electron populations 1.20757 0.89843 1.03919 1.01810 1.22577 0.97203 0.94498 0.98957 1.21627 0.91754 0.98543 1.02638 1.19215 0.93786 0.96133 0.96831 1.21568 0.95582 0.98132 0.98696 1.21417 0.93791 0.99239 1.00232 1.21494 1.00976 0.95805 0.96833 1.21343 0.94751 0.99986 0.98962 1.21420 0.94641 0.99489 0.99214 1.21196 0.99428 0.89646 0.88624 1.47838 1.39477 1.38595 1.07979 1.22153 0.89719 0.90535 1.04864 1.20121 0.81369 0.82907 0.84238 1.90710 1.32310 1.35807 1.84251 1.23363 1.04460 1.03090 0.96370 1.85603 1.52180 1.53054 1.01741 1.23229 1.25523 1.23878 0.96642 0.90007 1.26129 0.95077 0.97733 1.00144 1.70197 1.27996 1.36930 1.19769 0.84906 0.78337 0.77592 0.77114 1.17930 1.19915 1.19889 0.92802 0.89516 0.90544 0.85689 0.84112 0.83598 0.84146 0.84945 0.86539 0.89979 0.86231 0.91460 0.91055 0.87532 0.87673 0.87936 0.92017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.84 9.74 71.23 0.69 -1.15 16 2 C -0.13 -3.01 5.58 -17.60 -0.10 -3.11 16 3 C -0.13 -3.25 9.39 23.65 0.22 -3.03 16 4 C -0.06 -1.68 5.20 -20.12 -0.10 -1.78 16 5 C -0.12 -2.96 7.27 22.52 0.16 -2.80 16 6 C -0.13 -2.94 10.03 22.23 0.22 -2.72 16 7 C -0.13 -3.20 10.04 22.32 0.22 -2.97 16 8 C -0.13 -3.56 10.03 22.23 0.22 -3.34 16 9 C -0.13 -3.85 9.79 22.52 0.22 -3.62 16 10 C 0.13 3.08 4.03 85.63 0.34 3.42 16 11 N -0.61 -16.15 2.73 -851.15 -2.33 -18.47 16 12 C 0.07 1.18 10.04 127.77 1.28 2.46 16 13 C 0.53 20.40 7.65 87.66 0.67 21.07 16 14 O -0.55 -26.60 15.52 -3.04 -0.05 -26.64 16 15 C -0.12 -5.01 4.77 71.23 0.34 -4.67 16 16 S -0.15 -8.70 20.57 -56.49 -1.16 -9.86 16 17 C -0.54 -31.55 9.50 67.95 0.65 -30.90 16 18 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 19 C 0.01 0.79 5.49 84.86 0.47 1.26 16 20 N -0.91 -56.77 13.22 21.65 0.29 -56.48 16 21 Si 1.00 43.92 29.55 68.60 2.03 45.95 16 22 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 25 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 26 H 0.09 1.08 8.12 -2.39 -0.02 1.06 16 27 H 0.08 1.11 8.07 -2.39 -0.02 1.09 16 28 H 0.13 2.91 8.06 -2.91 -0.02 2.88 16 29 H 0.14 2.69 6.35 -2.91 -0.02 2.67 16 30 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 31 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 32 H 0.13 3.03 8.06 -2.91 -0.02 3.01 16 33 H 0.12 3.34 8.06 -2.91 -0.02 3.32 16 34 H 0.08 2.38 3.99 -2.39 -0.01 2.37 16 35 H 0.12 1.77 7.75 -2.38 -0.02 1.76 16 36 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.07 1.28 6.65 -2.39 -0.02 1.26 16 38 H 0.11 1.06 7.79 -2.39 -0.02 1.04 16 39 H 0.11 3.93 7.41 -2.40 -0.02 3.91 16 40 H 0.10 3.87 8.11 -2.39 -0.02 3.85 16 41 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -79.92 358.42 5.31 -74.61 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 1.01 Total: 22.79 kcal Atomic # 6 Polarization: -37.40 SS G_CDS: 5.52 Total: -31.89 kcal Atomic # 7 Polarization: -72.91 SS G_CDS: -2.04 Total: -74.96 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -0.05 Total: -26.64 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: -8.70 SS G_CDS: -1.16 Total: -9.86 kcal Total: -79.92 5.31 -74.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427226281.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.241 kcal (2) G-P(sol) polarization free energy of solvation -79.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds