Wall clock time and date at job start Tue Mar 31 2020 08:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53010 * 109.47020 * 2 1 4 4 H 1.09001 * 109.87129 * 52.22224 * 3 2 1 5 5 C 1.54319 * 109.88225 * 173.23470 * 3 2 1 6 6 C 1.55154 * 102.94379 * 141.76706 * 5 3 2 7 7 C 1.54910 * 101.57885 * 324.49653 * 6 5 3 8 8 N 1.47016 * 110.01128 * 291.12140 * 3 2 1 9 9 C 1.34778 * 125.64775 * 61.52202 * 8 3 2 10 10 O 1.21552 * 119.99975 * 6.74639 * 9 8 3 11 11 C 1.47868 * 119.99876 * 186.74269 * 9 8 3 12 12 C 1.39669 * 120.10055 * 10.19130 * 11 9 8 13 13 C 1.38038 * 120.03936 * 180.02562 * 12 11 9 14 14 C 1.38184 * 120.24178 * 0.02562 * 13 12 11 15 15 C 1.39180 * 120.20065 * 0.02562 * 14 13 12 16 16 S 1.76199 * 120.01635 * 179.97438 * 15 14 13 17 17 C 1.76208 * 99.99851 * 265.04089 * 16 15 14 18 18 H 1.07992 * 120.00028 * 5.00962 * 17 16 15 19 19 C 1.38731 * 119.99913 * 185.01247 * 17 16 15 20 20 N 1.31617 * 119.99735 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00086 * 0.02562 * 19 17 16 22 22 H 1.48505 * 109.47008 * 90.00039 * 21 19 17 23 23 H 1.48499 * 109.47134 * 209.99753 * 21 19 17 24 24 H 1.48499 * 109.47406 * 330.00163 * 21 19 17 25 25 C 1.38871 * 119.96099 * 359.69606 * 15 14 13 26 26 H 1.08999 * 109.46969 * 199.34083 * 1 2 3 27 27 H 1.09007 * 109.47058 * 319.33945 * 1 2 3 28 28 H 1.08994 * 109.47242 * 79.34034 * 1 2 3 29 29 H 1.09000 * 109.47339 * 240.00845 * 2 1 3 30 30 H 1.09002 * 109.47614 * 120.00128 * 2 1 3 31 31 H 1.09001 * 110.72229 * 260.13482 * 5 3 2 32 32 H 1.08999 * 110.72214 * 23.22576 * 5 3 2 33 33 H 1.08999 * 111.00551 * 82.56908 * 6 5 3 34 34 H 1.09004 * 111.00748 * 206.38749 * 6 5 3 35 35 H 1.09002 * 110.36283 * 155.84595 * 7 6 5 36 36 H 1.08995 * 110.36911 * 278.06208 * 7 6 5 37 37 H 1.08003 * 119.98129 * 359.97438 * 12 11 9 38 38 H 1.08002 * 119.88272 * 179.97438 * 13 12 11 39 39 H 1.07998 * 119.89445 * 179.97438 * 14 13 12 40 40 H 0.97000 * 119.99772 * 180.02562 * 20 19 17 41 41 H 1.07998 * 120.12380 * 180.27919 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5714 2.0012 0.8102 5 6 3.5736 1.4571 0.1710 6 6 4.0170 2.6104 -0.7674 7 6 3.0068 2.4685 -1.9332 8 7 1.7383 2.0829 -1.2886 9 6 0.5062 2.2831 -1.7969 10 8 -0.4760 2.0347 -1.1253 11 6 0.3494 2.8050 -3.1715 12 6 1.4564 2.8907 -4.0188 13 6 1.3086 3.3786 -5.3016 14 6 0.0673 3.7845 -5.7531 15 6 -1.0424 3.7045 -4.9169 16 16 -2.6228 4.2241 -5.4974 17 6 -2.6416 5.8793 -4.8932 18 1 -1.7666 6.2876 -4.4096 19 6 -3.7806 6.6578 -5.0386 20 7 -3.7949 7.8939 -4.5869 21 14 -5.2945 5.9513 -5.8743 22 1 -6.1657 5.3076 -4.8585 23 1 -6.0428 7.0428 -6.5480 24 1 -4.8786 4.9418 -6.8809 25 6 -0.9044 3.2096 -3.6267 26 1 -0.3633 -0.9697 0.3403 27 1 -0.3633 0.7796 0.6696 28 1 -0.3633 0.1901 -1.0099 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8445 1.6747 1.2041 32 1 4.0062 0.5088 -0.1480 33 1 3.9120 3.5771 -0.2749 34 1 5.0392 2.4603 -1.1150 35 1 2.8937 3.4190 -2.4548 36 1 3.3334 1.6930 -2.6259 37 1 2.4288 2.5758 -3.6698 38 1 2.1665 3.4441 -5.9545 39 1 -0.0418 4.1658 -6.7576 40 1 -4.5914 8.4382 -4.6882 41 1 -1.7645 3.1421 -2.9772 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430689560.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:58 Heat of formation + Delta-G solvation = 8.532308 kcal Electronic energy + Delta-G solvation = -22572.986598 eV Core-core repulsion = 19351.582783 eV Total energy + Delta-G solvation = -3221.403814 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.70361 -38.39102 -37.29278 -33.71321 -32.49546 -32.05704 -30.68437 -30.32525 -28.24598 -25.67476 -24.81926 -23.28362 -22.57440 -21.69056 -21.06642 -19.36240 -18.06491 -17.05306 -16.86667 -16.30747 -15.58712 -15.04647 -14.78562 -14.49195 -14.33849 -13.94707 -13.79192 -13.46385 -13.31821 -13.13516 -12.90990 -12.82247 -12.43649 -12.30972 -12.05781 -11.53864 -11.37831 -11.15019 -11.14758 -11.09693 -11.01524 -10.78102 -10.69663 -10.36367 -9.90202 -9.59754 -9.19009 -9.07479 -8.66972 -8.52757 -8.12097 -7.12324 -6.32519 -4.07702 1.15509 1.62088 2.82018 2.96765 3.05075 3.27826 3.39302 3.51163 4.07621 4.21071 4.23364 4.26913 4.57522 4.75897 4.83892 4.91097 4.97557 5.06299 5.10747 5.15560 5.20761 5.26428 5.31857 5.40793 5.48531 5.59387 5.65741 5.72404 5.78945 5.82003 5.89235 5.96426 6.03836 6.20783 6.22639 6.35450 6.56792 6.60945 6.65531 6.85964 7.15598 7.49410 7.91724 8.29072 8.44918 9.11559 10.76983 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.021557 B = 0.003660 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.565963 B = 7649.251248 C = 8079.186737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.129 4.129 3 C 0.137 3.863 4 H 0.076 0.924 5 C -0.129 4.129 6 C -0.136 4.136 7 C 0.089 3.911 8 N -0.613 5.613 9 C 0.573 3.427 10 O -0.518 6.518 11 C -0.148 4.148 12 C -0.115 4.115 13 C -0.142 4.142 14 C -0.053 4.053 15 C -0.086 4.086 16 S -0.113 6.113 17 C -0.509 4.509 18 H 0.091 0.909 19 C 0.095 3.905 20 N -0.876 5.876 21 Si 0.857 3.143 22 H -0.265 1.265 23 H -0.273 1.273 24 H -0.239 1.239 25 C -0.018 4.018 26 H 0.035 0.965 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.145 0.855 38 H 0.124 0.876 39 H 0.132 0.868 40 H 0.272 0.728 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.577 -13.591 5.707 22.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.167 4.167 3 C 0.034 3.966 4 H 0.094 0.906 5 C -0.167 4.167 6 C -0.174 4.174 7 C -0.033 4.033 8 N -0.349 5.349 9 C 0.364 3.636 10 O -0.395 6.395 11 C -0.153 4.153 12 C -0.133 4.133 13 C -0.161 4.161 14 C -0.074 4.074 15 C -0.196 4.196 16 S 0.121 5.879 17 C -0.656 4.656 18 H 0.109 0.891 19 C -0.113 4.113 20 N -0.513 5.513 21 Si 0.682 3.318 22 H -0.190 1.190 23 H -0.198 1.198 24 H -0.163 1.163 25 C -0.039 4.039 26 H 0.054 0.946 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.162 0.838 38 H 0.142 0.858 39 H 0.149 0.851 40 H 0.082 0.918 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 15.986 -14.075 5.450 21.985 hybrid contribution 0.265 0.672 0.409 0.831 sum 16.251 -13.402 5.859 21.865 Atomic orbital electron populations 1.22120 0.94016 1.00031 1.04357 1.21949 0.97792 0.95304 1.01690 1.21701 0.94926 0.93703 0.86304 0.90584 1.22716 0.93924 0.99345 1.00695 1.22855 0.98940 0.99427 0.96228 1.22791 0.83823 1.00889 0.95834 1.48325 1.05269 1.60528 1.20731 1.18008 0.81525 0.77726 0.86325 1.90797 1.37802 1.50163 1.60763 1.19792 0.95101 1.06664 0.93774 1.22254 0.98837 0.98106 0.94072 1.21085 0.97465 1.01604 0.95984 1.21897 0.91481 0.94337 0.99714 1.22164 1.00103 1.01623 0.95758 1.83062 1.15388 1.17187 1.72287 1.22246 1.04426 0.93883 1.45026 0.89136 1.24735 0.98090 0.94283 0.94232 1.69923 1.29761 1.07581 1.43987 0.86737 0.83485 0.80205 0.81370 1.19021 1.19793 1.16322 1.21869 0.96155 0.91244 0.94667 0.94591 0.91897 0.90849 0.92077 0.91482 0.90069 0.90412 0.90350 0.89713 0.89127 0.90855 0.83786 0.85759 0.85057 0.91818 0.84334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 8.13 37.16 0.30 -1.67 16 2 C -0.13 -1.34 5.43 -26.73 -0.15 -1.48 16 3 C 0.14 1.42 3.03 -66.95 -0.20 1.22 16 4 H 0.08 0.89 7.99 -51.93 -0.41 0.47 16 5 C -0.13 -0.88 6.48 -24.90 -0.16 -1.04 16 6 C -0.14 -0.90 7.09 -24.58 -0.17 -1.08 16 7 C 0.09 0.79 4.89 -2.53 -0.01 0.78 16 8 N -0.61 -7.58 3.07 -164.11 -0.50 -8.09 16 9 C 0.57 9.39 7.02 -12.32 -0.09 9.30 16 10 O -0.52 -9.87 11.95 5.32 0.06 -9.81 16 11 C -0.15 -2.53 5.84 -104.99 -0.61 -3.15 16 12 C -0.11 -1.59 8.28 -39.12 -0.32 -1.91 16 13 C -0.14 -2.01 10.02 -39.67 -0.40 -2.41 16 14 C -0.05 -0.95 9.79 -39.25 -0.38 -1.33 16 15 C -0.09 -1.82 5.45 -39.00 -0.21 -2.03 16 16 S -0.11 -2.78 19.38 -107.50 -2.08 -4.86 16 17 C -0.51 -14.73 10.01 30.91 0.31 -14.42 16 18 H 0.09 2.84 8.02 -52.49 -0.42 2.42 16 19 C 0.10 2.77 5.50 -17.46 -0.10 2.67 16 20 N -0.88 -26.46 13.97 55.49 0.77 -25.68 16 21 Si 0.86 21.19 27.74 -169.99 -4.71 16.47 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.24 -5.72 6.74 56.52 0.38 -5.34 16 25 C -0.02 -0.36 9.34 -38.92 -0.36 -0.72 16 26 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.93 7.10 -51.92 -0.37 0.56 16 28 H 0.07 1.18 5.58 -51.93 -0.29 0.89 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.46 7.85 -51.93 -0.41 0.05 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.09 0.84 6.12 -51.93 -0.32 0.52 16 36 H 0.07 0.54 7.24 -51.93 -0.38 0.16 16 37 H 0.15 1.48 3.40 -52.48 -0.18 1.30 16 38 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.13 2.19 8.06 -52.49 -0.42 1.77 16 40 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.14 3.03 7.68 -52.49 -0.40 2.62 16 LS Contribution 337.60 15.07 5.09 5.09 Total: -1.00 -32.65 337.60 -9.65 -42.31 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -5.72 Total: 1.85 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: -2.56 Total: -17.27 kcal Atomic # 7 Polarization: -34.04 SS G_CDS: 0.27 Total: -33.77 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.06 Total: -9.81 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.71 Total: 16.47 kcal Atomic # 16 Polarization: -2.78 SS G_CDS: -2.08 Total: -4.86 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.65 -9.65 -42.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430689560.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.839 kcal (2) G-P(sol) polarization free energy of solvation -32.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds