Wall clock time and date at job start Tue Mar 31 2020 08:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53010 * 109.47020 * 2 1 4 4 H 1.09001 * 109.87129 * 52.22224 * 3 2 1 5 5 C 1.54319 * 109.88225 * 173.23470 * 3 2 1 6 6 C 1.55154 * 102.94379 * 141.76706 * 5 3 2 7 7 C 1.54910 * 101.57885 * 324.49653 * 6 5 3 8 8 N 1.47016 * 110.01128 * 291.12140 * 3 2 1 9 9 C 1.34778 * 125.64775 * 61.52202 * 8 3 2 10 10 O 1.21552 * 119.99975 * 6.74639 * 9 8 3 11 11 C 1.47868 * 119.99876 * 186.74269 * 9 8 3 12 12 C 1.39669 * 120.10055 * 10.19130 * 11 9 8 13 13 C 1.38038 * 120.03936 * 180.02562 * 12 11 9 14 14 C 1.38184 * 120.24178 * 0.02562 * 13 12 11 15 15 C 1.39180 * 120.20065 * 0.02562 * 14 13 12 16 16 S 1.76199 * 120.01635 * 179.97438 * 15 14 13 17 17 C 1.76208 * 99.99851 * 265.04089 * 16 15 14 18 18 H 1.07992 * 120.00028 * 5.00962 * 17 16 15 19 19 C 1.38731 * 119.99913 * 185.01247 * 17 16 15 20 20 N 1.31617 * 119.99735 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00086 * 0.02562 * 19 17 16 22 22 H 1.48505 * 109.47008 * 90.00039 * 21 19 17 23 23 H 1.48499 * 109.47134 * 209.99753 * 21 19 17 24 24 H 1.48499 * 109.47406 * 330.00163 * 21 19 17 25 25 C 1.38871 * 119.96099 * 359.69606 * 15 14 13 26 26 H 1.08999 * 109.46969 * 199.34083 * 1 2 3 27 27 H 1.09007 * 109.47058 * 319.33945 * 1 2 3 28 28 H 1.08994 * 109.47242 * 79.34034 * 1 2 3 29 29 H 1.09000 * 109.47339 * 240.00845 * 2 1 3 30 30 H 1.09002 * 109.47614 * 120.00128 * 2 1 3 31 31 H 1.09001 * 110.72229 * 260.13482 * 5 3 2 32 32 H 1.08999 * 110.72214 * 23.22576 * 5 3 2 33 33 H 1.08999 * 111.00551 * 82.56908 * 6 5 3 34 34 H 1.09004 * 111.00748 * 206.38749 * 6 5 3 35 35 H 1.09002 * 110.36283 * 155.84595 * 7 6 5 36 36 H 1.08995 * 110.36911 * 278.06208 * 7 6 5 37 37 H 1.08003 * 119.98129 * 359.97438 * 12 11 9 38 38 H 1.08002 * 119.88272 * 179.97438 * 13 12 11 39 39 H 1.07998 * 119.89445 * 179.97438 * 14 13 12 40 40 H 0.97000 * 119.99772 * 180.02562 * 20 19 17 41 41 H 1.07998 * 120.12380 * 180.27919 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5714 2.0012 0.8102 5 6 3.5736 1.4571 0.1710 6 6 4.0170 2.6104 -0.7674 7 6 3.0068 2.4685 -1.9332 8 7 1.7383 2.0829 -1.2886 9 6 0.5062 2.2831 -1.7969 10 8 -0.4760 2.0347 -1.1253 11 6 0.3494 2.8050 -3.1715 12 6 1.4564 2.8907 -4.0188 13 6 1.3086 3.3786 -5.3016 14 6 0.0673 3.7845 -5.7531 15 6 -1.0424 3.7045 -4.9169 16 16 -2.6228 4.2241 -5.4974 17 6 -2.6416 5.8793 -4.8932 18 1 -1.7666 6.2876 -4.4096 19 6 -3.7806 6.6578 -5.0386 20 7 -3.7949 7.8939 -4.5869 21 14 -5.2945 5.9513 -5.8743 22 1 -6.1657 5.3076 -4.8585 23 1 -6.0428 7.0428 -6.5480 24 1 -4.8786 4.9418 -6.8809 25 6 -0.9044 3.2096 -3.6267 26 1 -0.3633 -0.9697 0.3403 27 1 -0.3633 0.7796 0.6696 28 1 -0.3633 0.1901 -1.0099 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8445 1.6747 1.2041 32 1 4.0062 0.5088 -0.1480 33 1 3.9120 3.5771 -0.2749 34 1 5.0392 2.4603 -1.1150 35 1 2.8937 3.4190 -2.4548 36 1 3.3334 1.6930 -2.6259 37 1 2.4288 2.5758 -3.6698 38 1 2.1665 3.4441 -5.9545 39 1 -0.0418 4.1658 -6.7576 40 1 -4.5914 8.4382 -4.6882 41 1 -1.7645 3.1421 -2.9772 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430689560.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:57 Heat of formation + Delta-G solvation = -11.369805 kcal Electronic energy + Delta-G solvation = -22573.849618 eV Core-core repulsion = 19351.582783 eV Total energy + Delta-G solvation = -3222.266835 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.77760 -39.59485 -38.43000 -34.74368 -34.67991 -32.99102 -32.04643 -31.50751 -29.08892 -27.94216 -25.88138 -24.36114 -23.81630 -22.64366 -21.96204 -20.50645 -19.85955 -18.47511 -17.83586 -17.56177 -17.15089 -16.83116 -16.03990 -15.78032 -15.48214 -15.06906 -14.95369 -14.77186 -14.55548 -14.26047 -13.98987 -13.97989 -13.66500 -13.42779 -13.30317 -13.11609 -13.07457 -12.72754 -12.40785 -12.38357 -11.92122 -11.79519 -11.61321 -11.54647 -11.39989 -11.24598 -11.04403 -10.78882 -10.00756 -9.74654 -9.56321 -9.16709 -8.56226 -6.30493 -0.19595 0.19217 1.04302 1.29383 1.42032 1.63663 1.75847 1.93673 2.19753 2.57717 2.82017 2.94712 3.38698 3.57450 3.77590 3.88577 3.92195 4.04423 4.18277 4.21698 4.31358 4.39216 4.42440 4.49792 4.57237 4.64608 4.70121 4.86658 4.92072 4.95185 5.03147 5.06868 5.13250 5.18411 5.20334 5.28897 5.39316 5.41812 5.49766 5.54786 5.66486 5.84269 6.07358 6.42823 6.86230 7.10118 8.57543 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.021557 B = 0.003660 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.565963 B = 7649.251248 C = 8079.186737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.122 4.122 3 C 0.126 3.874 4 H 0.054 0.946 5 C -0.117 4.117 6 C -0.127 4.127 7 C 0.072 3.928 8 N -0.608 5.608 9 C 0.563 3.437 10 O -0.561 6.561 11 C -0.155 4.155 12 C -0.090 4.090 13 C -0.122 4.122 14 C -0.062 4.062 15 C -0.119 4.119 16 S -0.116 6.116 17 C -0.525 4.525 18 H 0.045 0.955 19 C 0.042 3.958 20 N -0.919 5.919 21 Si 0.922 3.078 22 H -0.263 1.263 23 H -0.255 1.255 24 H -0.227 1.227 25 C -0.045 4.045 26 H 0.046 0.954 27 H 0.037 0.963 28 H 0.041 0.959 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.070 0.930 34 H 0.118 0.882 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.193 0.807 38 H 0.179 0.821 39 H 0.140 0.860 40 H 0.278 0.722 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.563 -15.628 4.903 27.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.160 4.160 3 C 0.024 3.976 4 H 0.072 0.928 5 C -0.155 4.155 6 C -0.165 4.165 7 C -0.049 4.049 8 N -0.341 5.341 9 C 0.353 3.647 10 O -0.442 6.442 11 C -0.160 4.160 12 C -0.108 4.108 13 C -0.141 4.141 14 C -0.082 4.082 15 C -0.230 4.230 16 S 0.118 5.882 17 C -0.672 4.672 18 H 0.063 0.937 19 C -0.163 4.163 20 N -0.557 5.557 21 Si 0.742 3.258 22 H -0.188 1.188 23 H -0.179 1.179 24 H -0.150 1.150 25 C -0.067 4.067 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.088 0.912 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.117 0.883 33 H 0.089 0.911 34 H 0.137 0.863 35 H 0.107 0.893 36 H 0.122 0.878 37 H 0.209 0.791 38 H 0.196 0.804 39 H 0.158 0.842 40 H 0.088 0.912 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 20.032 -16.115 4.649 26.126 hybrid contribution -0.749 1.256 0.789 1.662 sum 19.283 -14.859 5.438 24.944 Atomic orbital electron populations 1.22006 0.96829 0.99553 1.01743 1.21923 0.95065 0.95701 1.03325 1.21943 0.97885 0.93125 0.84685 0.92799 1.22721 0.90262 1.00602 1.01890 1.22862 0.99808 0.98939 0.94900 1.23172 0.82566 1.01661 0.97466 1.48402 1.05093 1.59134 1.21473 1.18024 0.82589 0.77949 0.86122 1.90786 1.39652 1.52134 1.61596 1.19969 0.94746 1.06289 0.94972 1.22853 0.99468 0.95322 0.93128 1.21632 0.97299 0.98733 0.96472 1.22095 0.91901 0.94542 0.99699 1.22059 0.99280 1.04603 0.97079 1.82600 1.19429 1.13885 1.72306 1.22374 1.03146 0.96851 1.44819 0.93686 1.25715 1.01267 0.94534 0.94773 1.70027 1.31118 1.09063 1.45464 0.85778 0.79237 0.80148 0.80633 1.18791 1.17930 1.14999 1.21602 0.96987 0.93732 0.94372 0.93539 0.94385 0.93981 0.91223 0.88809 0.88605 0.88272 0.91143 0.86339 0.89333 0.87787 0.79069 0.80407 0.84215 0.91217 0.87884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.97 8.13 71.98 0.59 -3.39 16 2 C -0.12 -2.31 5.43 30.60 0.17 -2.14 16 3 C 0.13 2.40 3.03 45.34 0.14 2.54 16 4 H 0.05 1.26 7.99 -2.39 -0.02 1.24 16 5 C -0.12 -1.08 6.48 31.78 0.21 -0.87 16 6 C -0.13 -1.06 7.09 31.99 0.23 -0.83 16 7 C 0.07 0.96 4.89 86.86 0.43 1.38 16 8 N -0.61 -14.05 3.07 -791.40 -2.43 -16.47 16 9 C 0.56 18.89 7.02 86.79 0.61 19.50 16 10 O -0.56 -23.13 11.95 -3.88 -0.05 -23.18 16 11 C -0.15 -5.32 5.84 -20.11 -0.12 -5.44 16 12 C -0.09 -2.20 8.28 22.57 0.19 -2.02 16 13 C -0.12 -3.00 10.02 22.21 0.22 -2.78 16 14 C -0.06 -2.13 9.79 22.48 0.22 -1.91 16 15 C -0.12 -5.26 5.45 22.65 0.12 -5.13 16 16 S -0.12 -5.95 19.38 -56.49 -1.09 -7.04 16 17 C -0.53 -32.20 10.01 67.94 0.68 -31.52 16 18 H 0.04 3.06 8.02 -2.91 -0.02 3.03 16 19 C 0.04 2.55 5.50 84.84 0.47 3.01 16 20 N -0.92 -57.81 13.97 21.64 0.30 -57.51 16 21 Si 0.92 44.82 27.74 68.60 1.90 46.73 16 22 H -0.26 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 24 H -0.23 -10.48 6.74 99.48 0.67 -9.81 16 25 C -0.05 -1.96 9.34 22.70 0.21 -1.75 16 26 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.04 1.20 7.10 -2.38 -0.02 1.19 16 28 H 0.04 1.43 5.58 -2.39 -0.01 1.41 16 29 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.10 0.57 7.85 -2.39 -0.02 0.55 16 33 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.12 0.30 8.14 -2.38 -0.02 0.28 16 35 H 0.09 1.25 6.12 -2.39 -0.01 1.23 16 36 H 0.10 0.84 7.24 -2.39 -0.02 0.82 16 37 H 0.19 2.83 3.40 -2.91 -0.01 2.82 16 38 H 0.18 2.59 8.06 -2.91 -0.02 2.57 16 39 H 0.14 4.52 8.06 -2.91 -0.02 4.49 16 40 H 0.28 16.05 8.31 -92.71 -0.77 15.28 16 41 H 0.10 5.07 7.68 -2.91 -0.02 5.05 16 Total: -1.00 -80.49 337.60 3.98 -76.51 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 0.99 Total: 12.32 kcal Atomic # 6 Polarization: -35.70 SS G_CDS: 4.35 Total: -31.35 kcal Atomic # 7 Polarization: -71.86 SS G_CDS: -2.13 Total: -73.98 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.05 Total: -23.18 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.90 Total: 46.73 kcal Atomic # 16 Polarization: -5.95 SS G_CDS: -1.09 Total: -7.04 kcal Total: -80.49 3.98 -76.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430689560.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.143 kcal (2) G-P(sol) polarization free energy of solvation -80.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds