Wall clock time and date at job start Tue Mar 31 2020 08:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50707 * 119.99844 * 2 1 4 4 C 1.31004 * 120.00148 * 179.97438 * 2 1 3 5 5 C 1.50692 * 119.99784 * 353.75420 * 4 2 1 6 6 S 1.81403 * 109.47127 * 113.56416 * 5 4 2 7 7 C 1.81401 * 103.00299 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.46957 * 179.97438 * 7 6 5 9 9 O 1.21278 * 120.00489 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99386 * 179.97438 * 8 7 6 11 11 C 1.39242 * 119.99915 * 185.24744 * 10 8 7 12 12 C 1.39484 * 119.82909 * 324.43852 * 11 10 8 13 13 C 1.36379 * 120.16304 * 180.29691 * 12 11 10 14 14 C 1.40865 * 119.82928 * 359.47397 * 13 12 11 15 15 C 1.41152 * 120.16512 * 180.25015 * 14 13 12 16 16 H 1.07998 * 120.00210 * 213.43265 * 15 14 13 17 17 C 1.39914 * 120.00071 * 33.43536 * 15 14 13 18 18 N 1.30874 * 119.99509 * 6.39395 * 17 15 14 19 19 Si 1.86795 * 120.00090 * 186.39633 * 17 15 14 20 20 H 1.48496 * 109.47346 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47129 * 120.00162 * 19 17 15 22 22 H 1.48511 * 109.46897 * 239.99642 * 19 17 15 23 23 C 1.40870 * 119.67301 * 0.52413 * 14 13 12 24 24 C 1.36378 * 119.82673 * 359.72889 * 23 14 13 25 25 H 1.09003 * 109.46745 * 272.71920 * 1 2 3 26 26 H 1.08998 * 109.47283 * 32.72158 * 1 2 3 27 27 H 1.08996 * 109.47115 * 152.72293 * 1 2 3 28 28 H 1.09004 * 109.46575 * 269.99768 * 3 2 1 29 29 H 1.08995 * 109.46965 * 29.99697 * 3 2 1 30 30 H 1.09001 * 109.47191 * 150.00349 * 3 2 1 31 31 H 1.08000 * 119.99656 * 173.75106 * 4 2 1 32 32 H 1.09000 * 109.47577 * 353.56722 * 5 4 2 33 33 H 1.09004 * 109.47091 * 233.56130 * 5 4 2 34 34 H 1.09003 * 109.47085 * 59.99881 * 7 6 5 35 35 H 1.09003 * 109.46698 * 299.99931 * 7 6 5 36 36 H 0.96993 * 120.00597 * 5.24953 * 10 8 7 37 37 H 1.07999 * 119.92117 * 0.02562 * 12 11 10 38 38 H 1.08003 * 120.08639 * 179.70243 * 13 12 11 39 39 H 0.96996 * 119.99634 * 180.02562 * 18 17 15 40 40 H 1.08000 * 120.08278 * 179.71025 * 23 14 13 41 41 H 1.08000 * 119.91327 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1621 -1.1345 0.0005 5 6 1.4153 -2.4356 0.1431 6 16 1.5583 -3.3866 -1.3951 7 6 0.6128 -4.8919 -1.0337 8 6 0.6365 -5.8006 -2.2356 9 8 1.2328 -5.4660 -3.2372 10 7 -0.0043 -6.9857 -2.1970 11 6 0.1075 -7.8727 -3.2645 12 6 0.1866 -7.3829 -4.5682 13 6 0.2902 -8.2457 -5.6192 14 6 0.3284 -9.6342 -5.3848 15 6 0.4408 -10.5334 -6.4671 16 1 -0.0415 -11.4986 -6.4196 17 6 1.1770 -10.1744 -7.6013 18 7 1.8639 -9.0604 -7.6099 19 14 1.1795 -11.2849 -9.1033 20 1 0.3310 -12.4749 -8.8405 21 1 0.6413 -10.5406 -10.2702 22 1 2.5688 -11.7223 -9.3932 23 6 0.2480 -10.1212 -4.0654 24 6 0.1395 -9.2463 -3.0249 25 1 -0.3633 0.0488 1.0266 26 1 -0.3634 0.8646 -0.5555 27 1 -0.3633 -0.9134 -0.4710 28 1 2.4422 1.6197 -1.0277 29 1 1.6714 2.0648 0.5138 30 1 3.2130 1.1749 0.5138 31 1 3.2372 -1.1372 -0.1013 32 1 0.3643 -2.2309 0.3472 33 1 1.8402 -3.0101 0.9662 34 1 -0.4181 -4.6261 -0.7998 35 1 1.0582 -5.4047 -0.1811 36 1 -0.5433 -7.2208 -1.4257 37 1 0.1614 -6.3180 -4.7460 38 1 0.3465 -7.8653 -6.6285 39 1 2.3740 -8.8113 -8.3964 40 1 0.2719 -11.1846 -3.8785 41 1 0.0782 -9.6181 -2.0128 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000446111293.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:41 Heat of formation + Delta-G solvation = -5.788559 kcal Electronic energy + Delta-G solvation = -20951.299858 eV Core-core repulsion = 17729.275044 eV Total energy + Delta-G solvation = -3222.024814 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.61784 -37.25550 -37.11144 -34.45087 -32.95294 -30.74473 -30.33411 -29.46500 -28.47116 -28.08777 -24.96747 -24.57238 -21.58832 -21.07226 -19.65753 -18.24592 -17.29516 -17.12032 -16.44440 -16.04410 -15.66679 -15.27397 -14.99919 -14.76681 -14.27877 -13.95936 -13.65932 -13.48674 -13.15826 -12.82024 -12.70451 -12.64317 -12.41467 -12.18685 -12.05808 -11.75135 -11.71691 -11.49695 -11.28363 -11.14949 -10.90014 -10.51908 -10.07744 -9.93603 -9.88224 -9.47394 -9.08710 -8.91269 -8.74160 -7.64046 -7.53565 -6.93002 -6.63997 -4.31237 1.12985 2.12986 2.54747 2.60079 2.98232 3.08403 3.11490 3.16314 3.30020 3.69615 3.98837 4.39682 4.63076 4.70107 4.81644 4.95691 4.97533 5.02739 5.15982 5.18225 5.24940 5.38435 5.44600 5.51724 5.67564 5.68362 5.72020 6.12118 6.33960 6.38577 6.56371 6.76509 6.97006 7.04073 7.18284 7.28633 7.59807 7.65579 7.93535 8.08461 8.16347 8.31061 8.64413 8.71570 8.92147 8.99988 10.30643 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.029548 B = 0.002335 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.375852 B =11989.177853 C =12648.947783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.112 4.112 3 C -0.118 4.118 4 C -0.150 4.150 5 C -0.083 4.083 6 S -0.174 6.174 7 C -0.128 4.128 8 C 0.513 3.487 9 O -0.505 6.505 10 N -0.649 5.649 11 C 0.000 4.000 12 C -0.090 4.090 13 C -0.144 4.144 14 C 0.106 3.894 15 C -0.464 4.464 16 H 0.077 0.923 17 C 0.070 3.930 18 N -0.802 5.802 19 Si 0.912 3.088 20 H -0.262 1.262 21 H -0.273 1.273 22 H -0.275 1.275 23 C -0.207 4.207 24 C -0.109 4.109 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.118 0.882 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.395 0.605 37 H 0.108 0.892 38 H 0.120 0.880 39 H 0.279 0.721 40 H 0.097 0.903 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.861 14.033 15.773 21.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.116 4.116 3 C -0.175 4.175 4 C -0.169 4.169 5 C -0.231 4.231 6 S 0.055 5.945 7 C -0.280 4.280 8 C 0.297 3.703 9 O -0.380 6.380 10 N -0.293 5.293 11 C -0.092 4.092 12 C -0.110 4.110 13 C -0.164 4.164 14 C 0.104 3.896 15 C -0.494 4.494 16 H 0.095 0.905 17 C -0.146 4.146 18 N -0.428 5.428 19 Si 0.737 3.263 20 H -0.186 1.186 21 H -0.199 1.199 22 H -0.200 1.200 23 C -0.227 4.227 24 C -0.129 4.129 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.136 0.864 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.228 0.772 37 H 0.126 0.874 38 H 0.138 0.862 39 H 0.090 0.910 40 H 0.115 0.885 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.723 14.632 13.968 20.302 hybrid contribution -0.704 -1.038 0.969 1.584 sum -2.426 13.594 14.936 20.342 Atomic orbital electron populations 1.20962 0.92282 1.03087 1.01986 1.21677 0.95981 0.94999 0.98953 1.20833 0.99615 0.94633 1.02374 1.22020 0.99676 0.91464 1.03739 1.22684 1.03497 0.97708 0.99168 1.87850 1.70169 1.16555 1.19966 1.23534 1.04488 0.98311 1.01652 1.19589 0.79984 0.82412 0.88297 1.90765 1.42301 1.72735 1.32168 1.42838 1.48737 1.16916 1.20766 1.17218 1.17665 0.87972 0.86374 1.20608 1.00169 0.99143 0.91058 1.21053 1.04209 0.93168 0.97995 1.17711 0.87699 0.92603 0.91634 1.19530 1.28523 1.02112 0.99266 0.90477 1.25909 0.93717 0.95405 0.99583 1.69821 1.22098 1.21388 1.29484 0.86198 0.78741 0.80595 0.80741 1.18571 1.19861 1.20039 1.20654 1.12067 0.97371 0.92625 1.20072 1.03868 0.91499 0.97445 0.91514 0.91516 0.91047 0.91195 0.91718 0.91734 0.86404 0.89376 0.89489 0.87733 0.87606 0.77162 0.87406 0.86184 0.90973 0.88494 0.89139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.92 9.17 36.01 0.33 -0.59 16 2 C -0.11 -0.93 6.05 -101.06 -0.61 -1.54 16 3 C -0.12 -0.78 10.03 36.01 0.36 -0.42 16 4 C -0.15 -1.40 9.10 -36.03 -0.33 -1.73 16 5 C -0.08 -0.79 5.96 36.00 0.21 -0.57 16 6 S -0.17 -2.41 20.86 -107.50 -2.24 -4.65 16 7 C -0.13 -1.59 6.43 36.00 0.23 -1.36 16 8 C 0.51 9.13 7.69 -10.99 -0.08 9.05 16 9 O -0.50 -11.53 13.28 5.56 0.07 -11.46 16 10 N -0.65 -11.25 5.30 -9.74 -0.05 -11.30 16 11 C 0.00 0.00 6.30 -83.57 -0.53 -0.53 16 12 C -0.09 -2.27 8.62 -39.79 -0.34 -2.61 16 13 C -0.14 -3.91 8.57 -39.26 -0.34 -4.25 16 14 C 0.11 2.87 5.51 -106.80 -0.59 2.28 16 15 C -0.46 -12.45 9.03 -37.85 -0.34 -12.79 16 16 H 0.08 1.97 7.85 -52.49 -0.41 1.56 16 17 C 0.07 1.81 5.30 -17.33 -0.09 1.72 16 18 N -0.80 -21.71 10.94 55.55 0.61 -21.10 16 19 Si 0.91 19.19 29.56 -169.99 -5.03 14.17 16 20 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 21 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 22 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 23 C -0.21 -5.02 9.74 -39.26 -0.38 -5.41 16 24 C -0.11 -2.37 9.90 -39.79 -0.39 -2.77 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.44 8.13 -51.93 -0.42 0.02 16 27 H 0.07 0.58 6.23 -51.93 -0.32 0.25 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.35 8.12 -51.93 -0.42 -0.07 16 30 H 0.06 0.39 8.06 -51.93 -0.42 -0.03 16 31 H 0.12 1.09 8.05 -52.49 -0.42 0.67 16 32 H 0.09 0.72 5.62 -51.92 -0.29 0.43 16 33 H 0.09 0.72 8.14 -51.92 -0.42 0.30 16 34 H 0.10 1.00 8.14 -51.92 -0.42 0.57 16 35 H 0.11 1.05 8.14 -51.92 -0.42 0.63 16 36 H 0.40 5.10 8.82 -40.82 -0.36 4.74 16 37 H 0.11 2.75 6.21 -52.49 -0.33 2.43 16 38 H 0.12 3.40 6.42 -52.48 -0.34 3.06 16 39 H 0.28 6.92 8.30 -40.82 -0.34 6.58 16 40 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 41 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 357.31 15.07 5.38 5.38 Total: -1.00 -31.92 357.31 -9.97 -41.89 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -5.83 Total: 8.59 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: -2.89 Total: -21.52 kcal Atomic # 7 Polarization: -32.96 SS G_CDS: 0.56 Total: -32.40 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.07 Total: -11.46 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.17 kcal Atomic # 16 Polarization: -2.41 SS G_CDS: -2.24 Total: -4.65 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.92 -9.97 -41.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000446111293.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.102 kcal (2) G-P(sol) polarization free energy of solvation -31.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds