Wall clock time and date at job start Tue Mar 31 2020 08:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50707 * 119.99844 * 2 1 4 4 C 1.31004 * 120.00148 * 179.97438 * 2 1 3 5 5 C 1.50692 * 119.99784 * 353.75420 * 4 2 1 6 6 S 1.81403 * 109.47127 * 113.56416 * 5 4 2 7 7 C 1.81401 * 103.00299 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.46957 * 179.97438 * 7 6 5 9 9 O 1.21278 * 120.00489 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99386 * 179.97438 * 8 7 6 11 11 C 1.39242 * 119.99915 * 185.24744 * 10 8 7 12 12 C 1.39484 * 119.82909 * 324.43852 * 11 10 8 13 13 C 1.36379 * 120.16304 * 180.29691 * 12 11 10 14 14 C 1.40865 * 119.82928 * 359.47397 * 13 12 11 15 15 C 1.41152 * 120.16512 * 180.25015 * 14 13 12 16 16 H 1.07998 * 120.00210 * 213.43265 * 15 14 13 17 17 C 1.39914 * 120.00071 * 33.43536 * 15 14 13 18 18 N 1.30874 * 119.99509 * 6.39395 * 17 15 14 19 19 Si 1.86795 * 120.00090 * 186.39633 * 17 15 14 20 20 H 1.48496 * 109.47346 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47129 * 120.00162 * 19 17 15 22 22 H 1.48511 * 109.46897 * 239.99642 * 19 17 15 23 23 C 1.40870 * 119.67301 * 0.52413 * 14 13 12 24 24 C 1.36378 * 119.82673 * 359.72889 * 23 14 13 25 25 H 1.09003 * 109.46745 * 272.71920 * 1 2 3 26 26 H 1.08998 * 109.47283 * 32.72158 * 1 2 3 27 27 H 1.08996 * 109.47115 * 152.72293 * 1 2 3 28 28 H 1.09004 * 109.46575 * 269.99768 * 3 2 1 29 29 H 1.08995 * 109.46965 * 29.99697 * 3 2 1 30 30 H 1.09001 * 109.47191 * 150.00349 * 3 2 1 31 31 H 1.08000 * 119.99656 * 173.75106 * 4 2 1 32 32 H 1.09000 * 109.47577 * 353.56722 * 5 4 2 33 33 H 1.09004 * 109.47091 * 233.56130 * 5 4 2 34 34 H 1.09003 * 109.47085 * 59.99881 * 7 6 5 35 35 H 1.09003 * 109.46698 * 299.99931 * 7 6 5 36 36 H 0.96993 * 120.00597 * 5.24953 * 10 8 7 37 37 H 1.07999 * 119.92117 * 0.02562 * 12 11 10 38 38 H 1.08003 * 120.08639 * 179.70243 * 13 12 11 39 39 H 0.96996 * 119.99634 * 180.02562 * 18 17 15 40 40 H 1.08000 * 120.08278 * 179.71025 * 23 14 13 41 41 H 1.08000 * 119.91327 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1621 -1.1345 0.0005 5 6 1.4153 -2.4356 0.1431 6 16 1.5583 -3.3866 -1.3951 7 6 0.6128 -4.8919 -1.0337 8 6 0.6365 -5.8006 -2.2356 9 8 1.2328 -5.4660 -3.2372 10 7 -0.0043 -6.9857 -2.1970 11 6 0.1075 -7.8727 -3.2645 12 6 0.1866 -7.3829 -4.5682 13 6 0.2902 -8.2457 -5.6192 14 6 0.3284 -9.6342 -5.3848 15 6 0.4408 -10.5334 -6.4671 16 1 -0.0415 -11.4986 -6.4196 17 6 1.1770 -10.1744 -7.6013 18 7 1.8639 -9.0604 -7.6099 19 14 1.1795 -11.2849 -9.1033 20 1 0.3310 -12.4749 -8.8405 21 1 0.6413 -10.5406 -10.2702 22 1 2.5688 -11.7223 -9.3932 23 6 0.2480 -10.1212 -4.0654 24 6 0.1395 -9.2463 -3.0249 25 1 -0.3633 0.0488 1.0266 26 1 -0.3634 0.8646 -0.5555 27 1 -0.3633 -0.9134 -0.4710 28 1 2.4422 1.6197 -1.0277 29 1 1.6714 2.0648 0.5138 30 1 3.2130 1.1749 0.5138 31 1 3.2372 -1.1372 -0.1013 32 1 0.3643 -2.2309 0.3472 33 1 1.8402 -3.0101 0.9662 34 1 -0.4181 -4.6261 -0.7998 35 1 1.0582 -5.4047 -0.1811 36 1 -0.5433 -7.2208 -1.4257 37 1 0.1614 -6.3180 -4.7460 38 1 0.3465 -7.8653 -6.6285 39 1 2.3740 -8.8113 -8.3964 40 1 0.2719 -11.1846 -3.8785 41 1 0.0782 -9.6181 -2.0128 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000446111293.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:40 Heat of formation + Delta-G solvation = -23.661206 kcal Electronic energy + Delta-G solvation = -20952.074874 eV Core-core repulsion = 17729.275044 eV Total energy + Delta-G solvation = -3222.799830 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.19582 -39.06158 -37.75948 -36.19991 -34.74999 -31.94869 -31.39311 -31.21837 -30.10106 -28.64108 -26.67191 -25.39644 -23.36581 -22.90146 -21.27266 -19.24728 -19.03506 -18.48333 -17.91642 -17.21373 -16.96578 -16.65945 -16.11556 -15.76817 -15.47388 -15.19863 -14.98832 -14.88417 -14.50145 -14.10681 -14.03294 -13.90442 -13.54061 -13.39069 -13.23259 -13.11418 -12.84849 -12.78495 -12.65086 -12.36212 -12.34020 -11.92281 -11.78990 -11.67777 -11.24903 -10.97046 -10.85607 -10.51165 -9.59656 -9.47515 -8.82188 -8.66383 -8.55412 -6.32287 0.24993 0.78538 1.11457 1.31887 1.37966 1.41584 1.54087 1.71953 1.80520 2.22128 2.33509 2.79565 3.66940 3.73541 3.80537 4.02789 4.08834 4.18850 4.24437 4.41019 4.42415 4.47284 4.55817 4.71365 4.81602 4.90556 4.95995 4.96644 5.10186 5.13685 5.15068 5.15622 5.30314 5.40176 5.68286 5.71115 5.83806 5.92257 6.05018 6.10831 6.33344 6.64509 6.68689 6.93987 6.99626 7.35319 8.41231 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.029548 B = 0.002335 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.375852 B =11989.177853 C =12648.947783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.104 4.104 3 C -0.121 4.121 4 C -0.175 4.175 5 C -0.056 4.056 6 S -0.263 6.263 7 C -0.103 4.103 8 C 0.508 3.492 9 O -0.561 6.561 10 N -0.637 5.637 11 C 0.017 3.983 12 C -0.106 4.106 13 C -0.169 4.169 14 C 0.071 3.929 15 C -0.497 4.497 16 H 0.082 0.918 17 C 0.023 3.977 18 N -0.845 5.845 19 Si 0.990 3.010 20 H -0.252 1.252 21 H -0.268 1.268 22 H -0.269 1.269 23 C -0.212 4.212 24 C -0.102 4.102 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.422 0.578 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.283 0.717 40 H 0.114 0.886 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.879 13.990 18.770 23.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.109 4.109 3 C -0.177 4.177 4 C -0.194 4.194 5 C -0.203 4.203 6 S -0.035 6.035 7 C -0.254 4.254 8 C 0.295 3.705 9 O -0.439 6.439 10 N -0.283 5.283 11 C -0.077 4.077 12 C -0.126 4.126 13 C -0.189 4.189 14 C 0.069 3.931 15 C -0.527 4.527 16 H 0.100 0.900 17 C -0.189 4.189 18 N -0.473 5.473 19 Si 0.810 3.190 20 H -0.175 1.175 21 H -0.193 1.193 22 H -0.194 1.194 23 C -0.232 4.232 24 C -0.122 4.122 25 H 0.102 0.898 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.129 0.871 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.160 0.840 35 H 0.158 0.842 36 H 0.260 0.740 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.093 0.907 40 H 0.132 0.868 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.774 14.585 17.030 22.593 hybrid contribution -0.412 -0.827 0.235 0.953 sum -3.186 13.758 17.265 22.305 Atomic orbital electron populations 1.21018 0.91420 1.03002 1.03103 1.21996 0.96792 0.95305 0.96759 1.20898 0.99990 0.94264 1.02570 1.22069 0.99629 0.91941 1.05796 1.22671 1.04663 0.96725 0.96222 1.88238 1.71295 1.19099 1.24867 1.23396 1.06616 0.96097 0.99270 1.20541 0.78356 0.82425 0.89171 1.90763 1.44431 1.73871 1.34866 1.42714 1.49156 1.16207 1.20271 1.17286 1.14608 0.89261 0.86540 1.20625 1.01218 0.98253 0.92536 1.20918 1.06495 0.94075 0.97404 1.18054 0.89123 0.92550 0.93408 1.19813 1.29823 1.02561 1.00542 0.90012 1.26869 0.92730 0.96806 1.02529 1.69932 1.23305 1.23453 1.30585 0.85047 0.78980 0.78569 0.76371 1.17540 1.19331 1.19387 1.20945 1.11343 0.98799 0.92143 1.20460 1.01835 0.90719 0.99156 0.89758 0.90880 0.91813 0.91316 0.90218 0.91302 0.87084 0.87679 0.87973 0.83985 0.84173 0.73975 0.88716 0.88952 0.90655 0.86826 0.84269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 9.17 71.24 0.65 -0.91 16 2 C -0.10 -1.54 6.05 -16.49 -0.10 -1.64 16 3 C -0.12 -1.40 10.03 71.24 0.71 -0.68 16 4 C -0.17 -3.04 9.10 25.64 0.23 -2.80 16 5 C -0.06 -0.93 5.96 71.23 0.42 -0.51 16 6 S -0.26 -7.07 20.86 -56.49 -1.18 -8.25 16 7 C -0.10 -2.23 6.43 71.24 0.46 -1.77 16 8 C 0.51 17.32 7.69 87.66 0.67 17.99 16 9 O -0.56 -26.15 13.28 -3.02 -0.04 -26.19 16 10 N -0.64 -20.43 5.30 -303.12 -1.61 -22.04 16 11 C 0.02 0.72 6.30 38.56 0.24 0.97 16 12 C -0.11 -5.55 8.62 22.14 0.19 -5.36 16 13 C -0.17 -9.67 8.57 22.48 0.19 -9.48 16 14 C 0.07 3.96 5.51 -21.28 -0.12 3.85 16 15 C -0.50 -27.55 9.03 23.39 0.21 -27.34 16 16 H 0.08 4.27 7.85 -2.91 -0.02 4.25 16 17 C 0.02 1.20 5.30 85.24 0.45 1.66 16 18 N -0.85 -48.17 10.94 21.82 0.24 -47.93 16 19 Si 0.99 40.30 29.56 68.60 2.03 42.32 16 20 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 21 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 22 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 23 C -0.21 -10.17 9.74 22.48 0.22 -9.95 16 24 C -0.10 -4.20 9.90 22.13 0.22 -3.98 16 25 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.07 0.80 8.13 -2.39 -0.02 0.78 16 27 H 0.06 0.89 6.23 -2.39 -0.01 0.87 16 28 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.08 0.68 8.12 -2.39 -0.02 0.66 16 30 H 0.07 0.74 8.06 -2.39 -0.02 0.72 16 31 H 0.11 2.03 8.05 -2.91 -0.02 2.00 16 32 H 0.10 1.38 5.62 -2.39 -0.01 1.37 16 33 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.14 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.14 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.42 9.01 8.82 -92.71 -0.82 8.20 16 37 H 0.09 5.12 6.21 -2.91 -0.02 5.11 16 38 H 0.09 5.67 6.42 -2.91 -0.02 5.66 16 39 H 0.28 14.77 8.30 -92.71 -0.77 14.00 16 40 H 0.11 4.96 8.06 -2.91 -0.02 4.94 16 41 H 0.14 4.39 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -75.22 357.31 4.33 -70.89 By element: Atomic # 1 Polarization: 30.94 SS G_CDS: 0.22 Total: 31.16 kcal Atomic # 6 Polarization: -44.64 SS G_CDS: 4.67 Total: -39.97 kcal Atomic # 7 Polarization: -68.60 SS G_CDS: -1.37 Total: -69.97 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.04 Total: -26.19 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.32 kcal Atomic # 16 Polarization: -7.07 SS G_CDS: -1.18 Total: -8.25 kcal Total: -75.22 4.33 -70.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000446111293.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.229 kcal (2) G-P(sol) polarization free energy of solvation -75.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds