Wall clock time and date at job start Tue Mar 31 2020 08:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.50700 * 120.00018 * 2 1 4 4 C 1.30996 * 119.99845 * 179.97438 * 2 1 3 5 5 C 1.50694 * 120.00329 * 4.98470 * 4 2 1 6 6 S 1.81402 * 109.47204 * 113.53610 * 5 4 2 7 7 C 1.81401 * 103.00087 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47292 * 180.02562 * 7 6 5 9 9 O 1.21279 * 119.99854 * 354.94919 * 8 7 6 10 10 N 1.34774 * 119.99942 * 174.94659 * 8 7 6 11 11 C 1.37141 * 120.00055 * 4.44399 * 10 8 7 12 12 H 1.07997 * 119.99756 * 58.48006 * 11 10 8 13 13 C 1.38890 * 120.00059 * 238.47927 * 11 10 8 14 14 N 1.31425 * 119.99744 * 5.95135 * 13 11 10 15 15 Si 1.86794 * 119.99979 * 185.94536 * 13 11 10 16 16 H 1.48506 * 109.47217 * 60.00365 * 15 13 11 17 17 H 1.48500 * 109.47123 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47635 * 300.00359 * 15 13 11 19 19 C 1.39786 * 119.99878 * 184.44728 * 10 8 7 20 20 C 1.38963 * 120.08022 * 173.95347 * 19 10 8 21 21 C 1.38074 * 119.92325 * 179.97438 * 20 19 10 22 22 C 1.38312 * 120.07891 * 359.97438 * 21 20 19 23 23 C 1.38311 * 120.15539 * 0.02562 * 22 21 20 24 24 C 1.38080 * 120.07881 * 359.97438 * 23 22 21 25 25 H 1.09007 * 109.47213 * 244.71365 * 1 2 3 26 26 H 1.09006 * 109.47040 * 4.70580 * 1 2 3 27 27 H 1.09003 * 109.47311 * 124.70887 * 1 2 3 28 28 H 1.09000 * 109.47094 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47582 * 300.00405 * 3 2 1 30 30 H 1.09005 * 109.47078 * 60.00165 * 3 2 1 31 31 H 1.08008 * 119.99612 * 184.97740 * 4 2 1 32 32 H 1.09005 * 109.46828 * 353.54489 * 5 4 2 33 33 H 1.08999 * 109.47611 * 233.54063 * 5 4 2 34 34 H 1.09000 * 109.47042 * 60.00174 * 7 6 5 35 35 H 1.09002 * 109.47100 * 300.00775 * 7 6 5 36 36 H 0.97000 * 119.99660 * 184.99894 * 14 13 11 37 37 H 1.07996 * 120.03420 * 359.70356 * 20 19 10 38 38 H 1.08000 * 119.96440 * 179.97438 * 21 20 19 39 39 H 1.08001 * 119.92394 * 179.97438 * 22 21 20 40 40 H 1.07997 * 119.95591 * 180.02562 * 23 22 21 41 41 H 1.07991 * 120.04011 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1619 -1.1345 0.0005 5 6 1.4128 -2.4371 -0.1123 6 16 1.8205 -3.2345 -1.6898 7 6 0.8391 -4.7594 -1.6419 8 6 1.0731 -5.5473 -2.9052 9 8 1.7545 -5.0807 -3.7933 10 7 0.5251 -6.7703 -3.0478 11 6 -0.3189 -7.2602 -2.0842 12 1 -1.2172 -6.7185 -1.8271 13 6 -0.0184 -8.4528 -1.4390 14 7 1.1292 -9.0517 -1.6660 15 14 -1.2453 -9.2055 -0.2484 16 1 -2.5150 -9.4940 -0.9626 17 1 -0.6900 -10.4678 0.3025 18 1 -1.5067 -8.2535 0.8609 19 6 0.8170 -7.5395 -4.1779 20 6 0.3556 -8.8471 -4.2685 21 6 0.6454 -9.6038 -5.3865 22 6 1.3935 -9.0616 -6.4157 23 6 1.8544 -7.7604 -6.3289 24 6 1.5684 -6.9979 -5.2139 25 1 -0.3634 -0.4390 0.9293 26 1 -0.3633 1.0243 -0.0843 27 1 -0.3634 -0.5852 -0.8448 28 1 3.3321 1.1059 0.0005 29 1 1.9972 1.8767 -0.8899 30 1 1.9972 1.8767 0.8900 31 1 3.2389 -1.1362 0.0817 32 1 0.3407 -2.2446 -0.0690 33 1 1.6978 -3.0927 0.7105 34 1 -0.2184 -4.5085 -1.5604 35 1 1.1381 -5.3570 -0.7807 36 1 1.3094 -9.9198 -1.2725 37 1 -0.2252 -9.2724 -3.4635 38 1 0.2875 -10.6203 -5.4575 39 1 1.6191 -9.6559 -7.2889 40 1 2.4379 -7.3401 -7.1346 41 1 1.9289 -5.9821 -5.1466 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000446133918.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:43 Heat of formation + Delta-G solvation = 19.962825 kcal Electronic energy + Delta-G solvation = -22049.860905 eV Core-core repulsion = 18828.952755 eV Total energy + Delta-G solvation = -3220.908150 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.70648 -37.22066 -36.86266 -35.07181 -32.02579 -30.45150 -30.13043 -29.61659 -27.89443 -27.77518 -25.23456 -24.45423 -21.84813 -21.20691 -19.57834 -18.12255 -17.71024 -16.33686 -15.86033 -15.67416 -15.28336 -15.07752 -14.63275 -14.49481 -14.36386 -14.02472 -13.43586 -13.26499 -12.90285 -12.83040 -12.58284 -12.50736 -12.26019 -12.25060 -11.97404 -11.72497 -11.49817 -11.36656 -11.33248 -11.15684 -11.04620 -10.87869 -10.56170 -10.07597 -9.66273 -9.25762 -8.81523 -8.66812 -8.24147 -7.81208 -7.21597 -6.91901 -6.36303 -4.66029 1.51200 2.38675 2.54567 2.55253 2.98338 3.04110 3.06924 3.07831 3.66248 3.90149 4.46962 4.66531 4.68173 4.83677 5.08920 5.16294 5.24584 5.38865 5.43409 5.64098 5.66578 5.68771 5.72710 5.73971 5.86328 5.86474 5.95063 5.99041 6.09195 6.15551 6.56342 6.69003 6.71583 6.80228 6.88568 7.12134 7.17449 7.49118 7.59769 7.66659 7.74516 8.01074 8.38783 8.76573 9.14580 9.53919 10.41041 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.015329 B = 0.003960 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.118894 B = 7069.209765 C = 8549.052129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C -0.115 4.115 4 C -0.142 4.142 5 C -0.080 4.080 6 S -0.198 6.198 7 C -0.092 4.092 8 C 0.512 3.488 9 O -0.547 6.547 10 N -0.379 5.379 11 C -0.375 4.375 12 H 0.092 0.908 13 C 0.058 3.942 14 N -0.839 5.839 15 Si 0.915 3.085 16 H -0.268 1.268 17 H -0.280 1.280 18 H -0.268 1.268 19 C 0.184 3.816 20 C -0.104 4.104 21 C -0.124 4.124 22 C -0.172 4.172 23 C -0.120 4.120 24 C -0.191 4.191 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.116 0.884 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.276 0.724 37 H 0.132 0.868 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.863 9.848 4.027 10.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.125 4.125 3 C -0.171 4.171 4 C -0.161 4.161 5 C -0.228 4.228 6 S 0.030 5.970 7 C -0.243 4.243 8 C 0.302 3.698 9 O -0.430 6.430 10 N -0.088 5.088 11 C -0.502 4.502 12 H 0.110 0.890 13 C -0.152 4.152 14 N -0.471 5.471 15 Si 0.740 3.260 16 H -0.192 1.192 17 H -0.205 1.205 18 H -0.193 1.193 19 C 0.087 3.913 20 C -0.124 4.124 21 C -0.143 4.143 22 C -0.192 4.192 23 C -0.139 4.139 24 C -0.210 4.210 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.133 0.867 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.119 0.881 35 H 0.128 0.872 36 H 0.087 0.913 37 H 0.149 0.851 38 H 0.123 0.877 39 H 0.119 0.881 40 H 0.124 0.876 41 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -0.717 10.269 2.982 10.718 hybrid contribution -1.370 -1.407 1.736 2.621 sum -2.086 8.863 4.717 10.254 Atomic orbital electron populations 1.20860 0.92396 1.02302 1.02303 1.21615 0.95901 0.94903 1.00041 1.20830 0.99553 0.94856 1.01892 1.22085 0.99467 0.91803 1.02782 1.22509 1.02882 0.98138 0.99231 1.87337 1.63029 1.22906 1.23743 1.23265 1.02837 0.96074 1.02132 1.19990 0.79647 0.83140 0.87060 1.90235 1.40968 1.70358 1.41483 1.40822 1.39048 1.12573 1.16328 1.19271 1.04607 1.09926 1.16413 0.89048 1.25669 0.95676 0.97623 0.96274 1.70008 1.20505 1.15280 1.41292 0.86183 0.80487 0.78800 0.80508 1.19244 1.20455 1.19296 1.18288 0.95246 0.91598 0.86157 1.21006 1.01492 0.92687 0.97246 1.20772 1.00323 0.98791 0.94418 1.20807 1.02974 0.96216 0.99155 1.20872 1.00695 0.94329 0.97977 1.22770 1.01064 1.04168 0.93018 0.91531 0.92145 0.91010 0.91993 0.91366 0.91865 0.86654 0.89656 0.89741 0.88139 0.87179 0.91304 0.85052 0.87730 0.88123 0.87647 0.80905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.17 8.60 36.00 0.31 -0.86 16 2 C -0.12 -1.29 6.05 -101.07 -0.61 -1.90 16 3 C -0.11 -0.99 10.04 36.01 0.36 -0.62 16 4 C -0.14 -1.73 9.12 -36.03 -0.33 -2.06 16 5 C -0.08 -1.08 6.16 36.00 0.22 -0.86 16 6 S -0.20 -3.55 20.86 -107.50 -2.24 -5.80 16 7 C -0.09 -1.80 5.25 36.01 0.19 -1.62 16 8 C 0.51 12.16 7.59 -10.99 -0.08 12.08 16 9 O -0.55 -13.80 12.27 5.56 0.07 -13.74 16 10 N -0.38 -9.46 2.60 -58.98 -0.15 -9.61 16 11 C -0.37 -8.98 7.53 -14.94 -0.11 -9.09 16 12 H 0.09 2.06 7.84 -52.49 -0.41 1.65 16 13 C 0.06 1.37 3.66 -17.48 -0.06 1.31 16 14 N -0.84 -21.39 11.39 55.49 0.63 -20.76 16 15 Si 0.92 18.08 29.56 -169.99 -5.02 13.06 16 16 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 17 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 18 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 19 C 0.18 4.63 6.06 -83.69 -0.51 4.12 16 20 C -0.10 -2.48 7.93 -39.37 -0.31 -2.79 16 21 C -0.12 -2.62 10.04 -39.61 -0.40 -3.01 16 22 C -0.17 -3.44 10.04 -39.53 -0.40 -3.84 16 23 C -0.12 -2.53 10.04 -39.61 -0.40 -2.92 16 24 C -0.19 -4.58 9.05 -39.37 -0.36 -4.94 16 25 H 0.07 0.59 8.03 -51.92 -0.42 0.17 16 26 H 0.06 0.49 8.01 -51.93 -0.42 0.07 16 27 H 0.07 0.76 7.39 -51.93 -0.38 0.37 16 28 H 0.06 0.52 7.79 -51.93 -0.40 0.11 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.12 1.36 7.84 -52.48 -0.41 0.95 16 32 H 0.08 1.05 5.80 -51.92 -0.30 0.75 16 33 H 0.08 1.09 8.14 -51.92 -0.42 0.66 16 34 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 35 H 0.11 2.16 8.03 -51.92 -0.42 1.74 16 36 H 0.28 6.68 8.32 -40.82 -0.34 6.34 16 37 H 0.13 3.23 5.21 -52.49 -0.27 2.96 16 38 H 0.10 1.91 8.06 -52.49 -0.42 1.48 16 39 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 40 H 0.11 1.91 8.06 -52.49 -0.42 1.49 16 41 H 0.17 4.34 4.52 -56.30 -0.25 4.08 16 LS Contribution 350.67 15.07 5.28 5.28 Total: -1.00 -28.00 350.67 -9.71 -37.70 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -5.78 Total: 10.86 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -2.49 Total: -17.00 kcal Atomic # 7 Polarization: -30.85 SS G_CDS: 0.48 Total: -30.37 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: 0.07 Total: -13.74 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.02 Total: 13.06 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -2.24 Total: -5.80 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.00 -9.71 -37.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000446133918.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.666 kcal (2) G-P(sol) polarization free energy of solvation -27.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds