Wall clock time and date at job start Tue Mar 31 2020 08:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.50700 * 120.00018 * 2 1 4 4 C 1.30996 * 119.99845 * 179.97438 * 2 1 3 5 5 C 1.50694 * 120.00329 * 4.98470 * 4 2 1 6 6 S 1.81402 * 109.47204 * 113.53610 * 5 4 2 7 7 C 1.81401 * 103.00087 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47292 * 180.02562 * 7 6 5 9 9 O 1.21279 * 119.99854 * 354.94919 * 8 7 6 10 10 N 1.34774 * 119.99942 * 174.94659 * 8 7 6 11 11 C 1.37141 * 120.00055 * 4.44399 * 10 8 7 12 12 H 1.07997 * 119.99756 * 58.48006 * 11 10 8 13 13 C 1.38890 * 120.00059 * 238.47927 * 11 10 8 14 14 N 1.31425 * 119.99744 * 5.95135 * 13 11 10 15 15 Si 1.86794 * 119.99979 * 185.94536 * 13 11 10 16 16 H 1.48506 * 109.47217 * 60.00365 * 15 13 11 17 17 H 1.48500 * 109.47123 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47635 * 300.00359 * 15 13 11 19 19 C 1.39786 * 119.99878 * 184.44728 * 10 8 7 20 20 C 1.38963 * 120.08022 * 173.95347 * 19 10 8 21 21 C 1.38074 * 119.92325 * 179.97438 * 20 19 10 22 22 C 1.38312 * 120.07891 * 359.97438 * 21 20 19 23 23 C 1.38311 * 120.15539 * 0.02562 * 22 21 20 24 24 C 1.38080 * 120.07881 * 359.97438 * 23 22 21 25 25 H 1.09007 * 109.47213 * 244.71365 * 1 2 3 26 26 H 1.09006 * 109.47040 * 4.70580 * 1 2 3 27 27 H 1.09003 * 109.47311 * 124.70887 * 1 2 3 28 28 H 1.09000 * 109.47094 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47582 * 300.00405 * 3 2 1 30 30 H 1.09005 * 109.47078 * 60.00165 * 3 2 1 31 31 H 1.08008 * 119.99612 * 184.97740 * 4 2 1 32 32 H 1.09005 * 109.46828 * 353.54489 * 5 4 2 33 33 H 1.08999 * 109.47611 * 233.54063 * 5 4 2 34 34 H 1.09000 * 109.47042 * 60.00174 * 7 6 5 35 35 H 1.09002 * 109.47100 * 300.00775 * 7 6 5 36 36 H 0.97000 * 119.99660 * 184.99894 * 14 13 11 37 37 H 1.07996 * 120.03420 * 359.70356 * 20 19 10 38 38 H 1.08000 * 119.96440 * 179.97438 * 21 20 19 39 39 H 1.08001 * 119.92394 * 179.97438 * 22 21 20 40 40 H 1.07997 * 119.95591 * 180.02562 * 23 22 21 41 41 H 1.07991 * 120.04011 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1619 -1.1345 0.0005 5 6 1.4128 -2.4371 -0.1123 6 16 1.8205 -3.2345 -1.6898 7 6 0.8391 -4.7594 -1.6419 8 6 1.0731 -5.5473 -2.9052 9 8 1.7545 -5.0807 -3.7933 10 7 0.5251 -6.7703 -3.0478 11 6 -0.3189 -7.2602 -2.0842 12 1 -1.2172 -6.7185 -1.8271 13 6 -0.0184 -8.4528 -1.4390 14 7 1.1292 -9.0517 -1.6660 15 14 -1.2453 -9.2055 -0.2484 16 1 -2.5150 -9.4940 -0.9626 17 1 -0.6900 -10.4678 0.3025 18 1 -1.5067 -8.2535 0.8609 19 6 0.8170 -7.5395 -4.1779 20 6 0.3556 -8.8471 -4.2685 21 6 0.6454 -9.6038 -5.3865 22 6 1.3935 -9.0616 -6.4157 23 6 1.8544 -7.7604 -6.3289 24 6 1.5684 -6.9979 -5.2139 25 1 -0.3634 -0.4390 0.9293 26 1 -0.3633 1.0243 -0.0843 27 1 -0.3634 -0.5852 -0.8448 28 1 3.3321 1.1059 0.0005 29 1 1.9972 1.8767 -0.8899 30 1 1.9972 1.8767 0.8900 31 1 3.2389 -1.1362 0.0817 32 1 0.3407 -2.2446 -0.0690 33 1 1.6978 -3.0927 0.7105 34 1 -0.2184 -4.5085 -1.5604 35 1 1.1381 -5.3570 -0.7807 36 1 1.3094 -9.9198 -1.2725 37 1 -0.2252 -9.2724 -3.4635 38 1 0.2875 -10.6203 -5.4575 39 1 1.6191 -9.6559 -7.2889 40 1 2.4379 -7.3401 -7.1346 41 1 1.9289 -5.9821 -5.1466 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000446133918.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:42 Heat of formation + Delta-G solvation = 7.876301 kcal Electronic energy + Delta-G solvation = -22050.385016 eV Core-core repulsion = 18828.952755 eV Total energy + Delta-G solvation = -3221.432261 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.49674 -38.95937 -37.73723 -36.87330 -33.85915 -31.93960 -31.36814 -31.21676 -29.45203 -28.63880 -27.06630 -25.39467 -23.57750 -22.92952 -21.36195 -19.67261 -18.82096 -18.08568 -17.47560 -17.20952 -16.84736 -16.43920 -16.11896 -15.96720 -15.46310 -15.13437 -14.98004 -14.73011 -14.54252 -14.35262 -14.11666 -13.77531 -13.53488 -13.28547 -13.21015 -13.08804 -13.04161 -12.80030 -12.76640 -12.50344 -12.34032 -12.16228 -11.93640 -11.76128 -11.07475 -10.95914 -10.59504 -10.04819 -9.60297 -9.55220 -8.74636 -8.62388 -8.16044 -6.52919 0.29792 0.64902 0.79795 1.36033 1.43268 1.45156 1.54418 1.84042 1.90767 2.23506 2.76448 2.89251 3.32658 3.77567 3.94369 4.01461 4.18254 4.20621 4.31113 4.34840 4.42110 4.47017 4.54076 4.59415 4.70904 4.80186 4.92732 4.94651 4.97714 4.98564 5.12350 5.14296 5.17786 5.33192 5.40761 5.71154 5.78165 5.86951 5.87935 5.93390 6.02166 6.20770 6.59137 6.94377 7.32915 7.72909 8.62029 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.015329 B = 0.003960 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.118894 B = 7069.209765 C = 8549.052129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.103 4.103 3 C -0.117 4.117 4 C -0.172 4.172 5 C -0.059 4.059 6 S -0.244 6.244 7 C -0.078 4.078 8 C 0.494 3.506 9 O -0.571 6.571 10 N -0.392 5.392 11 C -0.387 4.387 12 H 0.101 0.899 13 C 0.024 3.976 14 N -0.876 5.876 15 Si 0.982 3.018 16 H -0.262 1.262 17 H -0.282 1.282 18 H -0.257 1.257 19 C 0.151 3.849 20 C -0.124 4.124 21 C -0.124 4.124 22 C -0.163 4.163 23 C -0.120 4.120 24 C -0.217 4.217 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.114 0.886 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.117 0.883 35 H 0.105 0.895 36 H 0.276 0.724 37 H 0.118 0.882 38 H 0.135 0.865 39 H 0.143 0.857 40 H 0.135 0.865 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.846 10.147 4.432 11.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.107 4.107 3 C -0.174 4.174 4 C -0.191 4.191 5 C -0.206 4.206 6 S -0.016 6.016 7 C -0.228 4.228 8 C 0.285 3.715 9 O -0.456 6.456 10 N -0.100 5.100 11 C -0.514 4.514 12 H 0.118 0.882 13 C -0.183 4.183 14 N -0.509 5.509 15 Si 0.804 3.196 16 H -0.187 1.187 17 H -0.207 1.207 18 H -0.181 1.181 19 C 0.054 3.946 20 C -0.144 4.144 21 C -0.143 4.143 22 C -0.182 4.182 23 C -0.138 4.138 24 C -0.236 4.236 25 H 0.095 0.905 26 H 0.097 0.903 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.132 0.868 32 H 0.117 0.883 33 H 0.107 0.893 34 H 0.135 0.865 35 H 0.123 0.877 36 H 0.085 0.915 37 H 0.136 0.864 38 H 0.153 0.847 39 H 0.161 0.839 40 H 0.153 0.847 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -1.709 10.572 3.379 11.230 hybrid contribution -1.040 -1.403 1.548 2.334 sum -2.750 9.170 4.927 10.767 Atomic orbital electron populations 1.20941 0.91541 1.03459 1.02371 1.21995 0.96735 0.95290 0.96702 1.20913 0.99402 0.93931 1.03145 1.22050 0.99563 0.91633 1.05890 1.22515 1.03848 0.98314 0.95971 1.87438 1.63514 1.22527 1.28106 1.23072 1.03999 0.96206 0.99544 1.20684 0.79327 0.83263 0.88204 1.90215 1.41889 1.70888 1.42586 1.41088 1.39308 1.12975 1.16661 1.19612 1.04852 1.10456 1.16433 0.88198 1.26427 0.97011 0.97540 0.97290 1.70135 1.22489 1.15586 1.42686 0.85166 0.78146 0.77808 0.78485 1.18697 1.20744 1.18076 1.18673 0.96488 0.92539 0.86869 1.21052 1.02421 0.92728 0.98247 1.21172 0.99649 0.99865 0.93564 1.21242 1.01141 0.95868 0.99932 1.21240 1.00247 0.94772 0.97566 1.22780 1.02250 1.04214 0.94392 0.90480 0.90332 0.92032 0.91938 0.90504 0.89994 0.86798 0.88318 0.89266 0.86506 0.87714 0.91454 0.86370 0.84713 0.83875 0.84719 0.82532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 8.60 71.24 0.61 -1.53 16 2 C -0.10 -2.01 6.05 -16.48 -0.10 -2.11 16 3 C -0.12 -1.75 10.04 71.24 0.72 -1.03 16 4 C -0.17 -4.03 9.12 25.65 0.23 -3.80 16 5 C -0.06 -1.57 6.16 71.23 0.44 -1.13 16 6 S -0.24 -8.98 20.86 -56.49 -1.18 -10.16 16 7 C -0.08 -3.13 5.25 71.24 0.37 -2.76 16 8 C 0.49 24.53 7.59 87.66 0.67 25.19 16 9 O -0.57 -30.31 12.27 -3.03 -0.04 -30.34 16 10 N -0.39 -20.26 2.60 -458.89 -1.19 -21.45 16 11 C -0.39 -18.91 7.53 84.02 0.63 -18.28 16 12 H 0.10 4.55 7.84 -2.91 -0.02 4.53 16 13 C 0.02 1.16 3.66 84.91 0.31 1.47 16 14 N -0.88 -45.66 11.39 21.65 0.25 -45.41 16 15 Si 0.98 36.92 29.56 68.60 2.03 38.95 16 16 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 17 H -0.28 -10.65 7.11 99.48 0.71 -9.94 16 18 H -0.26 -9.11 7.11 99.48 0.71 -8.40 16 19 C 0.15 7.83 6.06 38.22 0.23 8.06 16 20 C -0.12 -6.00 7.93 22.40 0.18 -5.82 16 21 C -0.12 -5.04 10.04 22.25 0.22 -4.81 16 22 C -0.16 -6.10 10.04 22.30 0.22 -5.88 16 23 C -0.12 -4.92 10.04 22.25 0.22 -4.69 16 24 C -0.22 -10.70 9.05 22.41 0.20 -10.49 16 25 H 0.08 1.17 8.03 -2.38 -0.02 1.15 16 26 H 0.08 1.05 8.01 -2.38 -0.02 1.03 16 27 H 0.06 1.20 7.39 -2.39 -0.02 1.19 16 28 H 0.06 0.93 7.79 -2.39 -0.02 0.92 16 29 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.11 2.66 7.84 -2.91 -0.02 2.64 16 32 H 0.10 2.32 5.80 -2.39 -0.01 2.30 16 33 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.12 4.18 8.14 -2.39 -0.02 4.16 16 35 H 0.10 4.25 8.03 -2.39 -0.02 4.23 16 36 H 0.28 13.61 8.32 -92.71 -0.77 12.83 16 37 H 0.12 5.94 5.21 -2.91 -0.02 5.93 16 38 H 0.14 4.56 8.06 -2.91 -0.02 4.54 16 39 H 0.14 4.15 8.06 -2.91 -0.02 4.12 16 40 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 41 H 0.16 8.26 4.52 -63.20 -0.29 7.97 16 Total: -1.00 -62.69 350.67 5.78 -56.91 By element: Atomic # 1 Polarization: 38.37 SS G_CDS: 0.75 Total: 39.12 kcal Atomic # 6 Polarization: -32.78 SS G_CDS: 5.17 Total: -27.61 kcal Atomic # 7 Polarization: -65.92 SS G_CDS: -0.95 Total: -66.86 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: -0.04 Total: -30.34 kcal Atomic # 14 Polarization: 36.92 SS G_CDS: 2.03 Total: 38.95 kcal Atomic # 16 Polarization: -8.98 SS G_CDS: -1.18 Total: -10.16 kcal Total: -62.69 5.78 -56.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000446133918.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.788 kcal (2) G-P(sol) polarization free energy of solvation -62.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds