Wall clock time and date at job start Tue Mar 31 2020 08:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.33843 * 125.79660 * 2 1 4 4 C 1.34204 * 110.85560 * 179.97438 * 3 2 1 5 5 C 1.34230 * 109.10178 * 0.02562 * 4 3 2 6 6 C 1.36294 * 125.80449 * 179.68947 * 2 1 3 7 7 C 1.47580 * 127.16964 * 0.02562 * 6 2 1 8 8 C 1.37182 * 126.36539 * 129.71043 * 7 6 2 9 9 C 1.40853 * 104.17753 * 179.89905 * 8 7 6 10 10 N 1.33961 * 127.08837 * 180.12522 * 9 8 7 11 11 C 1.33329 * 120.00003 * 180.30575 * 10 9 8 12 12 O 1.21923 * 120.00058 * 0.02562 * 11 10 9 13 13 N 1.34772 * 119.99651 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00232 * 0.02562 * 13 11 10 15 15 C 1.46505 * 119.99904 * 179.97438 * 13 11 10 16 16 C 1.50702 * 109.46493 * 90.00345 * 15 13 11 17 17 H 1.07994 * 120.00286 * 0.02562 * 16 15 13 18 18 C 1.37877 * 119.99776 * 180.02562 * 16 15 13 19 19 N 1.31518 * 119.99776 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00137 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47055 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47180 * 119.99781 * 20 18 16 23 23 H 1.48497 * 109.47023 * 239.99827 * 20 18 16 24 24 N 1.36075 * 105.82464 * 0.35844 * 9 8 7 25 25 H 0.96998 * 124.63109 * 179.78058 * 24 9 8 26 26 O 1.20959 * 110.73473 * 359.76774 * 24 9 8 27 27 H 1.08995 * 109.47411 * 0.02575 * 1 2 3 28 28 H 1.08998 * 109.46596 * 120.02514 * 1 2 3 29 29 H 1.09004 * 109.46950 * 240.02334 * 1 2 3 30 30 H 1.07993 * 125.44937 * 180.02562 * 4 3 2 31 31 H 1.07999 * 127.01084 * 180.02562 * 5 4 3 32 32 H 1.08001 * 127.91105 * 0.02562 * 8 7 6 33 33 H 1.09001 * 109.47645 * 89.99675 * 14 13 11 34 34 H 1.09001 * 109.46994 * 209.99238 * 14 13 11 35 35 H 1.08994 * 109.47145 * 329.99479 * 14 13 11 36 36 H 1.08993 * 109.47382 * 210.00253 * 15 13 11 37 37 H 1.09004 * 109.46930 * 330.00697 * 15 13 11 38 38 H 0.97010 * 119.99708 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2899 1.0856 0.0000 4 6 3.5866 0.7396 0.0006 5 6 3.6840 -0.5992 0.0004 6 6 2.3044 -1.1053 0.0060 7 6 1.8723 -2.5165 0.0131 8 6 2.3093 -3.5052 -0.8314 9 6 1.6041 -4.6512 -0.4150 10 7 1.6876 -5.8837 -0.9331 11 6 0.9455 -6.8703 -0.4294 12 8 0.1905 -6.6505 0.5024 13 7 1.0292 -8.1102 -0.9509 14 6 1.9359 -8.3741 -2.0709 15 6 0.2142 -9.1943 -0.3971 16 6 -1.1056 -9.2513 -1.1224 17 1 -1.3161 -8.5505 -1.9166 18 6 -2.0444 -10.1983 -0.7720 19 7 -1.7883 -11.0515 0.1956 20 14 -3.6801 -10.2695 -1.6714 21 1 -3.7208 -9.2084 -2.7095 22 1 -3.8335 -11.5988 -2.3154 23 1 -4.7866 -10.0576 -0.7040 24 7 0.8165 -4.2471 0.6185 25 1 0.2109 -4.8248 1.1086 26 8 0.9752 -3.0691 0.8426 27 1 -0.3634 1.0276 -0.0005 28 1 -0.3632 -0.5142 -0.8898 29 1 -0.3633 -0.5135 0.8902 30 1 4.4186 1.4281 0.0011 31 1 4.5913 -1.1850 0.0011 32 1 3.0306 -3.4241 -1.6311 33 1 2.9127 -8.6674 -1.6864 34 1 1.5306 -9.1786 -2.6847 35 1 2.0390 -7.4728 -2.6751 36 1 0.7379 -10.1422 -0.5207 37 1 0.0386 -9.0117 0.6631 38 1 -2.4488 -11.7181 0.4419 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490174928.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:28 Heat of formation + Delta-G solvation = 93.000411 kcal Electronic energy + Delta-G solvation = -24053.748253 eV Core-core repulsion = 20289.714036 eV Total energy + Delta-G solvation = -3764.034217 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -45.07583 -42.94541 -38.99539 -35.41664 -34.94111 -34.08903 -32.49860 -32.39747 -31.84249 -30.69057 -27.56627 -27.24625 -25.49870 -24.12590 -23.46551 -22.53537 -21.75230 -20.39299 -19.62869 -18.10239 -17.85711 -17.53239 -16.67936 -16.39714 -16.14641 -15.66916 -15.18748 -14.42357 -14.38248 -14.13070 -13.85495 -13.72699 -13.48874 -13.40223 -13.29389 -12.89044 -12.56908 -12.38026 -11.96784 -11.47578 -11.26470 -11.10394 -10.77135 -10.75956 -10.55911 -10.34679 -10.02234 -9.78469 -9.48223 -8.92448 -8.52948 -8.34597 -7.91320 -7.21945 -5.94697 -3.98919 0.55466 1.29219 1.75187 2.15405 2.36522 2.48968 3.34598 3.40051 3.41185 3.47047 3.94974 4.07135 4.31419 4.49500 4.54387 4.63465 4.75109 4.87530 4.97934 5.02069 5.13943 5.25027 5.31873 5.38074 5.64057 5.75283 5.83449 6.02287 6.21510 6.34518 6.55906 6.61617 6.63179 7.27131 7.57238 7.78653 7.99967 8.02304 8.04901 8.36325 8.77226 9.03593 9.57298 9.72516 11.12699 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.026396 B = 0.002858 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.511575 B = 9793.761094 C =10386.605999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.054 3.946 3 O -0.172 6.172 4 C -0.034 4.034 5 C -0.174 4.174 6 C -0.147 4.147 7 C 0.140 3.860 8 C -0.218 4.218 9 C 0.430 3.570 10 N -0.632 5.632 11 C 0.666 3.334 12 O -0.642 6.642 13 N -0.586 5.586 14 C 0.101 3.899 15 C 0.254 3.746 16 C -0.519 4.519 17 H 0.057 0.943 18 C 0.058 3.942 19 N -0.897 5.897 20 Si 0.898 3.102 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.284 1.284 24 N -0.521 5.521 25 H 0.478 0.522 26 O -0.003 6.003 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.212 0.788 31 H 0.163 0.837 32 H 0.188 0.812 33 H 0.036 0.964 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.032 0.968 37 H 0.042 0.958 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.579 26.371 -1.047 28.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.002 3.998 3 O -0.068 6.068 4 C -0.099 4.099 5 C -0.193 4.193 6 C -0.149 4.149 7 C 0.082 3.918 8 C -0.241 4.241 9 C 0.174 3.826 10 N -0.396 5.396 11 C 0.367 3.633 12 O -0.527 6.527 13 N -0.317 5.317 14 C -0.043 4.043 15 C 0.133 3.867 16 C -0.558 4.558 17 H 0.075 0.925 18 C -0.143 4.143 19 N -0.537 5.537 20 Si 0.726 3.274 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.210 1.210 24 N -0.204 5.204 25 H 0.344 0.656 26 O -0.013 6.013 27 H 0.104 0.896 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.228 0.772 31 H 0.180 0.820 32 H 0.205 0.795 33 H 0.054 0.946 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.050 0.950 37 H 0.060 0.940 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.066 26.154 -0.689 28.407 hybrid contribution -1.320 -0.685 0.175 1.498 sum 9.746 25.469 -0.515 27.275 Atomic orbital electron populations 1.20548 0.84005 1.04879 1.04873 1.22803 0.94043 0.83267 0.99727 1.83834 1.17181 1.34429 1.71392 1.23911 0.83563 0.96135 1.06323 1.22741 0.95851 0.94147 1.06557 1.18545 0.93554 0.86978 1.15860 1.20457 0.89572 0.92301 0.89488 1.21662 1.08070 0.88749 1.05645 1.21192 0.85398 0.93661 0.82383 1.69574 1.36937 0.96442 1.36613 1.16928 0.80744 0.83834 0.81767 1.90504 1.45593 1.82862 1.33734 1.47077 1.42505 1.08259 1.33828 1.21433 0.92044 1.01450 0.89339 1.19234 0.88992 0.82973 0.95452 1.21529 1.00341 1.15485 1.18458 0.92513 1.24946 0.98545 0.95538 0.95280 1.69959 1.35332 1.19144 1.29262 0.86443 0.83683 0.77702 0.79594 1.19855 1.20948 1.21001 1.44711 1.43128 0.97450 1.35092 0.65590 1.84012 1.54784 1.11622 1.50894 0.89620 0.88720 0.88622 0.77192 0.81955 0.79509 0.94558 0.91888 0.91357 0.94963 0.94031 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.50 10.17 36.01 0.37 -0.13 16 2 C 0.05 0.42 7.37 -35.01 -0.26 0.16 16 3 O -0.17 -1.25 10.53 7.19 0.08 -1.17 16 4 C -0.03 -0.18 12.03 29.32 0.35 0.18 16 5 C -0.17 -1.16 11.15 -37.47 -0.42 -1.58 16 6 C -0.15 -1.30 6.24 -103.26 -0.64 -1.95 16 7 C 0.14 1.56 7.01 -36.16 -0.25 1.31 16 8 C -0.22 -2.70 11.10 -38.98 -0.43 -3.14 16 9 C 0.43 7.35 7.77 -155.79 -1.21 6.14 16 10 N -0.63 -13.15 9.24 -16.09 -0.15 -13.30 16 11 C 0.67 16.58 8.18 -88.21 -0.72 15.86 16 12 O -0.64 -17.20 13.34 4.99 0.07 -17.13 16 13 N -0.59 -14.75 2.86 -189.11 -0.54 -15.29 16 14 C 0.10 2.05 10.41 59.85 0.62 2.68 16 15 C 0.25 7.29 5.16 -5.19 -0.03 7.26 16 16 C -0.52 -15.79 9.39 -34.44 -0.32 -16.12 16 17 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 19 N -0.90 -27.82 13.29 55.43 0.74 -27.08 16 20 Si 0.90 22.82 29.54 -169.99 -5.02 17.80 16 21 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 24 N -0.52 -8.32 6.49 31.18 0.20 -8.12 16 25 H 0.48 8.50 6.29 -40.82 -0.26 8.24 16 26 O 0.00 -0.04 11.17 17.01 0.19 0.15 16 27 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.21 0.27 8.06 -52.49 -0.42 -0.16 16 31 H 0.16 0.80 8.06 -52.49 -0.42 0.38 16 32 H 0.19 1.84 8.06 -52.49 -0.42 1.41 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 1.25 8.07 -51.93 -0.42 0.83 16 35 H 0.07 1.29 7.31 -51.93 -0.38 0.91 16 36 H 0.03 0.93 8.07 -51.93 -0.42 0.51 16 37 H 0.04 1.32 7.42 -51.93 -0.39 0.93 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 339.26 15.07 5.11 5.11 Total: -1.00 -37.79 339.26 -6.73 -44.52 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -4.36 Total: 2.20 kcal Atomic # 6 Polarization: 15.36 SS G_CDS: -3.04 Total: 12.31 kcal Atomic # 7 Polarization: -64.05 SS G_CDS: 0.25 Total: -63.80 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: 0.33 Total: -18.15 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -37.79 -6.73 -44.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490174928.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.520 kcal (2) G-P(sol) polarization free energy of solvation -37.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds