Wall clock time and date at job start Tue Mar 31 2020 08:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.33839 * 125.80402 * 2 1 4 4 C 1.34188 * 110.85794 * 179.97438 * 3 2 1 5 5 C 1.34241 * 109.10422 * 359.74748 * 4 3 2 6 6 C 1.36294 * 125.79885 * 179.97438 * 2 1 3 7 7 C 1.47581 * 127.17352 * 359.97438 * 6 2 1 8 8 C 1.37173 * 126.36745 * 130.31908 * 7 6 2 9 9 C 1.40851 * 104.17772 * 180.11336 * 8 7 6 10 10 N 1.33968 * 127.08679 * 179.85991 * 9 8 7 11 11 C 1.33326 * 120.00126 * 179.71437 * 10 9 8 12 12 O 1.21928 * 119.99912 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00531 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00694 * 179.97438 * 13 11 10 15 15 H 1.09007 * 109.46342 * 324.99575 * 14 13 11 16 16 C 1.52998 * 109.47185 * 84.99510 * 14 13 11 17 17 C 1.50701 * 109.47260 * 204.99997 * 14 13 11 18 18 H 1.08002 * 119.99761 * 359.97438 * 17 14 13 19 19 C 1.37871 * 119.99694 * 180.27562 * 17 14 13 20 20 N 1.31523 * 119.99908 * 179.72112 * 19 17 14 21 21 Si 1.86800 * 120.00405 * 359.71709 * 19 17 14 22 22 H 1.48500 * 109.47210 * 90.00069 * 21 19 17 23 23 H 1.48504 * 109.47424 * 210.00300 * 21 19 17 24 24 H 1.48502 * 109.46888 * 330.00390 * 21 19 17 25 25 N 1.36068 * 105.82975 * 359.60130 * 9 8 7 26 26 H 0.97000 * 124.63626 * 180.28377 * 25 9 8 27 27 O 1.20955 * 110.73149 * 0.26211 * 25 9 8 28 28 H 1.09004 * 109.47095 * 270.02720 * 1 2 3 29 29 H 1.09002 * 109.47035 * 30.02388 * 1 2 3 30 30 H 1.08999 * 109.47468 * 150.02538 * 1 2 3 31 31 H 1.07997 * 125.45030 * 180.02562 * 4 3 2 32 32 H 1.07993 * 127.00705 * 180.23800 * 5 4 3 33 33 H 1.08005 * 127.91288 * 359.97438 * 8 7 6 34 34 H 0.97006 * 119.99365 * 359.97438 * 13 11 10 35 35 H 1.09005 * 109.46870 * 300.00240 * 16 14 13 36 36 H 1.08998 * 109.47156 * 60.00179 * 16 14 13 37 37 H 1.09004 * 109.46783 * 180.02562 * 16 14 13 38 38 H 0.96995 * 120.00181 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2900 1.0855 0.0000 4 6 3.5865 0.7394 0.0006 5 6 3.6838 -0.5995 0.0065 6 6 2.3043 -1.1055 0.0005 7 6 1.8721 -2.5166 0.0017 8 6 2.3170 -3.5042 -0.8400 9 6 1.6041 -4.6495 -0.4351 10 7 1.6875 -5.8799 -0.9584 11 6 0.9464 -6.8688 -0.4581 12 8 0.1930 -6.6535 0.4761 13 7 1.0305 -8.1067 -0.9842 14 6 0.2166 -9.1935 -0.4341 15 1 0.1159 -9.0623 0.6434 16 6 -1.1691 -9.1713 -1.0823 17 6 0.8835 -10.5145 -0.7192 18 1 1.8198 -10.5418 -1.2568 19 6 0.2952 -11.6885 -0.2991 20 7 0.8744 -12.8418 -0.5527 21 14 -1.3245 -11.6413 0.6303 22 1 -2.4511 -11.7127 -0.3345 23 1 -1.3954 -12.7968 1.5605 24 1 -1.4146 -10.3769 1.4038 25 7 0.8177 -4.2502 0.6010 26 1 0.2129 -4.8303 1.0895 27 8 0.9761 -3.0731 0.8299 28 1 -0.3633 0.0005 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5134 31 1 4.4186 1.4278 0.0011 32 1 4.5911 -1.1853 0.0121 33 1 3.0453 -3.4219 -1.6332 34 1 1.6302 -8.2781 -1.7272 35 1 -1.6514 -8.2158 -0.8760 36 1 -1.0684 -9.3024 -2.1597 37 1 -1.7748 -9.9797 -0.6726 38 1 0.4608 -13.6677 -0.2569 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490205765.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:31 Heat of formation + Delta-G solvation = 63.812248 kcal Electronic energy + Delta-G solvation = -23911.753255 eV Core-core repulsion = 20146.453344 eV Total energy + Delta-G solvation = -3765.299911 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -46.36948 -43.49751 -40.83491 -37.38631 -36.03792 -35.62594 -34.38473 -32.93479 -32.75846 -32.61256 -30.99434 -27.85120 -27.25223 -25.14593 -24.65009 -23.46824 -22.37063 -21.76102 -20.70527 -20.36860 -19.13216 -18.97382 -18.41196 -17.65776 -17.36865 -17.22126 -16.71609 -16.10201 -16.03256 -15.22343 -15.07671 -14.93975 -14.83696 -14.35592 -14.19230 -14.12506 -13.87407 -13.74749 -13.72576 -13.35022 -12.88493 -12.83502 -12.73991 -12.24035 -12.15079 -11.62993 -11.55470 -11.30474 -10.88148 -10.55756 -10.37269 -10.00289 -9.51273 -9.01037 -8.39032 -6.45449 -0.49485 0.48321 0.86350 1.00873 1.26027 1.33216 1.44431 1.50302 1.86536 2.24495 2.25610 2.38288 2.79227 2.97059 3.26989 3.57529 3.68697 3.92660 4.04906 4.31980 4.40041 4.48753 4.58340 4.61746 4.64649 4.68795 4.73995 4.86499 4.89736 4.96661 5.14934 5.21228 5.32983 5.37727 5.43853 5.74119 6.04058 6.15664 6.40457 6.55636 6.72804 7.02173 7.19334 7.85268 8.76792 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.041750 B = 0.002580 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.505276 B =10848.342074 C =11232.878831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.059 3.941 3 O -0.177 6.177 4 C -0.019 4.019 5 C -0.188 4.188 6 C -0.178 4.178 7 C 0.173 3.827 8 C -0.221 4.221 9 C 0.417 3.583 10 N -0.661 5.661 11 C 0.660 3.340 12 O -0.682 6.682 13 N -0.693 5.693 14 C 0.256 3.744 15 H 0.022 0.978 16 C -0.152 4.152 17 C -0.536 4.536 18 H 0.051 0.949 19 C 0.027 3.973 20 N -0.934 5.934 21 Si 0.946 3.054 22 H -0.257 1.257 23 H -0.288 1.288 24 H -0.263 1.263 25 N -0.517 5.517 26 H 0.474 0.526 27 O 0.011 5.989 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.251 0.749 32 H 0.177 0.823 33 H 0.213 0.787 34 H 0.404 0.596 35 H 0.043 0.957 36 H 0.061 0.939 37 H 0.045 0.955 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.697 35.008 1.049 35.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.007 3.993 3 O -0.073 6.073 4 C -0.084 4.084 5 C -0.207 4.207 6 C -0.181 4.181 7 C 0.114 3.886 8 C -0.244 4.244 9 C 0.166 3.834 10 N -0.428 5.428 11 C 0.360 3.640 12 O -0.570 6.570 13 N -0.341 5.341 14 C 0.150 3.850 15 H 0.039 0.961 16 C -0.210 4.210 17 C -0.575 4.575 18 H 0.069 0.931 19 C -0.172 4.172 20 N -0.573 5.573 21 Si 0.772 3.228 22 H -0.182 1.182 23 H -0.215 1.215 24 H -0.188 1.188 25 N -0.192 5.192 26 H 0.338 0.662 27 O -0.001 6.001 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.106 0.894 31 H 0.267 0.733 32 H 0.194 0.806 33 H 0.230 0.770 34 H 0.238 0.762 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.132 34.863 1.504 34.961 hybrid contribution -0.735 -1.447 0.729 1.779 sum 1.397 33.416 2.233 33.520 Atomic orbital electron populations 1.20660 0.82865 1.05610 1.05450 1.23117 0.94853 0.83091 0.98245 1.83864 1.18067 1.34215 1.71148 1.24706 0.83498 0.96391 1.03834 1.23009 0.95350 0.94955 1.07366 1.18725 0.95172 0.85691 1.18493 1.20892 0.87200 0.93049 0.87507 1.21939 1.08310 0.87080 1.07062 1.21677 0.85700 0.93667 0.82343 1.69589 1.37822 0.97135 1.38263 1.17380 0.80847 0.84512 0.81268 1.90461 1.47680 1.84068 1.34787 1.44893 1.45217 1.06930 1.37091 1.18688 0.88366 0.84429 0.93475 0.96053 1.22333 0.97712 0.99320 1.01606 1.21253 1.08299 0.90003 1.37902 0.93101 1.25611 1.01011 0.94624 0.95998 1.69988 1.41303 0.98397 1.47601 0.85905 0.80266 0.77534 0.79072 1.18207 1.21504 1.18801 1.44560 1.42166 0.98577 1.33857 0.66219 1.84077 1.55175 1.10196 1.50684 0.87850 0.87718 0.89382 0.73328 0.80574 0.76970 0.76197 0.93804 0.92007 0.93635 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.64 10.23 71.24 0.73 0.08 16 2 C 0.06 0.68 7.37 25.23 0.19 0.86 16 3 O -0.18 -1.77 10.53 3.02 0.03 -1.74 16 4 C -0.02 -0.11 12.03 66.91 0.81 0.69 16 5 C -0.19 -1.76 11.15 23.64 0.26 -1.49 16 6 C -0.18 -2.46 6.24 -18.98 -0.12 -2.58 16 7 C 0.17 3.19 6.85 24.49 0.17 3.36 16 8 C -0.22 -4.78 11.10 22.66 0.25 -4.53 16 9 C 0.42 13.13 7.77 133.99 1.04 14.17 16 10 N -0.66 -26.33 10.61 -323.74 -3.44 -29.76 16 11 C 0.66 30.82 8.43 179.51 1.51 32.34 16 12 O -0.68 -33.16 13.42 -5.08 -0.07 -33.23 16 13 N -0.69 -33.79 5.07 -462.26 -2.35 -36.13 16 14 C 0.26 13.64 2.15 44.24 0.10 13.74 16 15 H 0.02 1.25 6.64 -2.38 -0.02 1.23 16 16 C -0.15 -7.28 8.96 71.98 0.65 -6.63 16 17 C -0.54 -31.98 9.31 25.60 0.24 -31.74 16 18 H 0.05 3.26 7.98 -2.91 -0.02 3.24 16 19 C 0.03 1.62 5.45 84.65 0.46 2.08 16 20 N -0.93 -58.56 13.96 21.45 0.30 -58.26 16 21 Si 0.95 46.85 24.37 68.60 1.67 48.53 16 22 H -0.26 -11.84 6.86 99.48 0.68 -11.16 16 23 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 24 H -0.26 -13.00 6.54 99.48 0.65 -12.35 16 25 N -0.52 -14.65 6.49 -55.25 -0.36 -15.01 16 26 H 0.47 15.01 6.29 -92.71 -0.58 14.43 16 27 O 0.01 0.23 11.17 70.91 0.79 1.02 16 28 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 29 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.09 0.74 7.93 -2.39 -0.02 0.72 16 31 H 0.25 -0.75 8.06 -2.91 -0.02 -0.77 16 32 H 0.18 1.09 8.06 -2.91 -0.02 1.07 16 33 H 0.21 3.48 8.06 -2.91 -0.02 3.46 16 34 H 0.40 18.70 8.64 -92.70 -0.80 17.90 16 35 H 0.04 1.99 8.14 -2.38 -0.02 1.97 16 36 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 37 H 0.05 2.16 3.25 -2.38 -0.01 2.16 16 38 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 Total: -1.00 -79.27 328.98 2.54 -76.73 By element: Atomic # 1 Polarization: 27.83 SS G_CDS: -0.33 Total: 27.50 kcal Atomic # 6 Polarization: 14.07 SS G_CDS: 6.28 Total: 20.34 kcal Atomic # 7 Polarization: -133.33 SS G_CDS: -5.84 Total: -139.17 kcal Atomic # 8 Polarization: -34.70 SS G_CDS: 0.76 Total: -33.94 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 1.67 Total: 48.53 kcal Total: -79.27 2.54 -76.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490205765.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.546 kcal (2) G-P(sol) polarization free energy of solvation -79.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds