Wall clock time and date at job start Tue Mar 31 2020 08:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46867 * 67.48044 * 3 2 1 5 5 C 1.36671 * 120.00079 * 96.08411 * 4 3 2 6 6 H 1.07997 * 120.00091 * 162.05134 * 5 4 3 7 7 C 1.39142 * 119.99887 * 342.04365 * 5 4 3 8 8 N 1.31315 * 120.00055 * 339.45401 * 7 5 4 9 9 Si 1.86796 * 120.00043 * 159.45723 * 7 5 4 10 10 H 1.48502 * 109.47429 * 89.99971 * 9 7 5 11 11 H 1.48501 * 109.47091 * 210.00003 * 9 7 5 12 12 H 1.48500 * 109.47006 * 329.99842 * 9 7 5 13 13 C 1.34782 * 119.99784 * 275.80017 * 4 3 2 14 14 O 1.21794 * 119.99967 * 180.02562 * 13 4 3 15 15 C 1.41753 * 119.99917 * 0.02562 * 13 4 3 16 16 C 1.35308 * 120.00065 * 179.97438 * 15 13 4 17 17 C 1.46643 * 120.00556 * 180.02562 * 16 15 13 18 18 C 1.39276 * 120.71967 * 359.72493 * 17 16 15 19 19 C 1.38685 * 120.53453 * 179.78356 * 18 17 16 20 20 C 1.36206 * 121.87263 * 0.47682 * 19 18 17 21 21 C 1.40511 * 120.72298 * 359.76561 * 20 19 18 22 22 C 1.40570 * 121.33018 * 179.97438 * 21 20 19 23 23 C 1.36168 * 119.62686 * 180.02562 * 22 21 20 24 24 C 1.39267 * 120.99784 * 0.03609 * 23 22 21 25 25 C 1.36377 * 120.89682 * 359.97438 * 24 23 22 26 26 C 1.39897 * 119.62220 * 0.02562 * 25 24 23 27 27 H 4.40636 * 5.51410 * 180.02562 * 4 1 2 28 28 H 1.09001 * 109.47057 * 307.47518 * 3 2 1 29 29 H 1.09001 * 109.46799 * 187.48037 * 3 2 1 30 30 H 0.96994 * 120.00157 * 179.97438 * 8 7 5 31 31 H 1.08002 * 120.00295 * 0.02562 * 15 13 4 32 32 H 1.08005 * 120.00120 * 359.97438 * 16 15 13 33 33 H 1.08001 * 119.73574 * 359.97438 * 18 17 16 34 34 H 1.08000 * 119.06356 * 180.26464 * 19 18 17 35 35 H 1.07995 * 119.64328 * 179.78369 * 20 19 18 36 36 H 1.07997 * 120.18275 * 0.03997 * 22 21 20 37 37 H 1.07995 * 119.50487 * 180.02562 * 23 22 21 38 38 H 1.08001 * 119.54974 * 180.02562 * 24 23 22 39 39 H 1.08000 * 120.18619 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1346 -0.5281 -1.2759 5 6 3.4802 0.3285 -2.2832 6 1 4.0997 -0.0174 -3.0975 7 6 3.0339 1.6461 -2.2597 8 7 1.9886 1.9725 -1.5351 9 14 3.9217 2.9509 -3.2592 10 1 3.3188 3.0322 -4.6139 11 1 3.7942 4.2658 -2.5809 12 1 5.3578 2.5920 -3.3772 13 6 3.2486 -1.8592 -1.4543 14 8 3.6551 -2.2989 -2.5149 15 6 2.8952 -2.7474 -0.4076 16 6 3.0091 -4.0837 -0.5869 17 6 2.6431 -5.0027 0.4956 18 6 2.1820 -4.5162 1.7165 19 6 1.8326 -5.3890 2.7361 20 6 1.9333 -6.7397 2.5927 21 6 2.3955 -7.3015 1.3906 22 6 2.5050 -8.6936 1.2289 23 6 2.9576 -9.2007 0.0490 24 6 3.3155 -8.3606 -1.0025 25 6 3.2218 -7.0056 -0.8793 26 6 2.7606 -6.4504 0.3191 27 1 -1.0499 0.0001 -0.0002 28 1 3.0097 -0.6244 0.8156 29 1 3.0089 1.0198 0.1338 30 1 1.6777 2.8911 -1.5184 31 1 2.5343 -2.3576 0.5327 32 1 3.3689 -4.4737 -1.5277 33 1 2.0927 -3.4508 1.8693 34 1 1.4737 -4.9860 3.6716 35 1 1.6546 -7.3860 3.4118 36 1 2.2313 -9.3571 2.0359 37 1 3.0405 -10.2705 -0.0732 38 1 3.6713 -8.7880 -1.9283 39 1 3.5028 -6.3648 -1.7020 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490973289.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:54 Heat of formation + Delta-G solvation = 99.932563 kcal Electronic energy + Delta-G solvation = -23036.144687 eV Core-core repulsion = 19683.260334 eV Total energy + Delta-G solvation = -3352.884353 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.116 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.12452 -38.86607 -36.51287 -35.36894 -33.91532 -32.31857 -31.33141 -31.10288 -30.26242 -28.51024 -26.61257 -25.34053 -23.73306 -22.98042 -22.58011 -20.36473 -18.45054 -17.96521 -17.38502 -17.09649 -16.58980 -16.24529 -15.96845 -14.87315 -14.50651 -14.14750 -14.13123 -13.97612 -13.56415 -13.49293 -13.34956 -12.88683 -12.67489 -12.51566 -12.35778 -11.88541 -11.70021 -11.43021 -11.41535 -11.07561 -10.78930 -10.66127 -10.56519 -10.44757 -10.28886 -9.43833 -9.42727 -8.99290 -8.92583 -8.59751 -8.47512 -7.99860 -7.41302 -6.52607 -3.91947 0.30992 1.08607 1.58234 2.50425 3.08000 3.16459 3.17484 3.23438 3.69131 3.95682 4.07808 4.16276 4.40738 4.61822 4.67609 4.87421 4.97037 4.99088 5.01953 5.12846 5.19073 5.37341 5.40044 5.42415 5.49866 5.61216 5.83996 5.91972 6.07286 6.09142 6.22211 6.28961 6.33169 6.42328 6.52515 6.60665 6.63789 6.80627 6.92527 6.95604 7.01100 7.06447 7.37909 7.95730 8.30921 8.74000 9.02099 9.20399 9.85793 10.46330 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.023730 B = 0.003291 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.667947 B = 8506.133500 C = 9411.553460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.118 4.118 3 C 0.227 3.773 4 N -0.420 5.420 5 C -0.302 4.302 6 H 0.110 0.890 7 C 0.029 3.971 8 N -0.847 5.847 9 Si 0.926 3.074 10 H -0.276 1.276 11 H -0.281 1.281 12 H -0.266 1.266 13 C 0.457 3.543 14 O -0.596 6.596 15 C -0.149 4.149 16 C -0.090 4.090 17 C -0.025 4.025 18 C -0.123 4.123 19 C -0.103 4.103 20 C -0.123 4.123 21 C -0.047 4.047 22 C -0.113 4.113 23 C -0.118 4.118 24 C -0.125 4.125 25 C -0.096 4.096 26 C -0.045 4.045 27 H 0.200 0.800 28 H 0.066 0.934 29 H 0.111 0.889 30 H 0.273 0.727 31 H 0.117 0.883 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.654 -13.642 9.497 16.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.120 4.120 3 C 0.104 3.896 4 N -0.135 5.135 5 C -0.429 4.429 6 H 0.127 0.873 7 C -0.177 4.177 8 N -0.483 5.483 9 Si 0.752 3.248 10 H -0.201 1.201 11 H -0.206 1.206 12 H -0.191 1.191 13 C 0.251 3.749 14 O -0.484 6.484 15 C -0.170 4.170 16 C -0.111 4.111 17 C -0.025 4.025 18 C -0.141 4.141 19 C -0.121 4.121 20 C -0.142 4.142 21 C -0.047 4.047 22 C -0.131 4.131 23 C -0.136 4.136 24 C -0.143 4.143 25 C -0.114 4.114 26 C -0.046 4.046 27 H 0.217 0.783 28 H 0.084 0.916 29 H 0.129 0.871 30 H 0.084 0.916 31 H 0.135 0.865 32 H 0.150 0.850 33 H 0.146 0.854 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.536 -13.572 9.008 16.298 hybrid contribution -0.188 0.918 -0.379 1.011 sum -0.724 -12.653 8.629 15.333 Atomic orbital electron populations 1.24293 0.95386 1.04874 1.02638 1.23083 0.94259 0.96697 0.97943 1.18368 0.84467 1.01142 0.85644 1.43779 1.52982 1.04731 1.11977 1.19826 1.28575 0.90273 1.04262 0.87272 1.25452 0.95185 0.98976 0.98072 1.70044 1.19292 1.19833 1.39155 0.85931 0.80221 0.79213 0.79475 1.20131 1.20604 1.19084 1.16759 0.87037 0.82406 0.88677 1.90656 1.52743 1.76261 1.28743 1.22399 1.00641 0.94497 0.99432 1.21933 0.99364 0.92356 0.97495 1.20154 0.97332 0.91197 0.93815 1.21410 0.99917 1.00130 0.92680 1.20621 0.99293 0.93355 0.98872 1.20882 1.01403 0.95344 0.96542 1.17991 0.99609 0.93225 0.93889 1.20985 1.00518 0.93656 0.97958 1.20813 0.99474 0.99716 0.93579 1.20882 1.00862 0.93536 0.99053 1.21072 0.98020 0.95432 0.96902 1.19031 0.99588 0.91980 0.93954 0.78277 0.91602 0.87079 0.91642 0.86540 0.85001 0.85371 0.86111 0.86064 0.85839 0.86259 0.86004 0.84996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.16 19.25 29.55 0.57 -4.59 16 2 C -0.12 -2.60 11.20 -37.12 -0.42 -3.02 16 3 C 0.23 4.91 4.78 -6.83 -0.03 4.88 16 4 N -0.42 -10.55 2.59 -121.15 -0.31 -10.86 16 5 C -0.30 -8.13 9.32 -15.06 -0.14 -8.27 16 6 H 0.11 3.09 7.38 -52.49 -0.39 2.70 16 7 C 0.03 0.74 4.89 -17.44 -0.09 0.66 16 8 N -0.85 -21.40 9.44 55.51 0.52 -20.88 16 9 Si 0.93 19.70 29.60 -169.99 -5.03 14.66 16 10 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 11 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 12 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 13 C 0.46 11.37 7.34 -14.91 -0.11 11.26 16 14 O -0.60 -16.77 15.75 5.10 0.08 -16.69 16 15 C -0.15 -2.98 8.32 -39.28 -0.33 -3.31 16 16 C -0.09 -1.64 9.07 -37.24 -0.34 -1.98 16 17 C -0.02 -0.40 6.04 -102.87 -0.62 -1.02 16 18 C -0.12 -1.74 9.41 -39.03 -0.37 -2.11 16 19 C -0.10 -1.24 9.87 -40.15 -0.40 -1.64 16 20 C -0.12 -1.44 9.71 -39.46 -0.38 -1.82 16 21 C -0.05 -0.62 5.74 -106.87 -0.61 -1.23 16 22 C -0.11 -1.24 9.78 -39.45 -0.39 -1.63 16 23 C -0.12 -1.23 9.95 -39.94 -0.40 -1.63 16 24 C -0.13 -1.45 9.96 -39.87 -0.40 -1.84 16 25 C -0.10 -1.33 9.46 -39.63 -0.37 -1.70 16 26 C -0.05 -0.68 5.90 -104.74 -0.62 -1.29 16 27 H 0.20 3.31 7.80 -54.10 -0.42 2.89 16 28 H 0.07 1.18 6.43 -51.93 -0.33 0.85 16 29 H 0.11 2.49 6.42 -51.93 -0.33 2.16 16 30 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 31 H 0.12 2.06 4.13 -52.49 -0.22 1.84 16 32 H 0.13 2.51 5.91 -52.48 -0.31 2.20 16 33 H 0.13 1.71 6.18 -52.49 -0.32 1.39 16 34 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 36 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 39 H 0.13 1.80 6.44 -52.49 -0.34 1.46 16 LS Contribution 337.97 15.07 5.09 5.09 Total: -1.00 -31.32 337.97 -9.00 -40.32 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -3.91 Total: 8.64 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: -5.43 Total: -20.28 kcal Atomic # 7 Polarization: -31.95 SS G_CDS: 0.21 Total: -31.74 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: 0.08 Total: -16.69 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.03 Total: 14.66 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.32 -9.00 -40.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490973289.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.251 kcal (2) G-P(sol) polarization free energy of solvation -31.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds