Wall clock time and date at job start Tue Mar 31 2020 08:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46867 * 67.48044 * 3 2 1 5 5 C 1.36671 * 120.00079 * 96.08411 * 4 3 2 6 6 H 1.07997 * 120.00091 * 162.05134 * 5 4 3 7 7 C 1.39142 * 119.99887 * 342.04365 * 5 4 3 8 8 N 1.31315 * 120.00055 * 339.45401 * 7 5 4 9 9 Si 1.86796 * 120.00043 * 159.45723 * 7 5 4 10 10 H 1.48502 * 109.47429 * 89.99971 * 9 7 5 11 11 H 1.48501 * 109.47091 * 210.00003 * 9 7 5 12 12 H 1.48500 * 109.47006 * 329.99842 * 9 7 5 13 13 C 1.34782 * 119.99784 * 275.80017 * 4 3 2 14 14 O 1.21794 * 119.99967 * 180.02562 * 13 4 3 15 15 C 1.41753 * 119.99917 * 0.02562 * 13 4 3 16 16 C 1.35308 * 120.00065 * 179.97438 * 15 13 4 17 17 C 1.46643 * 120.00556 * 180.02562 * 16 15 13 18 18 C 1.39276 * 120.71967 * 359.72493 * 17 16 15 19 19 C 1.38685 * 120.53453 * 179.78356 * 18 17 16 20 20 C 1.36206 * 121.87263 * 0.47682 * 19 18 17 21 21 C 1.40511 * 120.72298 * 359.76561 * 20 19 18 22 22 C 1.40570 * 121.33018 * 179.97438 * 21 20 19 23 23 C 1.36168 * 119.62686 * 180.02562 * 22 21 20 24 24 C 1.39267 * 120.99784 * 0.03609 * 23 22 21 25 25 C 1.36377 * 120.89682 * 359.97438 * 24 23 22 26 26 C 1.39897 * 119.62220 * 0.02562 * 25 24 23 27 27 H 4.40636 * 5.51410 * 180.02562 * 4 1 2 28 28 H 1.09001 * 109.47057 * 307.47518 * 3 2 1 29 29 H 1.09001 * 109.46799 * 187.48037 * 3 2 1 30 30 H 0.96994 * 120.00157 * 179.97438 * 8 7 5 31 31 H 1.08002 * 120.00295 * 0.02562 * 15 13 4 32 32 H 1.08005 * 120.00120 * 359.97438 * 16 15 13 33 33 H 1.08001 * 119.73574 * 359.97438 * 18 17 16 34 34 H 1.08000 * 119.06356 * 180.26464 * 19 18 17 35 35 H 1.07995 * 119.64328 * 179.78369 * 20 19 18 36 36 H 1.07997 * 120.18275 * 0.03997 * 22 21 20 37 37 H 1.07995 * 119.50487 * 180.02562 * 23 22 21 38 38 H 1.08001 * 119.54974 * 180.02562 * 24 23 22 39 39 H 1.08000 * 120.18619 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1346 -0.5281 -1.2759 5 6 3.4802 0.3285 -2.2832 6 1 4.0997 -0.0174 -3.0975 7 6 3.0339 1.6461 -2.2597 8 7 1.9886 1.9725 -1.5351 9 14 3.9217 2.9509 -3.2592 10 1 3.3188 3.0322 -4.6139 11 1 3.7942 4.2658 -2.5809 12 1 5.3578 2.5920 -3.3772 13 6 3.2486 -1.8592 -1.4543 14 8 3.6551 -2.2989 -2.5149 15 6 2.8952 -2.7474 -0.4076 16 6 3.0091 -4.0837 -0.5869 17 6 2.6431 -5.0027 0.4956 18 6 2.1820 -4.5162 1.7165 19 6 1.8326 -5.3890 2.7361 20 6 1.9333 -6.7397 2.5927 21 6 2.3955 -7.3015 1.3906 22 6 2.5050 -8.6936 1.2289 23 6 2.9576 -9.2007 0.0490 24 6 3.3155 -8.3606 -1.0025 25 6 3.2218 -7.0056 -0.8793 26 6 2.7606 -6.4504 0.3191 27 1 -1.0499 0.0001 -0.0002 28 1 3.0097 -0.6244 0.8156 29 1 3.0089 1.0198 0.1338 30 1 1.6777 2.8911 -1.5184 31 1 2.5343 -2.3576 0.5327 32 1 3.3689 -4.4737 -1.5277 33 1 2.0927 -3.4508 1.8693 34 1 1.4737 -4.9860 3.6716 35 1 1.6546 -7.3860 3.4118 36 1 2.2313 -9.3571 2.0359 37 1 3.0405 -10.2705 -0.0732 38 1 3.6713 -8.7880 -1.9283 39 1 3.5028 -6.3648 -1.7020 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490973289.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:53 Heat of formation + Delta-G solvation = 84.412613 kcal Electronic energy + Delta-G solvation = -23036.817683 eV Core-core repulsion = 19683.260334 eV Total energy + Delta-G solvation = -3353.557349 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.116 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.17657 -40.63781 -37.59523 -37.15346 -35.22175 -34.09905 -33.09238 -32.31457 -31.22525 -29.69657 -28.33743 -27.03355 -25.07035 -23.98576 -23.70305 -21.71104 -19.95674 -19.67026 -18.84630 -18.32470 -18.12324 -17.54060 -17.05922 -16.60293 -16.09094 -15.86481 -15.24175 -15.20748 -14.78743 -14.60488 -14.52138 -14.29009 -14.19866 -14.03724 -13.77634 -13.52629 -12.87824 -12.81316 -12.69824 -12.53597 -12.43285 -12.14606 -11.75609 -11.66800 -11.47212 -11.25572 -11.13223 -10.72567 -10.42032 -10.16868 -9.89489 -9.56239 -8.54924 -8.40979 -5.94346 -0.80611 0.11866 0.37706 1.27897 1.40762 1.43609 1.54087 1.99990 2.13407 2.28102 2.36001 2.53534 3.08622 3.19879 3.23739 3.68449 3.71008 3.80636 3.88720 4.01847 4.13158 4.17762 4.27451 4.37374 4.45074 4.49254 4.62536 4.69204 4.88090 4.91484 4.93877 5.08249 5.24069 5.30480 5.35182 5.37090 5.38966 5.40055 5.57444 5.63398 5.74033 5.92940 6.03752 6.10249 6.40968 7.07950 7.11166 7.32755 7.95355 8.56586 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.023730 B = 0.003291 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.667947 B = 8506.133500 C = 9411.553460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.157 4.157 3 C 0.230 3.770 4 N -0.434 5.434 5 C -0.351 4.351 6 H 0.077 0.923 7 C 0.005 3.995 8 N -0.861 5.861 9 Si 0.989 3.011 10 H -0.279 1.279 11 H -0.263 1.263 12 H -0.270 1.270 13 C 0.452 3.548 14 O -0.646 6.646 15 C -0.186 4.186 16 C -0.047 4.047 17 C -0.076 4.076 18 C -0.103 4.103 19 C -0.122 4.122 20 C -0.094 4.094 21 C -0.073 4.073 22 C -0.102 4.102 23 C -0.123 4.123 24 C -0.113 4.113 25 C -0.136 4.136 26 C -0.057 4.057 27 H 0.234 0.766 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.277 0.723 31 H 0.141 0.859 32 H 0.113 0.887 33 H 0.133 0.867 34 H 0.154 0.846 35 H 0.162 0.838 36 H 0.161 0.839 37 H 0.154 0.846 38 H 0.142 0.858 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.984 -16.290 12.524 20.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.158 4.158 3 C 0.108 3.892 4 N -0.148 5.148 5 C -0.479 4.479 6 H 0.095 0.905 7 C -0.200 4.200 8 N -0.496 5.496 9 Si 0.812 3.188 10 H -0.204 1.204 11 H -0.187 1.187 12 H -0.194 1.194 13 C 0.248 3.752 14 O -0.538 6.538 15 C -0.206 4.206 16 C -0.069 4.069 17 C -0.076 4.076 18 C -0.121 4.121 19 C -0.140 4.140 20 C -0.112 4.112 21 C -0.073 4.073 22 C -0.120 4.120 23 C -0.141 4.141 24 C -0.131 4.131 25 C -0.154 4.154 26 C -0.057 4.057 27 H 0.251 0.749 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.087 0.913 31 H 0.159 0.841 32 H 0.131 0.869 33 H 0.150 0.850 34 H 0.172 0.828 35 H 0.179 0.821 36 H 0.178 0.822 37 H 0.172 0.828 38 H 0.159 0.841 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.884 -16.219 12.077 20.309 hybrid contribution 0.159 1.268 -1.181 1.740 sum -1.725 -14.951 10.896 18.580 Atomic orbital electron populations 1.25151 0.96339 1.03339 1.01002 1.23358 0.94875 0.98143 0.99435 1.18411 0.84852 1.00882 0.85045 1.43862 1.53576 1.04616 1.12775 1.19666 1.30930 0.91972 1.05350 0.90496 1.26102 0.95348 0.99704 0.98871 1.70118 1.19542 1.20262 1.39722 0.85023 0.78724 0.77195 0.77903 1.20442 1.18747 1.19424 1.17499 0.85623 0.83045 0.89065 1.90591 1.54873 1.77289 1.31047 1.22102 1.04899 0.94091 0.99517 1.22058 0.95020 0.92403 0.97387 1.20053 1.01807 0.91606 0.94130 1.21696 0.97172 1.01003 0.92260 1.20967 0.99990 0.93482 0.99533 1.21424 0.97505 0.95751 0.96540 1.18371 1.00588 0.94342 0.94027 1.21438 0.98578 0.92965 0.99015 1.21230 0.98626 1.01335 0.92904 1.21238 0.98829 0.92691 1.00376 1.21105 1.00795 0.96656 0.96867 1.19227 0.99741 0.91721 0.95035 0.74941 0.88450 0.88432 0.91270 0.84144 0.86915 0.84951 0.82790 0.82077 0.82163 0.82786 0.84055 0.86697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.60 19.25 74.32 1.43 -8.17 16 2 C -0.16 -6.97 11.20 31.13 0.35 -6.62 16 3 C 0.23 10.34 4.78 84.58 0.40 10.75 16 4 N -0.43 -23.20 2.59 -655.39 -1.70 -24.89 16 5 C -0.35 -20.29 9.32 84.16 0.78 -19.51 16 6 H 0.08 4.78 7.38 -2.91 -0.02 4.76 16 7 C 0.00 0.25 4.89 84.99 0.42 0.67 16 8 N -0.86 -44.51 9.44 21.70 0.20 -44.31 16 9 Si 0.99 41.83 29.60 68.60 2.03 43.86 16 10 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 12 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 13 C 0.45 24.17 7.34 85.11 0.62 24.80 16 14 O -0.65 -39.57 15.75 -4.65 -0.07 -39.64 16 15 C -0.19 -7.85 8.32 22.46 0.19 -7.66 16 16 C -0.05 -1.83 9.07 23.79 0.22 -1.61 16 17 C -0.08 -2.43 6.04 -18.73 -0.11 -2.55 16 18 C -0.10 -2.76 9.41 22.63 0.21 -2.54 16 19 C -0.12 -2.46 9.87 21.90 0.22 -2.24 16 20 C -0.09 -1.75 9.71 22.35 0.22 -1.54 16 21 C -0.07 -1.69 5.74 -21.32 -0.12 -1.81 16 22 C -0.10 -1.76 9.78 22.36 0.22 -1.55 16 23 C -0.12 -2.09 9.95 22.04 0.22 -1.87 16 24 C -0.11 -2.42 9.96 22.08 0.22 -2.20 16 25 C -0.14 -3.82 9.46 22.24 0.21 -3.61 16 26 C -0.06 -1.67 5.90 -19.94 -0.12 -1.79 16 27 H 0.23 7.22 7.80 -4.42 -0.03 7.19 16 28 H 0.10 3.59 6.43 -2.39 -0.02 3.58 16 29 H 0.10 4.57 6.42 -2.39 -0.02 4.55 16 30 H 0.28 13.40 8.31 -92.71 -0.77 12.63 16 31 H 0.14 5.09 4.13 -2.91 -0.01 5.08 16 32 H 0.11 4.74 5.91 -2.91 -0.02 4.72 16 33 H 0.13 3.34 6.18 -2.91 -0.02 3.32 16 34 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 35 H 0.16 1.73 8.06 -2.91 -0.02 1.70 16 36 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 37 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 38 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 39 H 0.12 3.46 6.44 -2.91 -0.02 3.44 16 Total: -1.00 -74.15 337.97 7.12 -67.03 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: 1.08 Total: 27.00 kcal Atomic # 6 Polarization: -34.62 SS G_CDS: 5.57 Total: -29.05 kcal Atomic # 7 Polarization: -67.71 SS G_CDS: -1.49 Total: -69.20 kcal Atomic # 8 Polarization: -39.57 SS G_CDS: -0.07 Total: -39.64 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -74.15 7.12 -67.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490973289.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.441 kcal (2) G-P(sol) polarization free energy of solvation -74.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds