Wall clock time and date at job start Tue Mar 31 2020 08:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46490 * 109.47516 * 35.44872 * 3 2 1 5 5 C 1.36705 * 120.00384 * 263.81485 * 4 3 2 6 6 H 1.07996 * 120.00072 * 199.93987 * 5 4 3 7 7 C 1.39126 * 119.99328 * 19.94312 * 5 4 3 8 8 N 1.31318 * 120.00483 * 21.79823 * 7 5 4 9 9 Si 1.86804 * 119.99496 * 201.79269 * 7 5 4 10 10 H 1.48493 * 109.47086 * 60.00221 * 9 7 5 11 11 H 1.48502 * 109.46840 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47437 * 299.99981 * 9 7 5 13 13 C 1.34780 * 120.00146 * 83.81686 * 4 3 2 14 14 O 1.21770 * 120.00324 * 179.97438 * 13 4 3 15 15 C 1.46190 * 119.99764 * 0.02562 * 13 4 3 16 16 C 1.35056 * 119.99852 * 179.97438 * 15 13 4 17 17 C 1.47043 * 119.99962 * 179.97438 * 16 15 13 18 18 C 1.40920 * 119.77995 * 359.73034 * 17 16 15 19 19 C 1.35622 * 120.81444 * 179.74762 * 18 17 16 20 20 C 1.40783 * 120.07138 * 0.52620 * 19 18 17 21 21 C 1.40440 * 121.00193 * 179.76053 * 20 19 18 22 22 C 1.36179 * 119.73313 * 180.02562 * 21 20 19 23 23 C 1.39360 * 121.01334 * 359.95787 * 22 21 20 24 24 C 1.36098 * 120.94845 * 0.02562 * 23 22 21 25 25 C 1.40696 * 119.65753 * 0.02562 * 24 23 22 26 26 C 1.38849 * 119.78475 * 180.02562 * 17 16 15 27 27 H 4.40634 * 5.51412 * 180.02562 * 4 1 2 28 28 H 1.08997 * 109.47118 * 275.44601 * 3 2 1 29 29 H 1.09007 * 109.46766 * 155.45143 * 3 2 1 30 30 H 0.96996 * 119.99780 * 180.02562 * 8 7 5 31 31 H 1.08001 * 119.99794 * 359.97438 * 15 13 4 32 32 H 1.08000 * 119.99749 * 0.02562 * 16 15 13 33 33 H 1.07997 * 119.59037 * 359.97438 * 18 17 16 34 34 H 1.08003 * 119.96398 * 180.25965 * 19 18 17 35 35 H 1.07999 * 120.13146 * 0.05000 * 21 20 19 36 36 H 1.07991 * 119.49262 * 179.97438 * 22 21 20 37 37 H 1.07992 * 119.52517 * 180.02562 * 23 22 21 38 38 H 1.07991 * 120.16758 * 180.02562 * 24 23 22 39 39 H 1.08001 * 120.28377 * 359.95844 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1242 -0.8010 5 6 3.4836 -2.2970 -0.1913 6 1 4.1296 -2.9982 -0.6987 7 6 3.0061 -2.5873 1.0828 8 7 1.9229 -1.9941 1.5291 9 14 3.9060 -3.8212 2.1586 10 1 5.2950 -3.3521 2.3943 11 1 3.1999 -3.9521 3.4585 12 1 3.9378 -5.1407 1.4782 13 6 3.2410 -1.0029 -2.1391 14 8 3.6478 -1.9377 -2.8049 15 6 2.8687 0.2515 -2.7911 16 6 2.9755 0.3733 -4.1319 17 6 2.6005 1.6348 -4.7878 18 6 2.1249 2.7118 -4.0134 19 6 1.7779 3.8864 -4.5959 20 6 1.8799 4.0388 -5.9918 21 6 1.5212 5.2447 -6.6159 22 6 1.6296 5.3637 -7.9681 23 6 2.0932 4.3052 -8.7472 24 6 2.4505 3.1216 -8.1784 25 6 2.3511 2.9610 -6.7842 26 6 2.7116 1.7549 -6.1666 27 1 -1.0498 -0.0002 -0.0004 28 1 3.0094 -0.0967 1.0230 29 1 3.0089 0.9357 -0.4270 30 1 1.5904 -2.1963 2.4175 31 1 2.5083 1.0808 -2.2005 32 1 3.3356 -0.4562 -4.7224 33 1 2.0390 2.6017 -2.9425 34 1 1.4189 4.7043 -3.9888 35 1 1.1613 6.0745 -6.0257 36 1 1.3524 6.2926 -8.4440 37 1 2.1700 4.4260 -9.8176 38 1 2.8085 2.3098 -8.7941 39 1 3.0726 0.9265 -6.7581 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490984663.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:48 Heat of formation + Delta-G solvation = 93.979074 kcal Electronic energy + Delta-G solvation = -22722.555556 eV Core-core repulsion = 19369.413041 eV Total energy + Delta-G solvation = -3353.142516 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.116 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.28994 -38.70473 -36.84216 -35.24053 -33.19130 -32.55458 -32.07369 -31.28769 -29.60074 -28.92156 -26.57810 -25.26638 -23.51262 -23.32243 -21.95334 -21.01850 -18.59244 -17.93937 -17.24917 -17.03961 -16.61483 -16.41366 -15.59766 -14.82310 -14.70217 -14.48920 -14.13880 -13.99594 -13.67285 -13.43015 -13.34928 -12.82081 -12.58818 -12.53005 -12.38848 -12.10194 -11.69988 -11.60428 -11.26244 -11.07384 -11.00801 -10.69181 -10.62199 -10.43012 -10.13074 -9.48637 -9.41821 -9.30291 -8.98554 -8.47812 -8.28234 -7.95793 -7.60417 -6.47047 -3.91657 0.36985 0.82943 1.83356 2.25091 3.10749 3.19064 3.21474 3.23122 3.70768 3.97435 4.10634 4.11873 4.38029 4.52685 4.73299 4.75608 4.85373 4.99427 5.02355 5.08018 5.20389 5.30287 5.32929 5.40272 5.43089 5.64895 5.73336 5.85773 5.93036 6.10731 6.12602 6.22222 6.26754 6.34387 6.45833 6.55001 6.61519 6.79189 6.87709 6.95046 6.96606 7.04735 7.43199 7.99242 8.34074 8.76441 9.04925 9.23948 9.87138 10.52221 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.030842 B = 0.002840 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.648540 B = 9855.548367 C =10521.153855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.119 4.119 3 C 0.229 3.771 4 N -0.422 5.422 5 C -0.310 4.310 6 H 0.107 0.893 7 C 0.032 3.968 8 N -0.848 5.848 9 Si 0.925 3.075 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.271 1.271 13 C 0.462 3.538 14 O -0.591 6.591 15 C -0.150 4.150 16 C -0.093 4.093 17 C -0.036 4.036 18 C -0.104 4.104 19 C -0.108 4.108 20 C -0.057 4.057 21 C -0.104 4.104 22 C -0.125 4.125 23 C -0.122 4.122 24 C -0.105 4.105 25 C -0.047 4.047 26 C -0.104 4.104 27 H 0.200 0.800 28 H 0.107 0.893 29 H 0.066 0.934 30 H 0.272 0.728 31 H 0.118 0.882 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.126 0.874 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.523 14.863 -11.204 18.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.120 4.120 3 C 0.106 3.894 4 N -0.138 5.138 5 C -0.437 4.437 6 H 0.125 0.875 7 C -0.175 4.175 8 N -0.484 5.484 9 Si 0.750 3.250 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.196 1.196 13 C 0.255 3.745 14 O -0.478 6.478 15 C -0.171 4.171 16 C -0.114 4.114 17 C -0.036 4.036 18 C -0.122 4.122 19 C -0.126 4.126 20 C -0.057 4.057 21 C -0.122 4.122 22 C -0.143 4.143 23 C -0.140 4.140 24 C -0.123 4.123 25 C -0.047 4.047 26 C -0.122 4.122 27 H 0.217 0.783 28 H 0.125 0.875 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.135 0.865 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.144 0.856 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.415 14.363 -11.262 18.307 hybrid contribution -0.156 -0.591 0.814 1.018 sum -1.571 13.772 -10.448 17.358 Atomic orbital electron populations 1.24270 0.95363 1.03661 1.03798 1.23074 0.94266 0.97199 0.97508 1.18292 0.84469 0.88293 0.98342 1.43648 1.53735 1.12081 1.04302 1.19700 1.27551 0.97738 0.98716 0.87517 1.25423 0.94969 0.98571 0.98489 1.70047 1.17288 1.42316 1.18771 0.86019 0.79582 0.80665 0.78689 1.19654 1.20896 1.19625 1.17913 0.86134 0.88332 0.82164 1.90647 1.52325 1.41661 1.63132 1.23360 1.00230 0.97905 0.95602 1.22081 0.99296 0.95144 0.94911 1.19111 0.97625 0.93788 0.93056 1.21142 0.98038 0.92611 1.00430 1.20899 1.00497 0.97915 0.93284 1.18145 1.00091 0.93897 0.93580 1.21019 0.99701 0.96512 0.94994 1.20811 1.00568 0.98904 0.94044 1.20802 0.99831 0.93524 0.99835 1.21080 0.99840 0.97939 0.93489 1.18030 0.99462 0.93764 0.93463 1.21477 1.00347 0.96597 0.93813 0.78330 0.87528 0.91586 0.91721 0.86458 0.85060 0.85344 0.85548 0.85793 0.86296 0.86235 0.85631 0.85145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.15 19.25 29.55 0.57 -4.58 16 2 C -0.12 -2.61 11.10 -37.12 -0.41 -3.03 16 3 C 0.23 4.96 4.79 -6.83 -0.03 4.93 16 4 N -0.42 -10.64 2.59 -119.61 -0.31 -10.95 16 5 C -0.31 -8.39 9.27 -15.05 -0.14 -8.53 16 6 H 0.11 3.04 7.42 -52.49 -0.39 2.65 16 7 C 0.03 0.81 4.83 -17.44 -0.08 0.73 16 8 N -0.85 -21.70 9.59 55.50 0.53 -21.17 16 9 Si 0.92 19.89 29.61 -169.99 -5.03 14.86 16 10 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 11 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 12 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 13 C 0.46 11.49 7.49 -13.07 -0.10 11.39 16 14 O -0.59 -16.68 15.90 5.13 0.08 -16.60 16 15 C -0.15 -2.95 8.46 -37.52 -0.32 -3.27 16 16 C -0.09 -1.65 9.44 -37.15 -0.35 -2.01 16 17 C -0.04 -0.54 5.86 -105.09 -0.62 -1.16 16 18 C -0.10 -1.43 9.31 -39.50 -0.37 -1.80 16 19 C -0.11 -1.31 9.73 -39.56 -0.38 -1.69 16 20 C -0.06 -0.71 5.75 -106.73 -0.61 -1.32 16 21 C -0.10 -1.07 9.75 -39.49 -0.39 -1.45 16 22 C -0.13 -1.16 9.95 -39.90 -0.40 -1.55 16 23 C -0.12 -1.15 9.95 -39.93 -0.40 -1.54 16 24 C -0.11 -1.13 9.77 -39.42 -0.39 -1.51 16 25 C -0.05 -0.61 5.74 -106.85 -0.61 -1.22 16 26 C -0.10 -1.42 9.53 -38.61 -0.37 -1.78 16 27 H 0.20 3.32 7.80 -54.10 -0.42 2.89 16 28 H 0.11 2.39 6.61 -51.93 -0.34 2.04 16 29 H 0.07 1.18 6.46 -51.93 -0.34 0.84 16 30 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 31 H 0.12 2.03 4.18 -52.49 -0.22 1.81 16 32 H 0.13 2.43 7.52 -52.49 -0.39 2.04 16 33 H 0.13 1.66 6.10 -52.49 -0.32 1.34 16 34 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 35 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 38 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 39 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 341.69 15.07 5.15 5.15 Total: -1.00 -31.65 341.69 -9.07 -40.72 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -4.10 Total: 7.38 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -5.39 Total: -19.40 kcal Atomic # 7 Polarization: -32.34 SS G_CDS: 0.22 Total: -32.11 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: 0.08 Total: -16.60 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.03 Total: 14.86 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.65 -9.07 -40.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490984663.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.700 kcal (2) G-P(sol) polarization free energy of solvation -31.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds